htslib-test_1.9-11_all.deb


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Description

htslib-test - Test data for HTSlib

Property Value
Distribution Debian Sid
Repository Debian Main i386
Package filename htslib-test_1.9-11_all.deb
Package name htslib-test
Package version 1.9
Package release 11
Package architecture all
Package type deb
Category libs role::shared-lib
Homepage https://github.com/samtools/htslib
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 894.44 KB
Installed size 6.26 MB

Alternatives

Package Version Architecture Repository
htslib-test_1.9-11_all.deb 1.9 all Debian Main
htslib-test - - -

Requires

Name Value
libhts-private-dev -
perl:any -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package htslib-test_1.9-11_all.deb
Source Package htslib

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install htslib-test deb package:
    # sudo apt-get install htslib-test

Files

Path
/usr/share/doc/htslib-test/changelog.Debian.gz
/usr/share/doc/htslib-test/changelog.gz
/usr/share/doc/htslib-test/copyright
/usr/share/doc/libhts-dev/run-unit-test
/usr/share/htslib-test/Makefile
/usr/share/htslib-test/bcf_sr_sort.c
/usr/share/htslib-test/bcf_sr_sort.h
/usr/share/htslib-test/bgzf.c
/usr/share/htslib-test/bgzip.c
/usr/share/htslib-test/config.h
/usr/share/htslib-test/config.mk
/usr/share/htslib-test/errmod.c
/usr/share/htslib-test/faidx.c
/usr/share/htslib-test/hfile.c
/usr/share/htslib-test/hfile_gcs.c
/usr/share/htslib-test/hfile_internal.h
/usr/share/htslib-test/hfile_libcurl.c
/usr/share/htslib-test/hfile_net.c
/usr/share/htslib-test/hfile_s3.c
/usr/share/htslib-test/hts.c
/usr/share/htslib-test/hts_internal.h
/usr/share/htslib-test/hts_os.c
/usr/share/htslib-test/htsfile.c
/usr/share/htslib-test/htslib.mk
/usr/share/htslib-test/htslib_vars.mk
/usr/share/htslib-test/kfunc.c
/usr/share/htslib-test/knetfile.c
/usr/share/htslib-test/kstring.c
/usr/share/htslib-test/md5.c
/usr/share/htslib-test/multipart.c
/usr/share/htslib-test/plugin.c
/usr/share/htslib-test/probaln.c
/usr/share/htslib-test/realn.c
/usr/share/htslib-test/regidx.c
/usr/share/htslib-test/sam.c
/usr/share/htslib-test/synced_bcf_reader.c
/usr/share/htslib-test/tabix.c
/usr/share/htslib-test/tbx.c
/usr/share/htslib-test/textutils.c
/usr/share/htslib-test/textutils_internal.h
/usr/share/htslib-test/thread_pool.c
/usr/share/htslib-test/thread_pool_internal.h
/usr/share/htslib-test/vcf.c
/usr/share/htslib-test/vcf_sweep.c
/usr/share/htslib-test/vcfutils.c
/usr/share/htslib-test/version.h
/usr/share/htslib-test/version.sh
/usr/share/htslib-test/cram/cram.h
/usr/share/htslib-test/cram/cram_codecs.c
/usr/share/htslib-test/cram/cram_codecs.h
/usr/share/htslib-test/cram/cram_decode.c
/usr/share/htslib-test/cram/cram_decode.h
/usr/share/htslib-test/cram/cram_encode.c
/usr/share/htslib-test/cram/cram_encode.h
/usr/share/htslib-test/cram/cram_external.c
/usr/share/htslib-test/cram/cram_index.c
/usr/share/htslib-test/cram/cram_index.h
/usr/share/htslib-test/cram/cram_io.c
/usr/share/htslib-test/cram/cram_io.h
/usr/share/htslib-test/cram/cram_samtools.c
/usr/share/htslib-test/cram/cram_samtools.h
/usr/share/htslib-test/cram/cram_stats.c
/usr/share/htslib-test/cram/cram_stats.h
/usr/share/htslib-test/cram/cram_structs.h
/usr/share/htslib-test/cram/files.c
/usr/share/htslib-test/cram/mFILE.c
/usr/share/htslib-test/cram/mFILE.h
/usr/share/htslib-test/cram/misc.h
/usr/share/htslib-test/cram/open_trace_file.c
/usr/share/htslib-test/cram/open_trace_file.h
/usr/share/htslib-test/cram/os.h
/usr/share/htslib-test/cram/pooled_alloc.c
/usr/share/htslib-test/cram/pooled_alloc.h
/usr/share/htslib-test/cram/rANS_byte.h
/usr/share/htslib-test/cram/rANS_static.c
/usr/share/htslib-test/cram/rANS_static.h
/usr/share/htslib-test/cram/sam_header.c
/usr/share/htslib-test/cram/sam_header.h
/usr/share/htslib-test/cram/string_alloc.c
/usr/share/htslib-test/cram/string_alloc.h
/usr/share/htslib-test/os/lzma_stub.h
/usr/share/htslib-test/os/rand.c
/usr/share/htslib-test/test/auxf#values.sam
/usr/share/htslib-test/test/auxf#values_java.cram
/usr/share/htslib-test/test/auxf.fa
/usr/share/htslib-test/test/auxf.fa.fai
/usr/share/htslib-test/test/bgziptest.txt
/usr/share/htslib-test/test/bgziptest.txt.gz
/usr/share/htslib-test/test/bgziptest.txt.gz.gzi
/usr/share/htslib-test/test/c1#bounds.sam
/usr/share/htslib-test/test/c1#clip.sam
/usr/share/htslib-test/test/c1#noseq.sam
/usr/share/htslib-test/test/c1#pad1.sam
/usr/share/htslib-test/test/c1#pad2.sam
/usr/share/htslib-test/test/c1#pad3.sam
/usr/share/htslib-test/test/c1#unknown.sam
/usr/share/htslib-test/test/c1.fa
/usr/share/htslib-test/test/c1.fa.fai
/usr/share/htslib-test/test/c2#pad.sam
/usr/share/htslib-test/test/c2.fa
/usr/share/htslib-test/test/c2.fa.fai
/usr/share/htslib-test/test/ce#1.sam
/usr/share/htslib-test/test/ce#1000.sam
/usr/share/htslib-test/test/ce#2.sam
/usr/share/htslib-test/test/ce#5.sam
/usr/share/htslib-test/test/ce#5b.sam
/usr/share/htslib-test/test/ce#5b_java.cram
/usr/share/htslib-test/test/ce#large_seq.sam
/usr/share/htslib-test/test/ce#supp.sam
/usr/share/htslib-test/test/ce#tag_depadded.sam
/usr/share/htslib-test/test/ce#tag_padded.sam
/usr/share/htslib-test/test/ce#unmap.sam
/usr/share/htslib-test/test/ce#unmap1.sam
/usr/share/htslib-test/test/ce#unmap2.sam
/usr/share/htslib-test/test/ce.fa
/usr/share/htslib-test/test/ce.fa.fai
/usr/share/htslib-test/test/compare_sam.pl
/usr/share/htslib-test/test/cross_validate.sh
/usr/share/htslib-test/test/faidx.fa
/usr/share/htslib-test/test/fastqs.fq
/usr/share/htslib-test/test/fastqs_README.txt
/usr/share/htslib-test/test/fieldarith.c
/usr/share/htslib-test/test/fieldarith.sam
/usr/share/htslib-test/test/formatcols.vcf
/usr/share/htslib-test/test/formatmissing-out.vcf
/usr/share/htslib-test/test/formatmissing.vcf
/usr/share/htslib-test/test/hfile.c
/usr/share/htslib-test/test/hts_endian.c
/usr/share/htslib-test/test/md#1.sam
/usr/share/htslib-test/test/md.fa
/usr/share/htslib-test/test/md.fa.fai
/usr/share/htslib-test/test/noroundtrip-out.vcf
/usr/share/htslib-test/test/noroundtrip.vcf
/usr/share/htslib-test/test/range.bam
/usr/share/htslib-test/test/range.bam.bai
/usr/share/htslib-test/test/range.cram
/usr/share/htslib-test/test/range.cram.crai
/usr/share/htslib-test/test/range.out
/usr/share/htslib-test/test/realn01.fa
/usr/share/htslib-test/test/realn01.fa.fai
/usr/share/htslib-test/test/realn01.sam
/usr/share/htslib-test/test/realn01_exp-a.sam
/usr/share/htslib-test/test/realn01_exp-e.sam
/usr/share/htslib-test/test/realn01_exp.sam
/usr/share/htslib-test/test/realn02-r.sam
/usr/share/htslib-test/test/realn02.fa
/usr/share/htslib-test/test/realn02.fa.fai
/usr/share/htslib-test/test/realn02.sam
/usr/share/htslib-test/test/realn02_exp-a.sam
/usr/share/htslib-test/test/realn02_exp-e.sam
/usr/share/htslib-test/test/realn02_exp.sam
/usr/share/htslib-test/test/sam.c
/usr/share/htslib-test/test/test-bcf-sr.c
/usr/share/htslib-test/test/test-bcf-sr.pl
/usr/share/htslib-test/test/test-bcf-translate.c
/usr/share/htslib-test/test/test-bcf-translate.out
/usr/share/htslib-test/test/test-logging.pl
/usr/share/htslib-test/test/test-regidx.c
/usr/share/htslib-test/test/test-vcf-api.c
/usr/share/htslib-test/test/test-vcf-api.out
/usr/share/htslib-test/test/test-vcf-hdr-in.vcf
/usr/share/htslib-test/test/test-vcf-hdr.out
/usr/share/htslib-test/test/test-vcf-sweep.c
/usr/share/htslib-test/test/test-vcf-sweep.out
/usr/share/htslib-test/test/test.pl
/usr/share/htslib-test/test/test_bgzf.c
/usr/share/htslib-test/test/test_realn.c
/usr/share/htslib-test/test/test_view.c
/usr/share/htslib-test/test/thrash_threads1.c
/usr/share/htslib-test/test/thrash_threads2.c
/usr/share/htslib-test/test/thrash_threads3.c
/usr/share/htslib-test/test/thrash_threads4.c
/usr/share/htslib-test/test/thrash_threads5.c
/usr/share/htslib-test/test/thrash_threads6.c
/usr/share/htslib-test/test/thread_pool.md
/usr/share/htslib-test/test/xx#blank.sam
/usr/share/htslib-test/test/xx#large_aux.sam
/usr/share/htslib-test/test/xx#large_aux2.sam
/usr/share/htslib-test/test/xx#large_aux_java.cram
/usr/share/htslib-test/test/xx#minimal.sam
/usr/share/htslib-test/test/xx#pair.sam
/usr/share/htslib-test/test/xx#repeated.sam
/usr/share/htslib-test/test/xx#rg.sam
/usr/share/htslib-test/test/xx#tlen.sam
/usr/share/htslib-test/test/xx#tlen2.sam
/usr/share/htslib-test/test/xx#triplet.sam
/usr/share/htslib-test/test/xx#unsorted.sam
/usr/share/htslib-test/test/xx.fa
/usr/share/htslib-test/test/xx.fa.fai
/usr/share/htslib-test/test/tabix/bed_file.Y.100200.out
/usr/share/htslib-test/test/tabix/bed_file.bed
/usr/share/htslib-test/test/tabix/gff_file.X.2934832.2935190.out
/usr/share/htslib-test/test/tabix/gff_file.gff
/usr/share/htslib-test/test/tabix/large_chr.20.1.2147483647.out
/usr/share/htslib-test/test/tabix/large_chr.vcf
/usr/share/htslib-test/test/tabix/tabix.tst
/usr/share/htslib-test/test/tabix/test-tabix.sh
/usr/share/htslib-test/test/tabix/vcf_file.1.3000151.out
/usr/share/htslib-test/test/tabix/vcf_file.2.3199812.out
/usr/share/htslib-test/test/tabix/vcf_file.vcf
/usr/share/lintian/overrides/htslib-test

Changelog

2019-04-24 - Andreas Tille <tille@debian.org>
htslib (1.9-11) unstable; urgency=medium
* Install README at request of upstream
* Stop building on any-i386
Closes: #927353
2019-01-16 - Michael R. Crusoe <michael.crusoe@gmail.com>
htslib (1.9-10) unstable; urgency=medium
* Bring the libdeflate, GCS, and S3 updates back to unstable.
2019-01-16 - Michael R. Crusoe <michael.crusoe@gmail.com>
htslib (1.9-10~1libdeflate) experimental; urgency=medium
* Enable GCS and AWS S3 backends.
2019-01-15 - Michael R. Crusoe <michael.crusoe@gmail.com>
htslib (1.9-10~0libdeflate) experimental; urgency=medium
* Try libdeflate again.
2019-01-15 - Michael R. Crusoe <michael.crusoe@gmail.com>
htslib (1.9-9) unstable; urgency=medium
* Bring the ppc64el & i386 pkg-config enhancements to unstable.
2019-01-02 - Michael R. Crusoe <michael.crusoe@gmail.com>
htslib (1.9-9~floatingpoint0) experimental; urgency=low
* add SSE flags for i386 to the pkg-config.
* Try the ppc64el targeted floating point patch again & re-enable -O2
2018-12-31 - Michael R. Crusoe <michael.crusoe@gmail.com>
htslib (1.9-8) unstable; urgency=medium
* Disable optimization on ppc64el to unblock this and many other packages
migration to testing.
2018-12-19 - Michael R. Crusoe <michael.crusoe@gmail.com>
htslib (1.9-7) unstable; urgency=medium
* Bring i386 build enhancements to unstable.
2018-12-18 - Michael R. Crusoe <michael.crusoe@gmail.com>
htslib (1.9-7~1~i386~1) experimental; urgency=medium
* Turn on SSE for i386, as suggested at
https://github.com/samtools/htslib/issues/565#issuecomment-448028771
2018-12-10 - Michael R. Crusoe <michael.crusoe@gmail.com>
htslib (1.9-7~0~i386~gcc7~1) experimental; urgency=medium
* Try dropping to gcc-7 on i386*

See Also

Package Description
httest_2.4.23-1_i386.deb HTTP test tool
http-icons_0~20041010-1_all.deb classic MIME icons
httpcode_0.6-1_all.deb Explains the meaning of an HTTP status code on the command line
httpdirfs_1.1.10-2_i386.deb filesystem client for HTTP directory listings
httperf_0.9.0-9_i386.deb HTTP server performance tester
httpfs2_0.1.4-1.1_i386.deb FUSE filesystem for mounting files from http servers
httpie_1.0.3-2_all.deb CLI, cURL-like tool for humans
httping_2.5-5_i386.deb ping-like program for http-requests
httpry-daemon_0.1.8-1_all.deb HTTP logging and information retrieval tool - daemon
httpry-tools_0.1.8-1_all.deb HTTP logging and information retrieval tool - log parsing scripts
httpry_0.1.8-1_i386.deb HTTP logging and information retrieval tool
httptunnel_3.3+dfsg-4+b1_i386.deb Tunnels a data stream in HTTP requests
httrack-doc_3.49.2-1_all.deb Httrack website copier additional documentation
httrack_3.49.2-1_i386.deb Copy websites to your computer (Offline browser)
httraqt_1.4.9-1_i386.deb program for downloading of internet sites
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