abyss_2.1.5-7_i386.deb


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Description

abyss - de novo, parallel, sequence assembler for short reads

Property Value
Distribution Debian Sid
Repository Debian Main i386
Package filename abyss_2.1.5-7_i386.deb
Package name abyss
Package version 2.1.5
Package release 7
Package architecture i386
Package type deb
Category field::biology implemented-in::c interface::commandline role::program science
Homepage http://www.bcgsc.ca/platform/bioinfo/software/abyss
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 2.89 MB
Installed size 9.12 MB

Alternatives

Package Version Architecture Repository
abyss_2.1.5-7_amd64.deb 2.1.5 amd64 Debian Main
abyss - - -

Requires

Name Value
bsdmainutils -
libc6 >= 2.28
libgcc1 >= 1:4.2
libgomp1 >= 4.9
libopenmpi3 -
libsqlite3-0 >= 3.5.9
libstdc++6 >= 5.2
make -
openmpi-bin -
openmpi-common -
perl:any -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package abyss_2.1.5-7_i386.deb
Source Package abyss

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install abyss deb package:
    # sudo apt-get install abyss

Files

Path
/usr/bin/DistanceEst
/usr/bin/abyss-fixmate
/usr/bin/abyss-pe
/usr/lib/abyss/ABYSS
/usr/lib/abyss/ABYSS-P
/usr/lib/abyss/AdjList
/usr/lib/abyss/Consensus
/usr/lib/abyss/DAssembler
/usr/lib/abyss/DistanceEst
/usr/lib/abyss/DistanceEst-ssq
/usr/lib/abyss/KAligner
/usr/lib/abyss/MergeContigs
/usr/lib/abyss/MergePaths
/usr/lib/abyss/Overlap
/usr/lib/abyss/ParseAligns
/usr/lib/abyss/PathConsensus
/usr/lib/abyss/PathOverlap
/usr/lib/abyss/PopBubbles
/usr/lib/abyss/SimpleGraph
/usr/lib/abyss/abyss-align
/usr/lib/abyss/abyss-bloom
/usr/lib/abyss/abyss-bloom-dbg
/usr/lib/abyss/abyss-bloom-dist.mk
/usr/lib/abyss/abyss-bowtie
/usr/lib/abyss/abyss-bowtie2
/usr/lib/abyss/abyss-bwa
/usr/lib/abyss/abyss-bwamem
/usr/lib/abyss/abyss-bwasw
/usr/lib/abyss/abyss-db-csv
/usr/lib/abyss/abyss-db-txt
/usr/lib/abyss/abyss-dida
/usr/lib/abyss/abyss-fac
/usr/lib/abyss/abyss-fatoagp
/usr/lib/abyss/abyss-filtergraph
/usr/lib/abyss/abyss-fixmate
/usr/lib/abyss/abyss-fixmate-ssq
/usr/lib/abyss/abyss-gapfill
/usr/lib/abyss/abyss-gc
/usr/lib/abyss/abyss-index
/usr/lib/abyss/abyss-junction
/usr/lib/abyss/abyss-kaligner
/usr/lib/abyss/abyss-layout
/usr/lib/abyss/abyss-longseqdist
/usr/lib/abyss/abyss-map
/usr/lib/abyss/abyss-map-ssq
/usr/lib/abyss/abyss-mergepairs
/usr/lib/abyss/abyss-overlap
/usr/lib/abyss/abyss-paired-dbg
/usr/lib/abyss/abyss-paired-dbg-mpi
/usr/lib/abyss/abyss-pe
/usr/lib/abyss/abyss-samtoafg
/usr/lib/abyss/abyss-scaffold
/usr/lib/abyss/abyss-sealer
/usr/lib/abyss/abyss-stack-size
/usr/lib/abyss/abyss-tabtomd
/usr/lib/abyss/abyss-todot
/usr/lib/abyss/abyss-tofastq
/usr/lib/abyss/konnector
/usr/lib/abyss/logcounter
/usr/share/doc-base/abyss-flowcharts
/usr/share/doc/abyss/CITATION.bib
/usr/share/doc/abyss/CITATION.md
/usr/share/doc/abyss/README.html
/usr/share/doc/abyss/README.md.gz
/usr/share/doc/abyss/README.test
/usr/share/doc/abyss/changelog.Debian.gz
/usr/share/doc/abyss/changelog.gz
/usr/share/doc/abyss/copyright
/usr/share/doc/abyss/flowchart.pdf.gz
/usr/share/doc/abyss/flowchart_simplified.pdf.gz
/usr/share/doc/abyss/run-unit-test
/usr/share/doc/abyss/test-data/reads1.fastq.gz
/usr/share/doc/abyss/test-data/reads2.fastq.gz
/usr/share/man/man1/ABYSS.1.gz
/usr/share/man/man1/DistanceEst.1.gz
/usr/share/man/man1/abyss-fixmate.1.gz
/usr/share/man/man1/abyss-pe.1.gz
/usr/share/man/man1/abyss-tofastq.1.gz

Changelog

2019-02-17 - Michael R. Crusoe <michael.crusoe@gmail.com>
abyss (2.1.5-7) unstable; urgency=medium
* Add myself as an uploader.
* The package openmpi-bin is now a required dependency for the abyss
binary package. Many thanks to ci.debian.org for bringing this to light.
* Fix "implicit declaration of function"s in dialign/museq.c
* Fix some spelling typos
* Register the flowchart PDFs with doc-base
2019-02-16 - Michael R. Crusoe <michael.crusoe@gmail.com>
abyss (2.1.5-6) unstable; urgency=high
* Team upload.
* Add dependency on openmpi-common for error messages
2019-02-15 - Michael R. Crusoe <michael.crusoe@gmail.com>
abyss (2.1.5-5) unstable; urgency=medium
* Team upload.
* Fix MPI build. Closes: #922351
2019-01-23 - Andreas Tille <tille@debian.org>
abyss (2.1.5-4) unstable; urgency=medium
* Fix build on hurd due to missing header file (thanks for the patch
to Samuel Thibault <sthibault@debian.org>)
Closes: #920240
* debhelper 12
2019-01-09 - Andreas Tille <tille@debian.org>
abyss (2.1.5-3) unstable; urgency=medium
* Re-add armel architecture
Closes: #918735
2019-01-08 - Andreas Tille <tille@debian.org>
abyss (2.1.5-2) unstable; urgency=medium
* Restrict set of architectures to those where package is known to
build (or never was successfully build)
Closes: #918575
* Standards-Version: 4.3.0
2018-12-08 - Andreas Tille <tille@debian.org>
abyss (2.1.5-1) unstable; urgency=medium
* Fix strict alignment violation on sparc64 (Thanks to  David Matthew Mattli
and James Clarke)
Closes: #889147
* New upstream version
* Remove trailing whitespace in debian/changelog
* Remove trailing whitespace in debian/copyright
2018-09-26 - Andreas Tille <tille@debian.org>
abyss (2.1.1-1) unstable; urgency=medium
* New upstream version
* Standards-Version: 4.2.1
* Fix Perl interpreter path
2018-04-20 - Andreas Tille <tille@debian.org>
abyss (2.1.0-1) unstable; urgency=medium
* New upstream version
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
2018-03-20 - Andreas Tille <tille@debian.org>
abyss (2.0.3-1) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata: RRID -> SciCrunch
[ Andreas Tille ]
* New upstream version
* Standards-Version: 4.1.3
* debhelper 11

See Also

Package Description
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accerciser_3.22.0-7_all.deb interactive Python accessibility explorer for the GNOME desktop
accountsservice_0.6.45-2_i386.deb query and manipulate user account information
accountwizard_18.08.3-1_i386.deb wizard for KDE PIM applications account setup
acct_6.6.4-2_i386.deb GNU Accounting utilities for process and login accounting
ace-gperf_6.4.5+dfsg-1+b12_i386.deb ACE perfect hash function generator
ace-netsvcs_6.4.5+dfsg-1+b12_i386.deb ACE network service implementations
ace-of-penguins_1.5~rc2-3_i386.deb penguin-themed solitaire games
ace_0.0.5-3+b11_i386.deb HTML template engine for Go (command-line tool)
acedb-other-belvu_4.9.39+dfsg.02-4_all.deb transitional package for belvu
acedb-other-dotter_4.9.39+dfsg.02-4_all.deb transitional package for dotter
acedb-other_4.9.39+dfsg.02-4_i386.deb retrieval of DNA or protein sequences
aces3-data_3.0.8-6_all.deb Advanced Concepts in Electronic Structure III
aces3_3.0.8-6_i386.deb Advanced Concepts in Electronic Structure III
acetoneiso_2.4-3_i386.deb feature-rich application to mount and manage CD and DVD images
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