openms-common_2.4.0-real-1_all.deb


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Description

openms-common - package for LC/MS data management and analysis - shared data

Property Value
Distribution Debian Sid
Repository Debian Main i386
Package name openms-common
Package version 2.4.0
Package release real-1
Package architecture all
Package type deb
Installed size 144.28 KB
Download size 38.17 MB
Official Mirror ftp.br.debian.org
Description -

Alternatives

Package Version Architecture Repository
openms-common_2.4.0-real-1_all.deb 2.4.0 all Debian Main
openms-common - - -

Download

Type URL
Binary Package openms-common_2.4.0-real-1_all.deb
Source Package openms

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install openms-common deb package:
    # sudo apt-get install openms-common

Files

Path
/usr/share/doc/openms-common/AUTHORS
/usr/share/doc/openms-common/changelog.Debian.gz
/usr/share/doc/openms-common/changelog.gz
/usr/share/doc/openms-common/copyright
/usr/share/man/man7/openms-common.7.gz
/usr/share/openms-common/CHEMISTRY/Elements.xml
/usr/share/openms-common/CHEMISTRY/Enzymes.xml
/usr/share/openms-common/CHEMISTRY/Enzymes_RNA.xml
/usr/share/openms-common/CHEMISTRY/HMDB2StructMapping.tsv
/usr/share/openms-common/CHEMISTRY/HMDBMappingFile.tsv
/usr/share/openms-common/CHEMISTRY/MetaboliteIsoModel.scale
/usr/share/openms-common/CHEMISTRY/MetaboliteIsoModel.svm
/usr/share/openms-common/CHEMISTRY/MetaboliteIsoModelNoised2.scale
/usr/share/openms-common/CHEMISTRY/MetaboliteIsoModelNoised2.svm
/usr/share/openms-common/CHEMISTRY/MetaboliteIsoModelNoised5.scale
/usr/share/openms-common/CHEMISTRY/MetaboliteIsoModelNoised5.svm
/usr/share/openms-common/CHEMISTRY/MissedCleavage.model
/usr/share/openms-common/CHEMISTRY/NegativeAdducts.tsv
/usr/share/openms-common/CHEMISTRY/OMSSA_modification_mapping
/usr/share/openms-common/CHEMISTRY/PSI-MOD.obo
/usr/share/openms-common/CHEMISTRY/PositiveAdducts.tsv
/usr/share/openms-common/CHEMISTRY/Residues.xml
/usr/share/openms-common/CHEMISTRY/XLMOD.obo
/usr/share/openms-common/CHEMISTRY/XTandem_default_input.xml
/usr/share/openms-common/CHEMISTRY/unimod.xml
/usr/share/openms-common/CV/brenda.obo
/usr/share/openms-common/CV/goslim_goa.obo
/usr/share/openms-common/CV/psi-ms.obo
/usr/share/openms-common/CV/psi-mzdata.obo
/usr/share/openms-common/CV/qc-cv.obo
/usr/share/openms-common/CV/quality.obo
/usr/share/openms-common/CV/unimod.obo
/usr/share/openms-common/CV/unit.obo
/usr/share/openms-common/DESKTOP/TOPPAS.appdata.xml
/usr/share/openms-common/DESKTOP/TOPPAS.desktop
/usr/share/openms-common/DESKTOP/TOPPView.appdata.xml
/usr/share/openms-common/DESKTOP/TOPPView.desktop
/usr/share/openms-common/DESKTOP/readme.txt
/usr/share/openms-common/GUISTYLE/qtStyleSheet.qss
/usr/share/openms-common/IDPool/IDPool.txt
/usr/share/openms-common/IDPool/README
/usr/share/openms-common/MAPPING/TraML-mapping.xml
/usr/share/openms-common/MAPPING/ms-mapping.xml
/usr/share/openms-common/MAPPING/mzIdentML-mapping.xml
/usr/share/openms-common/MAPPING/mzdata-mapping.xml
/usr/share/openms-common/PIP/codebooks.data
/usr/share/openms-common/PIP/linearMapping.data
/usr/share/openms-common/SCHEMAS/CTD_0_3.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_0.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_1.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_2.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_3.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_4.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_5.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_6.xsd
/usr/share/openms-common/SCHEMAS/ConsensusXML_1_7.xsd
/usr/share/openms-common/SCHEMAS/CvMapping.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_0.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_1.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_2.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_3.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_4.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_5.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_6.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_7.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_8.xsd
/usr/share/openms-common/SCHEMAS/FeatureXML_1_9.xsd
/usr/share/openms-common/SCHEMAS/FuGElightv1.0.0.xsd
/usr/share/openms-common/SCHEMAS/IdXML_1_0.xsd
/usr/share/openms-common/SCHEMAS/IdXML_1_1.xsd
/usr/share/openms-common/SCHEMAS/IdXML_1_2.xsd
/usr/share/openms-common/SCHEMAS/IdXML_1_3.xsd
/usr/share/openms-common/SCHEMAS/IdXML_1_4.xsd
/usr/share/openms-common/SCHEMAS/IdXML_1_5.xsd
/usr/share/openms-common/SCHEMAS/Param_1_0.xsd
/usr/share/openms-common/SCHEMAS/Param_1_1.xsd
/usr/share/openms-common/SCHEMAS/Param_1_2.xsd
/usr/share/openms-common/SCHEMAS/Param_1_3.xsd
/usr/share/openms-common/SCHEMAS/Param_1_4.xsd
/usr/share/openms-common/SCHEMAS/Param_1_6_2.xsd
/usr/share/openms-common/SCHEMAS/ToolDescriptor_1_0.xsd
/usr/share/openms-common/SCHEMAS/TraML0.9.3.xsd
/usr/share/openms-common/SCHEMAS/TraML1.0.0.xsd
/usr/share/openms-common/SCHEMAS/TrafoXML_1_0.xsd
/usr/share/openms-common/SCHEMAS/TrafoXML_1_1.xsd
/usr/share/openms-common/SCHEMAS/general_types_1.0.xsd
/usr/share/openms-common/SCHEMAS/mzData_1_05.xsd
/usr/share/openms-common/SCHEMAS/mzIdentML1.0.0.xsd
/usr/share/openms-common/SCHEMAS/mzIdentML1.1.0.xsd
/usr/share/openms-common/SCHEMAS/mzML_1_00.xsd
/usr/share/openms-common/SCHEMAS/mzML_1_10.xsd
/usr/share/openms-common/SCHEMAS/mzML_idx_1_00.xsd
/usr/share/openms-common/SCHEMAS/mzML_idx_1_10.xsd
/usr/share/openms-common/SCHEMAS/mzQCML_0_0_5.xsd
/usr/share/openms-common/SCHEMAS/mzQuantML_1_0_0-rc2.xsd
/usr/share/openms-common/SCHEMAS/mzXML_2_1.xsd
/usr/share/openms-common/SCHEMAS/mzXML_3.1.xsd
/usr/share/openms-common/SCHEMAS/mzXML_3.1_mod.xsd
/usr/share/openms-common/SCHEMAS/mzXML_idx_3.1.xsd
/usr/share/openms-common/SCHEMAS/pepXML_v114.xsd
/usr/share/openms-common/SCHEMAS/protXML_v6.xsd
/usr/share/openms-common/SCHEMAS/qcML_0.0.7.xsd
/usr/share/openms-common/SCHEMAS/separation_technique_1.0.xsd
/usr/share/openms-common/SCHEMAS/xQuest_1_0.xsd
/usr/share/openms-common/SCRIPTS/InternalCalibration_Models.R
/usr/share/openms-common/SCRIPTS/InternalCalibration_Residuals.R
/usr/share/openms-common/SCRIPTS/ProduceQCFigures_acc.R
/usr/share/openms-common/SCRIPTS/ProduceQCFigures_idmap.R
/usr/share/openms-common/SCRIPTS/ProduceQCFigures_inj.R
/usr/share/openms-common/SCRIPTS/ProduceQCFigures_rt_acc.R
/usr/share/openms-common/SCRIPTS/ProduceQCFigures_setid.R
/usr/share/openms-common/SCRIPTS/ProduceQCFigures_tic.R
/usr/share/openms-common/SCRIPTS/Rscript_generic_example.R
/usr/share/openms-common/SCRIPTS/mzTab2tsv_PEP.R
/usr/share/openms-common/SCRIPTS/mzTab2tsv_PRT.R
/usr/share/openms-common/SCRIPTS/mzTab2tsv_PSM.R
/usr/share/openms-common/SCRIPTS/plot_trafo.R
/usr/share/openms-common/THIRDPARTY/ReadMe.txt
/usr/share/openms-common/TOOLS/EXTERNAL/Hardkloer.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/MSGFtoPercolator.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/MascotPercolator.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Percolator.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/QCExporter.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/RawDirConvert.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/ReadMe.txt
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_generic.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_mzTab2tsv_PEP.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_mzTab2tsv_PRT.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_mzTab2tsv_PSM.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_qcfigures_acc.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_qcfigures_idmap.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_qcfigures_rt_acc.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_qcfigures_setid.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_qcfigures_tic.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/Rscript_qcfigures_trapfill.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/TEMPLATE.ttd_
/usr/share/openms-common/TOOLS/EXTERNAL/TPP_RefreshParser.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/XTandemToPercolator.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/msconvert.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/LINUX/TPP_ProteinProphet.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/LINUX/mail.ttd
/usr/share/openms-common/TOOLS/EXTERNAL/WINDOWS/TPP_ProteinProphet.ttd
/usr/share/openms-common/XSL/APML_to_CSV.xsl
/usr/share/openms-common/XSL/ConsensusXML.xsl
/usr/share/openms-common/XSL/IdXML.xsl
/usr/share/openms-common/XSL/QcML_report_sheet.xsl
/usr/share/openms-common/XSL/index.html
/usr/share/openms-common/cmake/OpenMSConfig.cmake
/usr/share/openms-common/cmake/OpenMSConfigVersion.cmake
/usr/share/openms-common/cmake/OpenMSTargets-release.cmake
/usr/share/openms-common/cmake/OpenMSTargets.cmake
/usr/share/openms-common/examples/LCMS-centroided.featureXML
/usr/share/openms-common/examples/LCMS-centroided.mzML
/usr/share/openms-common/examples/peakpicker_tutorial_1.ini
/usr/share/openms-common/examples/peakpicker_tutorial_1.mzML
/usr/share/openms-common/examples/peakpicker_tutorial_1_baseline_and_noise_filtered.mzML
/usr/share/openms-common/examples/peakpicker_tutorial_1_baseline_filtered.mzML
/usr/share/openms-common/examples/peakpicker_tutorial_1_picked.mzML
/usr/share/openms-common/examples/peakpicker_tutorial_2.ini
/usr/share/openms-common/examples/peakpicker_tutorial_2.mzML
/usr/share/openms-common/examples/peakpicker_tutorial_2_picked.mzML
/usr/share/openms-common/examples/BSA/BSA1.mzML
/usr/share/openms-common/examples/BSA/BSA1_OMSSA.idXML
/usr/share/openms-common/examples/BSA/BSA2.mzML
/usr/share/openms-common/examples/BSA/BSA2_OMSSA.idXML
/usr/share/openms-common/examples/BSA/BSA3.mzML
/usr/share/openms-common/examples/BSA/BSA3_OMSSA.idXML
/usr/share/openms-common/examples/CHROMATOGRAMS/Spyogenes.chrom.mzML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F1.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F1.idXML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F1.mzML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F1_aligned.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F1_idmapped.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F2.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F2.idXML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F2.mzML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F2_aligned.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA1_F2_idmapped.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F1.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F1.idXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F1.mzML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F1_aligned.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F1_idmapped.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F2.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F2.idXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F2.mzML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F2_aligned.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA2_F2_idmapped.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F1.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F1.idXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F1.mzML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F1_aligned.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F1_idmapped.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F2.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F2.idXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F2.mzML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F2_aligned.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA3_F2_idmapped.featureXML
/usr/share/openms-common/examples/FRACTIONS/BSA_design.tsv
/usr/share/openms-common/examples/FRACTIONS/BSA_linked.consensusXML
/usr/share/openms-common/examples/ID/Ecoli_MS2_small.mzML
/usr/share/openms-common/examples/QCImporter/additional_tabular_data.csv
/usr/share/openms-common/examples/QCImporter/additional_tabular_mapping.csv
/usr/share/openms-common/examples/TOPPAS/BSA_Quantitation.toppas
/usr/share/openms-common/examples/TOPPAS/Ecoli_Identification.toppas
/usr/share/openms-common/examples/TOPPAS/GenericWrapper_Rscript-generic.toppas
/usr/share/openms-common/examples/TOPPAS/merger_tutorial.toppas
/usr/share/openms-common/examples/TOPPAS/peakpicker_tutorial.toppas
/usr/share/openms-common/examples/TOPPAS/data/BSA_Identification/18Protein_SoCe_Tr_detergents_trace_target_decoy.fasta
/usr/share/openms-common/examples/TOPPAS/data/BSA_Identification/18Protein_SoCe_Tr_detergents_trace_target_decoy.fasta.phr
/usr/share/openms-common/examples/TOPPAS/data/BSA_Identification/18Protein_SoCe_Tr_detergents_trace_target_decoy.fasta.pin
/usr/share/openms-common/examples/TOPPAS/data/BSA_Identification/18Protein_SoCe_Tr_detergents_trace_target_decoy.fasta.psd
/usr/share/openms-common/examples/TOPPAS/data/BSA_Identification/18Protein_SoCe_Tr_detergents_trace_target_decoy.fasta.psi
/usr/share/openms-common/examples/TOPPAS/data/BSA_Identification/18Protein_SoCe_Tr_detergents_trace_target_decoy.fasta.psq
/usr/share/openms-common/examples/TOPPAS/data/Identification/target_decoy_Ecoli_K12_TaxID_83333.proteomes.fasta
/usr/share/openms-common/examples/TOPPAS/data/Identification/target_decoy_Ecoli_K12_TaxID_83333.proteomes.fasta.phr
/usr/share/openms-common/examples/TOPPAS/data/Identification/target_decoy_Ecoli_K12_TaxID_83333.proteomes.fasta.pin
/usr/share/openms-common/examples/TOPPAS/data/Identification/target_decoy_Ecoli_K12_TaxID_83333.proteomes.fasta.pog
/usr/share/openms-common/examples/TOPPAS/data/Identification/target_decoy_Ecoli_K12_TaxID_83333.proteomes.fasta.psd
/usr/share/openms-common/examples/TOPPAS/data/Identification/target_decoy_Ecoli_K12_TaxID_83333.proteomes.fasta.psi
/usr/share/openms-common/examples/TOPPAS/data/Identification/target_decoy_Ecoli_K12_TaxID_83333.proteomes.fasta.psq
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_1.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_10.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_11.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_12.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_2.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_3.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_4.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_5.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_6.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_7.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_8.mzML
/usr/share/openms-common/examples/TOPPAS/data/merger_tutorial/rt_9.mzML
/usr/share/openms-common/examples/external_code/CMakeLists.txt
/usr/share/openms-common/examples/external_code/ExampleLibraryFile.cpp
/usr/share/openms-common/examples/external_code/ExampleLibraryFile.h
/usr/share/openms-common/examples/external_code/Main.cpp
/usr/share/openms-common/examples/external_code/README.md
/usr/share/openms-common/examples/simulation/DTPredict.model
/usr/share/openms-common/examples/simulation/DTPredict.model_additional_parameters
/usr/share/openms-common/examples/simulation/DTPredict.model_samples
/usr/share/openms-common/examples/simulation/FASTAProteinAbundanceSampling.py
/usr/share/openms-common/examples/simulation/MSMSim.model
/usr/share/openms-common/examples/simulation/README
/usr/share/openms-common/examples/simulation/RTPredict.model
/usr/share/openms-common/examples/simulation/RTPredict.model_additional_parameters
/usr/share/openms-common/examples/simulation/RTPredict.model_samples
/usr/share/openms-common/examples/simulation/SvmMSim.model
/usr/share/openms-common/examples/simulation/SvmModelSet.model
/usr/share/openms-common/examples/simulation/contaminants.csv
/usr/share/openms-common/examples/simulation/model_11__1_class.svm
/usr/share/openms-common/examples/simulation/model_11__1_reg.svm
/usr/share/openms-common/examples/simulation/testModel_11__1_class.svm
/usr/share/openms-common/examples/simulation/testModel_11__1_reg.svm

Changelog

See openms_2.4.0-real-1_all.deb changelog.

See Also

Package Description
openms-doc_2.4.0-real-1_all.deb package for LC/MS data management and analysis - documentation
openms_2.4.0-real-1_all.deb package for LC/MS data management and analysis
openmsx-catapult_0.15.0-1_i386.deb GUI for openMSX
openmsx-data_0.15.0-2_all.deb datafiles for openMSX, an MSX emulator
openmsx-debugger_0.1~git20170806-1_i386.deb Graphical debugger for openMSX
openmsx_0.15.0-2_i386.deb MSX emulator that aims for perfection
openmx-data_3.8.5+dfsg1-1_all.deb package for nano-scale material simulations (data)
openmx_3.8.5+dfsg1-1_i386.deb package for nano-scale material simulations
opennebula-context_4.14.0-1_all.deb contextualization package
openni-doc_1.5.4.0+dfsg-2_all.deb developer documentation for OpenNI frameworks
openni-utils_1.5.4.0+dfsg-2_i386.deb debug and test utilities OpenNI framework
openni2-doc_2.2.0.33+dfsg-11_all.deb developer documentation for OpenNI frameworks
openni2-utils_2.2.0.33+dfsg-11_i386.deb debug and test utilities OpenNI2 framework
opennlp_1.9.1-1_all.deb wrapper for Apache OpenNLP natural language text processing toolkit
openntpd_6.2p3-4_i386.deb OpenBSD NTP daemon
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