trimmomatic_0.39+dfsg-1_all.deb


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Description

trimmomatic - flexible read trimming tool for Illumina NGS data

Property Value
Distribution Debian Sid
Repository Debian Main i386
Package filename trimmomatic_0.39+dfsg-1_all.deb
Package name trimmomatic
Package version 0.39+dfsg
Package release 1
Package architecture all
Package type deb
Category science
Homepage http://www.usadellab.org/cms/index.php?page=trimmomatic
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 740.01 KB
Installed size 785.00 KB

Alternatives

Package Version Architecture Repository
trimmomatic_0.39+dfsg-1_all.deb 0.39+dfsg all Debian Main
trimmomatic - - -

Requires

Name Value
default-jre -
libjbzip2-java -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package trimmomatic_0.39+dfsg-1_all.deb
Source Package trimmomatic

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install trimmomatic deb package:
    # sudo apt-get install trimmomatic

Files

Path
/usr/bin/TrimmomaticPE
/usr/bin/TrimmomaticSE
/usr/share/doc/trimmomatic/README.Debian
/usr/share/doc/trimmomatic/README.test
/usr/share/doc/trimmomatic/changelog.Debian.gz
/usr/share/doc/trimmomatic/copyright
/usr/share/doc/trimmomatic/run-unit-test
/usr/share/doc/trimmomatic/examples/batchTrim
/usr/share/doc/trimmomatic/test_data/test_forward.fq.gz
/usr/share/doc/trimmomatic/test_data/test_reverse.fq.gz
/usr/share/doc/trimmomatic/test_data/test_single.fq.gz
/usr/share/java/trimmomatic-0.39.jar
/usr/share/java/trimmomatic.jar
/usr/share/man/man1/TrimmomaticPE.1.gz
/usr/share/man/man1/TrimmomaticSE.1.gz
/usr/share/trimmomatic/NexteraPE-PE.fa
/usr/share/trimmomatic/TruSeq2-PE.fa
/usr/share/trimmomatic/TruSeq2-SE.fa
/usr/share/trimmomatic/TruSeq3-PE-2.fa
/usr/share/trimmomatic/TruSeq3-PE.fa
/usr/share/trimmomatic/TruSeq3-SE.fa

Changelog

2019-07-03 - Andreas Tille <tille@debian.org>
trimmomatic (0.39+dfsg-1) unstable; urgency=medium
* New upstream version
* debhelper 12
* Standards-Version: 4.3.0
* Secure URI in copyright format
* Remove trailing whitespace in debian/changelog
* Remove trailing whitespace in debian/copyright
2018-05-22 - Andreas Tille <tille@debian.org>
trimmomatic (0.38+dfsg-1) unstable; urgency=medium
* New upstream version
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
2017-07-28 - Nadiya Sitdykova <rovenskasa@gmail.com>
trimmomatic (0.36+dfsg-3) unstable; urgency=medium
* Team upload.
[ Nadiya Sitdykova ]
* add autopkgtest test-suite
* add info about debian/tests/test_data
[ Steffen Moeller ]
* debian/upstream/metadata: added references to regitries
OMICtools, bio.tools, RRID
2017-07-13 - Fabian Klötzl <kloetzl@evolbio.mpg.de>
trimmomatic (0.36+dfsg-2) unstable; urgency=medium
* Team upload.
[ Fabian Klötzl ]
* allow filenames to contain spaces (Closes: #867535)
[ Andreas Tille ]
* debhelper 10
* Standards-Version: 4.0.0 (no changes needed)
* d/rules: do not parse changelog
2016-05-19 - Andreas Tille <tille@debian.org>
trimmomatic (0.36+dfsg-1) unstable; urgency=medium
[ Steffen Moeller ]
* Introduced EDAM ontology information to
debian/upstream/edam
* Added patch to find adapters in /usr/share/trimmomatic
[ Andreas Tille ]
* Use xz compression in watch file
* cme fix dpkg-control
2015-11-26 - Andreas Tille <tille@debian.org>
trimmomatic (0.35+dfsg-1) unstable; urgency=medium
* New upstream version
* Add example script for processing heaps of sequences
2015-05-19 - Andreas Tille <tille@debian.org>
trimmomatic (0.33+dfsg-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
2015-02-27 - Andreas Tille <tille@debian.org>
trimmomatic (0.32+dfsg-4) unstable; urgency=medium
* Also adjust manpage to make sure users will be properly informed
about the adapter location since the package might be useless
without this information (so the issue is closely related to
bug #779296)
2015-02-26 - Andreas Tille <tille@debian.org>
trimmomatic (0.32+dfsg-3) unstable; urgency=medium
* Install adapter files and document their usage in d/README.Debian
Closes: #779296
2014-12-16 - Andreas Tille <tille@debian.org>
trimmomatic (0.32+dfsg-2) unstable; urgency=medium
* Fix bashism in wrapper script
Closes: #772392

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