topp_2.4.0-real-1+b1_amd64.deb


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Description

topp - set of programs implementing The OpenMS Proteomic Pipeline

Property Value
Distribution Debian Sid
Repository Debian Main amd64
Package filename topp_2.4.0-real-1+b1_amd64.deb
Package name topp
Package version 2.4.0
Package release real-1+b1
Package architecture amd64
Package type deb
Category science uitoolkit::qt
Homepage http://www.openms.de
License -
Maintainer The Debichem Group <debichem-devel@lists.alioth.debian.org>
Download size 2.67 MB
Installed size 15.14 MB

Alternatives

Package Version Architecture Repository
topp_2.4.0-real-1_i386.deb 2.4.0 i386 Debian Main
topp - - -

Requires

Name Value
libboost-regex1.67.0 >= 1.67.0-10
libc6 >= 2.14
libgcc1 >= 1:3.0
libgomp1 >= 6
libopenms2.4.0 = 2.4.0-real-1+b1
libqt5core5a >= 5.11.0~rc1
libqt5gui5 >= 5.8.0
libqt5widgets5 >= 5.7.0
libstdc++6 >= 9
libxerces-c3.2 -
openms-common = 2.4.0-real-1

Download

Type URL
Mirror ftp.br.debian.org
Binary Package topp_2.4.0-real-1+b1_amd64.deb
Source Package openms

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install topp deb package:
    # sudo apt-get install topp

Files

Path
/usr/bin/AccurateMassSearch
/usr/bin/AssayGeneratorMetabo
/usr/bin/BaselineFilter
/usr/bin/CVInspector
/usr/bin/ClusterMassTraces
/usr/bin/ClusterMassTracesByPrecursor
/usr/bin/CometAdapter
/usr/bin/CompNovo
/usr/bin/CompNovoCID
/usr/bin/ConsensusID
/usr/bin/ConsensusMapNormalizer
/usr/bin/CruxAdapter
/usr/bin/DTAExtractor
/usr/bin/DatabaseFilter
/usr/bin/DeMeanderize
/usr/bin/Decharger
/usr/bin/DecoyDatabase
/usr/bin/Digestor
/usr/bin/DigestorMotif
/usr/bin/EICExtractor
/usr/bin/ERPairFinder
/usr/bin/ExecutePipeline
/usr/bin/ExternalCalibration
/usr/bin/FFEval
/usr/bin/FalseDiscoveryRate
/usr/bin/FeatureFinderCentroided
/usr/bin/FeatureFinderIdentification
/usr/bin/FeatureFinderIsotopeWavelet
/usr/bin/FeatureFinderMRM
/usr/bin/FeatureFinderMetabo
/usr/bin/FeatureFinderMultiplex
/usr/bin/FeatureFinderSuperHirn
/usr/bin/FeatureLinkerLabeled
/usr/bin/FeatureLinkerUnlabeled
/usr/bin/FeatureLinkerUnlabeledKD
/usr/bin/FeatureLinkerUnlabeledQT
/usr/bin/FidoAdapter
/usr/bin/FileConverter
/usr/bin/FileFilter
/usr/bin/FileInfo
/usr/bin/FileMerger
/usr/bin/FuzzyDiff
/usr/bin/GenericWrapper
/usr/bin/HighResPrecursorMassCorrector
/usr/bin/IDConflictResolver
/usr/bin/IDDecoyProbability
/usr/bin/IDExtractor
/usr/bin/IDFileConverter
/usr/bin/IDFilter
/usr/bin/IDMapper
/usr/bin/IDMassAccuracy
/usr/bin/IDMerger
/usr/bin/IDPosteriorErrorProbability
/usr/bin/IDRTCalibration
/usr/bin/IDRipper
/usr/bin/IDScoreSwitcher
/usr/bin/IDSplitter
/usr/bin/INIFileEditor
/usr/bin/INIUpdater
/usr/bin/ImageCreator
/usr/bin/InclusionExclusionListCreator
/usr/bin/InspectAdapter
/usr/bin/InternalCalibration
/usr/bin/IsobaricAnalyzer
/usr/bin/LabeledEval
/usr/bin/LowMemPeakPickerHiRes
/usr/bin/LowMemPeakPickerHiResRandomAccess
/usr/bin/LuciphorAdapter
/usr/bin/MRMMapper
/usr/bin/MRMPairFinder
/usr/bin/MRMTransitionGroupPicker
/usr/bin/MSFraggerAdapter
/usr/bin/MSGFPlusAdapter
/usr/bin/MSSimulator
/usr/bin/MSstatsConverter
/usr/bin/MaRaClusterAdapter
/usr/bin/MapAlignerIdentification
/usr/bin/MapAlignerPoseClustering
/usr/bin/MapAlignerSpectrum
/usr/bin/MapNormalizer
/usr/bin/MapRTTransformer
/usr/bin/MapStatistics
/usr/bin/MascotAdapter
/usr/bin/MascotAdapterOnline
/usr/bin/MassCalculator
/usr/bin/MassTraceExtractor
/usr/bin/MetaProSIP
/usr/bin/MetaboliteAdductDecharger
/usr/bin/MetaboliteSpectralMatcher
/usr/bin/MultiplexResolver
/usr/bin/MyriMatchAdapter
/usr/bin/MzMLSplitter
/usr/bin/MzTabExporter
/usr/bin/NoiseFilterGaussian
/usr/bin/NoiseFilterSGolay
/usr/bin/NovorAdapter
/usr/bin/OMSSAAdapter
/usr/bin/OpenMSInfo
/usr/bin/OpenPepXL
/usr/bin/OpenPepXLLF
/usr/bin/OpenSwathAnalyzer
/usr/bin/OpenSwathAssayGenerator
/usr/bin/OpenSwathChromatogramExtractor
/usr/bin/OpenSwathConfidenceScoring
/usr/bin/OpenSwathDIAPreScoring
/usr/bin/OpenSwathDecoyGenerator
/usr/bin/OpenSwathFeatureXMLToTSV
/usr/bin/OpenSwathFileSplitter
/usr/bin/OpenSwathMzMLFileCacher
/usr/bin/OpenSwathRTNormalizer
/usr/bin/OpenSwathRewriteToFeatureXML
/usr/bin/OpenSwathWorkflow
/usr/bin/PSMFeatureExtractor
/usr/bin/PTModel
/usr/bin/PTPredict
/usr/bin/PeakPickerHiRes
/usr/bin/PeakPickerIterative
/usr/bin/PeakPickerWavelet
/usr/bin/PepNovoAdapter
/usr/bin/PeptideIndexer
/usr/bin/PercolatorAdapter
/usr/bin/PhosphoScoring
/usr/bin/PrecursorIonSelector
/usr/bin/PrecursorMassCorrector
/usr/bin/ProteinInference
/usr/bin/ProteinQuantifier
/usr/bin/ProteinResolver
/usr/bin/QCCalculator
/usr/bin/QCEmbedder
/usr/bin/QCExporter
/usr/bin/QCExtractor
/usr/bin/QCImporter
/usr/bin/QCMerger
/usr/bin/QCShrinker
/usr/bin/RNADigestor
/usr/bin/RNPxlSearch
/usr/bin/RNPxlXICFilter
/usr/bin/RTEvaluation
/usr/bin/RTModel
/usr/bin/RTPredict
/usr/bin/Resampler
/usr/bin/SeedListGenerator
/usr/bin/SemanticValidator
/usr/bin/SequenceCoverageCalculator
/usr/bin/SimpleSearchEngine
/usr/bin/SiriusAdapter
/usr/bin/SpecLibCreator
/usr/bin/SpecLibSearcher
/usr/bin/SpectraFilterBernNorm
/usr/bin/SpectraFilterMarkerMower
/usr/bin/SpectraFilterNLargest
/usr/bin/SpectraFilterNormalizer
/usr/bin/SpectraFilterParentPeakMower
/usr/bin/SpectraFilterScaler
/usr/bin/SpectraFilterSqrtMower
/usr/bin/SpectraFilterThresholdMower
/usr/bin/SpectraFilterWindowMower
/usr/bin/SpectraMerger
/usr/bin/SpectraSTSearchAdapter
/usr/bin/SvmTheoreticalSpectrumGeneratorTrainer
/usr/bin/TICCalculator
/usr/bin/TOFCalibration
/usr/bin/TOPPAS
/usr/bin/TOPPView
/usr/bin/TargetedFileConverter
/usr/bin/TextExporter
/usr/bin/TransformationEvaluation
/usr/bin/XFDR
/usr/bin/XMLValidator
/usr/bin/XTandemAdapter
/usr/share/applications/TOPPAS.desktop
/usr/share/applications/TOPPView.desktop
/usr/share/doc/topp/AUTHORS
/usr/share/doc/topp/changelog.Debian.amd64.gz
/usr/share/doc/topp/changelog.Debian.gz
/usr/share/doc/topp/changelog.gz
/usr/share/doc/topp/copyright
/usr/share/lintian/overrides/topp
/usr/share/man/man1/AccurateMassSearch.1.gz
/usr/share/man/man1/AssayGeneratorMetabo.1.gz
/usr/share/man/man1/BaselineFilter.1.gz
/usr/share/man/man1/CVInspector.1.gz
/usr/share/man/man1/ClusterMassTraces.1.gz
/usr/share/man/man1/ClusterMassTracesByPrecursor.1.gz
/usr/share/man/man1/CometAdapter.1.gz
/usr/share/man/man1/CompNovo.1.gz
/usr/share/man/man1/CompNovoCID.1.gz
/usr/share/man/man1/ConsensusID.1.gz
/usr/share/man/man1/ConsensusMapNormalizer.1.gz
/usr/share/man/man1/CruxAdapter.1.gz
/usr/share/man/man1/DTAExtractor.1.gz
/usr/share/man/man1/DatabaseFilter.1.gz
/usr/share/man/man1/DeMeanderize.1.gz
/usr/share/man/man1/Decharger.1.gz
/usr/share/man/man1/DecoyDatabase.1.gz
/usr/share/man/man1/Digestor.1.gz
/usr/share/man/man1/DigestorMotif.1.gz
/usr/share/man/man1/EICExtractor.1.gz
/usr/share/man/man1/ERPairFinder.1.gz
/usr/share/man/man1/ExecutePipeline.1.gz
/usr/share/man/man1/ExternalCalibration.1.gz
/usr/share/man/man1/FFEval.1.gz
/usr/share/man/man1/FalseDiscoveryRate.1.gz
/usr/share/man/man1/FeatureFinderCentroided.1.gz
/usr/share/man/man1/FeatureFinderIdentification.1.gz
/usr/share/man/man1/FeatureFinderIsotopeWavelet.1.gz
/usr/share/man/man1/FeatureFinderMRM.1.gz
/usr/share/man/man1/FeatureFinderMetabo.1.gz
/usr/share/man/man1/FeatureFinderMultiplex.1.gz
/usr/share/man/man1/FeatureFinderSuperHirn.1.gz
/usr/share/man/man1/FeatureLinkerLabeled.1.gz
/usr/share/man/man1/FeatureLinkerUnlabeled.1.gz
/usr/share/man/man1/FeatureLinkerUnlabeledKD.1.gz
/usr/share/man/man1/FeatureLinkerUnlabeledQT.1.gz
/usr/share/man/man1/FidoAdapter.1.gz
/usr/share/man/man1/FileConverter.1.gz
/usr/share/man/man1/FileFilter.1.gz
/usr/share/man/man1/FileInfo.1.gz
/usr/share/man/man1/FileMerger.1.gz
/usr/share/man/man1/FuzzyDiff.1.gz
/usr/share/man/man1/GenericWrapper.1.gz
/usr/share/man/man1/HighResPrecursorMassCorrector.1.gz
/usr/share/man/man1/IDConflictResolver.1.gz
/usr/share/man/man1/IDDecoyProbability.1.gz
/usr/share/man/man1/IDExtractor.1.gz
/usr/share/man/man1/IDFileConverter.1.gz
/usr/share/man/man1/IDFilter.1.gz
/usr/share/man/man1/IDMapper.1.gz
/usr/share/man/man1/IDMassAccuracy.1.gz
/usr/share/man/man1/IDMerger.1.gz
/usr/share/man/man1/IDPosteriorErrorProbability.1.gz
/usr/share/man/man1/IDRTCalibration.1.gz
/usr/share/man/man1/IDRipper.1.gz
/usr/share/man/man1/IDScoreSwitcher.1.gz
/usr/share/man/man1/IDSplitter.1.gz
/usr/share/man/man1/INIFileEditor.1.gz
/usr/share/man/man1/INIUpdater.1.gz
/usr/share/man/man1/ImageCreator.1.gz
/usr/share/man/man1/InclusionExclusionListCreator.1.gz
/usr/share/man/man1/InspectAdapter.1.gz
/usr/share/man/man1/InternalCalibration.1.gz
/usr/share/man/man1/IsobaricAnalyzer.1.gz
/usr/share/man/man1/LabeledEval.1.gz
/usr/share/man/man1/LowMemPeakPickerHiRes.1.gz
/usr/share/man/man1/LowMemPeakPickerHiResRandomAccess.1.gz
/usr/share/man/man1/LuciphorAdapter.1.gz
/usr/share/man/man1/MRMMapper.1.gz
/usr/share/man/man1/MRMPairFinder.1.gz
/usr/share/man/man1/MRMTransitionGroupPicker.1.gz
/usr/share/man/man1/MSFraggerAdapter.1.gz
/usr/share/man/man1/MSGFPlusAdapter.1.gz
/usr/share/man/man1/MSSimulator.1.gz
/usr/share/man/man1/MSstatsConverter.1.gz
/usr/share/man/man1/MaRaClusterAdapter.1.gz
/usr/share/man/man1/MapAlignerIdentification.1.gz
/usr/share/man/man1/MapAlignerPoseClustering.1.gz
/usr/share/man/man1/MapAlignerSpectrum.1.gz
/usr/share/man/man1/MapNormalizer.1.gz
/usr/share/man/man1/MapRTTransformer.1.gz
/usr/share/man/man1/MapStatistics.1.gz
/usr/share/man/man1/MascotAdapter.1.gz
/usr/share/man/man1/MascotAdapterOnline.1.gz
/usr/share/man/man1/MassCalculator.1.gz
/usr/share/man/man1/MassTraceExtractor.1.gz
/usr/share/man/man1/MetaProSIP.1.gz
/usr/share/man/man1/MetaboliteAdductDecharger.1.gz
/usr/share/man/man1/MetaboliteSpectralMatcher.1.gz
/usr/share/man/man1/MultiplexResolver.1.gz
/usr/share/man/man1/MyriMatchAdapter.1.gz
/usr/share/man/man1/MzMLSplitter.1.gz
/usr/share/man/man1/MzTabExporter.1.gz
/usr/share/man/man1/NoiseFilterGaussian.1.gz
/usr/share/man/man1/NoiseFilterSGolay.1.gz
/usr/share/man/man1/NovorAdapter.1.gz
/usr/share/man/man1/OMSSAAdapter.1.gz
/usr/share/man/man1/OpenMSInfo.1.gz
/usr/share/man/man1/OpenPepXL.1.gz
/usr/share/man/man1/OpenPepXLLF.1.gz
/usr/share/man/man1/OpenSwathAnalyzer.1.gz
/usr/share/man/man1/OpenSwathAssayGenerator.1.gz
/usr/share/man/man1/OpenSwathChromatogramExtractor.1.gz
/usr/share/man/man1/OpenSwathConfidenceScoring.1.gz
/usr/share/man/man1/OpenSwathDIAPreScoring.1.gz
/usr/share/man/man1/OpenSwathDecoyGenerator.1.gz
/usr/share/man/man1/OpenSwathFeatureXMLToTSV.1.gz
/usr/share/man/man1/OpenSwathFileSplitter.1.gz
/usr/share/man/man1/OpenSwathMzMLFileCacher.1.gz
/usr/share/man/man1/OpenSwathRTNormalizer.1.gz
/usr/share/man/man1/OpenSwathRewriteToFeatureXML.1.gz
/usr/share/man/man1/OpenSwathWorkflow.1.gz
/usr/share/man/man1/PSMFeatureExtractor.1.gz
/usr/share/man/man1/PTModel.1.gz
/usr/share/man/man1/PTPredict.1.gz
/usr/share/man/man1/PeakPickerHiRes.1.gz
/usr/share/man/man1/PeakPickerIterative.1.gz
/usr/share/man/man1/PeakPickerWavelet.1.gz
/usr/share/man/man1/PepNovoAdapter.1.gz
/usr/share/man/man1/PeptideIndexer.1.gz
/usr/share/man/man1/PercolatorAdapter.1.gz
/usr/share/man/man1/PhosphoScoring.1.gz
/usr/share/man/man1/PrecursorIonSelector.1.gz
/usr/share/man/man1/PrecursorMassCorrector.1.gz
/usr/share/man/man1/ProteinInference.1.gz
/usr/share/man/man1/ProteinQuantifier.1.gz
/usr/share/man/man1/ProteinResolver.1.gz
/usr/share/man/man1/QCCalculator.1.gz
/usr/share/man/man1/QCEmbedder.1.gz
/usr/share/man/man1/QCExporter.1.gz
/usr/share/man/man1/QCExtractor.1.gz
/usr/share/man/man1/QCImporter.1.gz
/usr/share/man/man1/QCMerger.1.gz
/usr/share/man/man1/QCShrinker.1.gz
/usr/share/man/man1/RNADigestor.1.gz
/usr/share/man/man1/RNPxlSearch.1.gz
/usr/share/man/man1/RNPxlXICFilter.1.gz
/usr/share/man/man1/RTEvaluation.1.gz
/usr/share/man/man1/RTModel.1.gz
/usr/share/man/man1/RTPredict.1.gz
/usr/share/man/man1/Resampler.1.gz
/usr/share/man/man1/SeedListGenerator.1.gz
/usr/share/man/man1/SemanticValidator.1.gz
/usr/share/man/man1/SequenceCoverageCalculator.1.gz
/usr/share/man/man1/SimpleSearchEngine.1.gz
/usr/share/man/man1/SiriusAdapter.1.gz
/usr/share/man/man1/SpecLibCreator.1.gz
/usr/share/man/man1/SpecLibSearcher.1.gz
/usr/share/man/man1/SpectraFilterBernNorm.1.gz
/usr/share/man/man1/SpectraFilterMarkerMower.1.gz
/usr/share/man/man1/SpectraFilterNLargest.1.gz
/usr/share/man/man1/SpectraFilterNormalizer.1.gz
/usr/share/man/man1/SpectraFilterParentPeakMower.1.gz
/usr/share/man/man1/SpectraFilterScaler.1.gz
/usr/share/man/man1/SpectraFilterSqrtMower.1.gz
/usr/share/man/man1/SpectraFilterThresholdMower.1.gz
/usr/share/man/man1/SpectraFilterWindowMower.1.gz
/usr/share/man/man1/SpectraMerger.1.gz
/usr/share/man/man1/SpectraSTSearchAdapter.1.gz
/usr/share/man/man1/SvmTheoreticalSpectrumGeneratorTrainer.1.gz
/usr/share/man/man1/TICCalculator.1.gz
/usr/share/man/man1/TOFCalibration.1.gz
/usr/share/man/man1/TOPPAS.1.gz
/usr/share/man/man1/TOPPView.1.gz
/usr/share/man/man1/TargetedFileConverter.1.gz
/usr/share/man/man1/TextExporter.1.gz
/usr/share/man/man1/TransformationEvaluation.1.gz
/usr/share/man/man1/XFDR.1.gz
/usr/share/man/man1/XMLValidator.1.gz
/usr/share/man/man1/XTandemAdapter.1.gz
/usr/share/man/man1/topp.1.gz
/usr/share/pixmaps/TOPPAS.xpm
/usr/share/pixmaps/TOPPView.xpm

Changelog

2018-11-17 - Filippo Rusconi <lopippo@debian.org>
openms (2.4.0-real-1) unstable; urgency=low
* Really released 2.4.0 version with Qt5 port merged;
* d/control: update website url to http://www.openms.de (thanks to Adrian Bunk
<bunk@debian.org>; Closes: #906561);
* d/copyright: update website url and copyright years.
add Design Science License (Thanks to Dmitry Smirnov
<onlyjob@debian.org>, Closes: #822412);
* d/control: fix libqt5opengl5-dev (>= 5.7.0) to libqt5opengl5-desktop-dev
(>= 5.7.0) because upstream won't support OpenGL ES anytime soon (thanks
to Adrian Bunk <bunk@debian.org>, Closes: #906666);
* Use secure copyright file specification URI.
* Trim trailing whitespace.
Jelmer Vernooń≥ <jelmer@debian.org>  Mon, 15 Oct 2018 06:59:37 +0000
* debian/control: Change "Conflicts:" to "Breaks:" (Closes:
#816562);
2018-08-16 - Filippo Rusconi <lopippo@debian.org>
openms (2.4.0-1) unstable; urgency=low
* New upstream version (release branch with Qt5 port merged).
2018-04-19 - Filippo Rusconi <lopippo@debian.org>
openms (2.3-20180419-git-a0b7f650-1) experimental; urgency=low
* New upstream version (development branch with Qt5 port merged).
2017-09-06 - Filippo Rusconi <lopippo@debian.org>
openms (20170907-1) UNRELEASED; urgency=medium
* New upstream version ported to Qt5.
2016-03-30 - Filippo Rusconi <lopippo@debian.org>
openms (2.0.0-4) unstable; urgency=medium
* debian/control: Change "Conflicts:" to "Breaks:" (Closes:
#816562);
* debian/rules: fix the OPENMS_DATA_PATH value so that it points to
/us/share/openms-common and not /usr/share/openms-common/OpenMS.
* debian/rules: Put dh_clean at the end of the clean target.
* switched doc_minimal doc_class_only targets around in the make call
because the doxygen-based documentation for the classes did not get
generated fully.
* Remove the git protocol URL for the repos and switch to secure http for
the other URL.
* debian/control: Standards-Version: 3.9.7. No changes required.
* debian/rules: Reinstate DEB_BUILD_MAINT_OPTIONS along with the hardening
flag +all..
* debian/rules: Make sure libSuperHirn and libOpenMS_GUI libraries are
processed fine with respect to the symbols control file.
2016-01-18 - Filippo Rusconi <lopippo@debian.org>
openms (2.0.0-3) unstable; urgency=medium
* Ship the dynamically generated cmake files to the -dev package.
* Improve the build system patch to state that we prefer libboost shared
objects.
* debian/rules: Packaging (debian/*.install files) now uses the material
that has been installed with make install DESTDIR=debian/build after
cmake call with -DCMAKE_INSTALL_PREFIX=/usr.
2016-01-14 - Filippo Rusconi <lopippo@debian.org>
openms (2.0.0-2) unstable; urgency=medium
* Ship the code examples to the openms-doc package. These examples are
partially described in the documentation (html format) but having the
whole code files is more interesting.
* d/control: add "Replaces: libopenms-1.11" to fix upgrade problem
(Closes: #810356), thanks to Andreas Beckmann <anbe@debian.org> for
the report.
* Bump-up debian/compat to 9.
* debian/watch: use sf redirector.
2015-08-17 - Filippo Rusconi <lopippo@debian.org>
openms (2.0.0-1) unstable; urgency=medium
* New upstream version (Closes: #790624 ; Closes: #804496).
2014-08-18 - Filippo Rusconi <lopippo@debian.org>
openms (1.11.1-5) unstable; urgency=medium
* mv upstream upstream/metadata

See Also

Package Description
toppler_1.1.6-3+b1_amd64.deb clone of the "Nebulus" game on old 8 and 16 bit machines
toppred_1.10-7_amd64.deb transmembrane topology prediction
tor-arm_2.1.0-2_all.deb transitional package
tor-geoipdb_0.4.1.6-1_all.deb GeoIP database for Tor
tor_0.4.1.6-1_amd64.deb anonymizing overlay network for TCP
torcs-data_1.3.7+dfsg-4_all.deb data files for TORCS
torcs_1.3.7+dfsg-4_amd64.deb 3D racing cars simulator game using OpenGL
torrus-common_3.00-1_all.deb Universal front-end for Round-Robin Databases (common files)
torsocks_2.3.0-2+b1_amd64.deb use SOCKS-friendly applications with Tor
torus-trooper-data_0.22.dfsg1-12_all.deb speeding ship sailing through barrage - game data
torus-trooper_0.22.dfsg1-12_amd64.deb speeding ship sailing through barrage
totalopenstation_0.3.3-3_all.deb download and process data from total station devices
totem-common_3.34.1-2_all.deb Data files for the Totem media player
totem-plugins_3.34.1-2_amd64.deb Plugins for the Totem media player
totem_3.34.1-2_amd64.deb Simple media player for the GNOME desktop based on GStreamer
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