wigeon_20101212+dfsg1-2_all.deb


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Description

wigeon - reimplementation of the Pintail 16S DNA anomaly detection utility

Property Value
Distribution Debian Sid
Repository Debian Main amd64
Package filename wigeon_20101212+dfsg1-2_all.deb
Package name wigeon
Package version 20101212+dfsg1
Package release 2
Package architecture all
Package type deb
Category science
Homepage http://microbiomeutil.sourceforge.net/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 29.32 KB
Installed size 168.00 KB

Alternatives

Package Version Architecture Repository
wigeon_20101212+dfsg1-2_all.deb 20101212+dfsg1 all Debian Main
wigeon - - -

Requires

Name Value
microbiomeutil-data -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package wigeon_20101212+dfsg1-2_all.deb
Source Package microbiomeutil

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install wigeon deb package:
    # sudo apt-get install wigeon

Files

Path
/usr/bin/cm_to_wigeon
/usr/bin/wigeon
/usr/lib/WigeoN/README
/usr/lib/WigeoN/WigeoN.pl
/usr/lib/WigeoN/run_CM_to_WigeoN.pl
/usr/lib/WigeoN/run_WigeoN.pl
/usr/lib/WigeoN/PerlLib/BHStats.pm
/usr/lib/WigeoN/PerlLib/CdbTools.pm
/usr/lib/WigeoN/PerlLib/Fasta_reader.pm
/usr/lib/WigeoN/data/DE_quantiles.dat
/usr/lib/WigeoN/data/eco.prokMSA
/usr/lib/WigeoN/data/rRNA16S.gold.NAST_ALIGNED.fasta.cons
/usr/lib/WigeoN/util/all_vs_all_WigeoN.pl
/usr/lib/WigeoN/util/apply_eco_Mask.pl
/usr/lib/WigeoN/util/compute_quant_bins.pl
/usr/lib/WigeoN/util/eco.prokMSA
/usr/lib/WigeoN/util/eco_nast_freq.pl
/usr/lib/WigeoN/util/makeConservationProfile.pl
/usr/lib/WigeoN/util/smooth.pl
/usr/share/doc/wigeon/README
/usr/share/doc/wigeon/changelog.Debian.gz
/usr/share/doc/wigeon/copyright
/usr/share/doc/wigeon/examples
/usr/share/man/man1/cm_to_wigeon.1.gz
/usr/share/man/man1/wigeon.1.gz

Changelog

2018-07-05 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212+dfsg1-2) unstable; urgency=low
[ Steffen Moeller ]
* debian/upstream/metadata:
- Added references to registries
- yamllint cleanliness
[ Andreas Tille ]
* Remove unneeded get-orig-source target
* Remove Tim Booth from Uploaders (thanks for your work, Tim)
* Secure URI in watch file
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
* hardening=+all
2016-01-20 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212+dfsg1-1) unstable; urgency=low
* debian/copyright: s/BSD-like/BSD-3-clause/
* Moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
* Cleanup d/rules
* Fix build time tests and run these
* Add doc-base file
* d/watch: add missing repacksuffix
* Moved packaging from SVN to Git
* Cleaning up log files from past test runs
* Add autopkgtest
2013-07-22 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212+dfsg-1) unstable; urgency=low
* Initial release to Debian (Closes: #711086)
* Remove copyrighted logo images from upstream tarball (the logo is
only used in very short doc which works perfectly without this image)
* debian/control: Use anonscm Vcs addresses
2013-06-05 - Tim Booth <tbooth@ceh.ac.uk>
microbiomeutil (20101212-1ubuntu8) precise; urgency=low
* Bio-Linux rebuild with Andreas' fixes  
* ChimeraSlayer run from QIIME was not working.  Need to pre-compute
index files and add them to RESOURCES directory
* Also added missing direct dep on blast2
2013-06-04 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212-2) unstable; urgency=low
* debian/copyright: DEP5 copyright
* debian/control:
- Added myself to uploaders
- Priority: optional (as per Debian Med policy)
- Droped DM-Upload-Allowed
- Standards-Version: 3.9.4
- Debhelper 9 (also d/compat)
- Dropped explicit quilt Build-Dependends
- better formatting
- Enhance long descriptions
* debian/rules:
- remove "--with quilt" because this is specified in source format
- Use xz compression for binaries
* debian/rules, debian/*.install, debian/*.links:
Rather use the usual debhelper input files
* Remove unneeded debian/README.* files and create debian/upstream
file with citation information
* Removed debian/{ChimeraSlayer,microbiomeutil.install} because
unneeded
* debian/*.1: Wrote manpages
* debian/microbiomeutil.links: Synonyms with camel case spelling
as in the provided documentation
* debian/patches/hardening.patch: Enable propagation of hardening options
2013-06-03 - Tim Booth <tbooth@ceh.ac.uk>
microbiomeutil (20101212-1ubuntu6) lucid; urgency=low
* Another patch needed to Perl code due to inappropriate use of
FindBin 
* Move to /usr/lib rather than /usr/share as per Lintian warnings.
* Set --with quilt on dh.  (Possibly not needed now?)
* Added better descriptions in debian/control
2011-04-11 - Tim Booth <tbooth@ceh.ac.uk>
microbiomeutil (20101212-1ubuntu1) lucid; urgency=low
* Split package into 4 binary packages.
2011-03-30 - Steffen Moeller <moeller@debian.org>
microbiomeutil (2010-11-1) UNRELEASED; urgency=low
* New upstream
2010-12-02 - Steffen Moeller <moeller@debian.org>
microbiomeutil (2010-11-02-1) UNRELEASED; urgency=low
* Initial packaging

See Also

Package Description
wiggle_1.1-1_amd64.deb apply patches with conflicting changes
wiipdf_1.4-2+b2_amd64.deb present a PDF file using your wiimote
wiki2beamer_0.9.5-1_all.deb Tool to create LaTeX beamer presentations in wiki syntax
wikipedia2text_0.13-1_all.deb displays Wikipedia articles on the command line
wikitrans_1.3-1_all.deb MediaWiki markup translator (utility)
wildmidi_0.4.3-1_amd64.deb software MIDI player
wiliki_0.6.2-1_all.deb Yet another Wiki clone written in Scheme
wily_0.13.41-7.3_amd64.deb A work-alike of the Acme programming environment for Plan 9
wims-help_4.01-3_all.deb help files for wims
wims-java-applets_4.15d~dfsg1-3_all.deb applets for modules used by WIMS
wims-modules_4.15d~dfsg1-3_all.deb minimal set of modules used by WIMS
wims-moodle_4.0-18_all.deb module for Moodle featuring Wims mini-classes
wims_4.15d~dfsg1-3_amd64.deb server for educational content: courses, exercises, and exams
wimtools_1.13.0-1+b1_amd64.deb Tools for manipulating Windows Imaging files
win-iconv-mingw-w64-dev_0.0.8-2_all.deb iconv implementation using Windows API (for cross-building)
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