cufflinks_2.2.1+dfsg.1-3+b1_amd64.deb


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Description

cufflinks - Transcript assembly, differential expression and regulation for RNA-Seq

Property Value
Distribution Debian Sid
Repository Debian Nonfree amd64
Package name cufflinks
Package version 2.2.1+dfsg.1
Package release 3+b1
Package architecture amd64
Package type deb
Installed size 10.01 KB
Download size 1.43 MB
Official Mirror ftp.br.debian.org
Description -

Alternatives

Package Version Architecture Repository
cufflinks_2.2.1+dfsg.1-3+b1_i386.deb 2.2.1+dfsg.1 i386 Debian Nonfree
cufflinks - - -

Requires

Name Value
libboost system1.67.0
libboost thread1.67.0
libboost serialization1.67.0
libc6 >= 2.23
libgcc1 >= 1:4.0
libstdc++6 >= 5.2
python -
zlib1g >= 1:1.2.3.3

Download

Type URL
Binary Package cufflinks_2.2.1+dfsg.1-3+b1_amd64.deb
Source Package cufflinks

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install cufflinks deb package:
    # sudo apt-get install cufflinks

Files

Path
/usr/bin/compress_gtf
/usr/bin/cuffcompare
/usr/bin/cuffdiff
/usr/bin/cufflinks
/usr/bin/cuffmerge
/usr/bin/cuffnorm
/usr/bin/cuffquant
/usr/bin/gffread
/usr/bin/gtf_to_sam
/usr/share/doc/cufflinks/AUTHORS
/usr/share/doc/cufflinks/README
/usr/share/doc/cufflinks/changelog.Debian.amd64.gz
/usr/share/doc/cufflinks/changelog.Debian.gz
/usr/share/doc/cufflinks/copyright
/usr/share/man/man1/compress_gtf.1.gz
/usr/share/man/man1/cuffcompare.1.gz
/usr/share/man/man1/cuffdiff.1.gz
/usr/share/man/man1/cufflinks.1.gz
/usr/share/man/man1/cuffmerge.1.gz
/usr/share/man/man1/cuffnorm.1.gz
/usr/share/man/man1/cuffquant.1.gz
/usr/share/man/man1/gffread.1.gz
/usr/share/man/man1/gtf_to_sam.1.gz

Changelog

2018-10-18 - Andreas Tille <tille@debian.org>
cufflinks (2.2.1+dfsg.1-3) unstable; urgency=medium
* XS-Autobuild: yes
* d/rules: no manual inforcement of compression which is default
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
2017-11-02 - Alexandre Mestiashvili <alex@biotec.tu-dresden.de>
cufflinks (2.2.1+dfsg.1-2) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata:
- Added references to software catalogues.
- yamllint cleanliness
[ Alexandre Mestiashvili ]
* Add patch fixing FTBFS with upcoming boost1.65+, Closes: #880375
thanks to Dimitri John Ledkov <xnox@ubuntu.com>
* Bump Standards-Version to 4.1.1
2017-09-05 - Alexandre Mestiashvili <alex@biotec.tu-dresden.de>
cufflinks (2.2.1+dfsg.1-1) unstable; urgency=medium
[ Mattia Rizzolo ]
* add a closes to the previous changelog entry
[ Alexandre Mestiashvili ]
* Update d/watch
* Update d/copyright, add Files-Excluded section,
use https for copyrigth-format, add Upstream-Name
* New upstream version 2.2.1+dfsg.1
* Update d/rules, use variables provided by /usr/share/dpkg/default.mk
* Add patch fixing ftbfs with gcc-7, Closes: #871234
thanks to Jeff Epler <jepler@unpythonic.net>
* Update 0003-fix_includes_path.patch and 0001-fix_spelling.patch
* Bump Standards-Version in d/control
2016-08-16 - Andreas Tille <tille@debian.org>
cufflinks (2.2.1-3) unstable; urgency=medium
* Use unversioned libboost.  (Thanks for the hint to Gianfranco Costamagna)
Closes: 833760
* Fix gcc-6.1 build issue caused by an unmaintained code copy of liblemon.
Thanks for the hint to Graham Inggs <ginggs@debian.org>
Closes: #833493
2016-07-12 - Andreas Tille <tille@debian.org>
cufflinks (2.2.1-2) unstable; urgency=medium
* Watch file pointing to Github
* cme fix dpkg-control
* Use libboost 1.60
Closes: #797280, #822121
* hardening=+all
2014-05-16 - Alexandre Mestiashvili <alex@biotec.tu-dresden.de>
cufflinks (2.2.1-1) unstable; urgency=medium
* d/control: cme fix dpkg-control
* Imported Upstream version 2.2.1
2014-04-11 - Alexandre Mestiashvili <alex@biotec.tu-dresden.de>
cufflinks (2.2.0-1) unstable; urgency=medium
[ James McCoy ]
* Move debian/upstream to debian/upstream/metadata
[ Alexandre Mestiashvili ]
* Imported Upstream version 2.2.0
* d/rules:
- link to the serialization library "-lboost_serialization"
- generate man pages automatically with help2man
- separate rule for manpage for gffread as it doesn't return usage
message when executed without arguments
* d/control:
- use canonical VCS-* fields
- updated Standards-Version
- Build-Depends: add help2man
* d/patches/gffread_show_usage.patch: fix wrong USAGE indentation causing
buffer overflow in gffread when using -h, --help and some other arguments
* d/*.1: removed obsoleted manpages
* d/copyright: updated Source, Copyright years
2013-10-23 - Dmitrijs Ledkovs <xnox@ubuntu.com>
cufflinks (2.1.1-4) unstable; urgency=low
* Force use boost_system, boost_thread when linking. Fixing FTBFS in
ubuntu.
* Enable parallel build.
2013-09-07 - Dmitrijs Ledkovs <xnox@debian.org>
cufflinks (2.1.1-3) unstable; urgency=low
* Rebuild against boost1.54.
2013-05-23 - Dmitrijs Ledkovs <xnox@debian.org>
cufflinks (2.1.1-2) unstable; urgency=low
* Fix failing to build from source against boost1.53. (Closes: #709252)

See Also

Package Description
cuneiform-common_1.1.0+dfsg-7_all.deb multi-language OCR system (common)
cuneiform_1.1.0+dfsg-7_amd64.deb multi-language OCR system
d1x-rebirth_0.58.1-1+b1_amd64.deb port of the 1995 classic game Descent 1: First Strike
d2x-rebirth_0.58.1-1.1_amd64.deb port of the 1996 classic game Descent 2: Counterstrike
dahdi-firmware-nonfree_2.11.1.0.20170917-1_all.deb DAHDI non-free firmware
distributed-net_2.9112.521+arm64-1_amd64.deb client to donate unused CPU cycles to distributed.net
doc-rfc-experimental_20181229-2_all.deb Experimental RFCs
doc-rfc-fyi-bcp_20181229-2_all.deb FYI and BCP RFCs
doc-rfc-informational_20181229-2_all.deb Informational RFCs
doc-rfc-misc_20181229-2_all.deb Historic and draft RFCs
doc-rfc-old-std_20181229-2_all.deb Old Standard RFCs
doc-rfc-others_20181229-2_all.deb Old experimental and unclassified RFCs
doc-rfc-std-proposed_20181229-2_all.deb Proposed Standard RFCs
doc-rfc-std_20181229-2_all.deb Standard RFCs
doc-rfc_20181229-2_all.deb RFC documents metapackage
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