sim4db_0~20150903+r2013-6+b1_amd64.deb


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Description

sim4db - batch spliced alignment of cDNA sequences to a target genome

Property Value
Distribution Debian Sid
Repository Debian Main amd64
Package filename sim4db_0~20150903+r2013-6+b1_amd64.deb
Package name sim4db
Package version 0~20150903+r2013
Package release 6+b1
Package architecture amd64
Package type deb
Category science
Homepage http://kmer.sourceforge.net
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 424.73 KB
Installed size 3.23 MB

Alternatives

Package Version Architecture Repository
sim4db_0~20150903+r2013-6_i386.deb 0~20150903+r2013 i386 Debian Main
sim4db - - -

Requires

Name Value
libc6 >= 2.14
libgcc1 >= 1:3.0
libstdc++6 >= 5.2

Download

Type URL
Mirror ftp.br.debian.org
Binary Package sim4db_0~20150903+r2013-6+b1_amd64.deb
Source Package kmer

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install sim4db deb package:
    # sudo apt-get install sim4db

Files

Path
/usr/bin/cleanPolishes
/usr/bin/comparePolishes
/usr/bin/convertPolishes
/usr/bin/convertToAtac
/usr/bin/convertToExtent
/usr/bin/depthOfPolishes
/usr/bin/detectChimera
/usr/bin/filterPolishes
/usr/bin/fixPolishesIID
/usr/bin/headPolishes
/usr/bin/mappedCoverage
/usr/bin/mergePolishes
/usr/bin/parseSNP
/usr/bin/pickBestPolish
/usr/bin/pickUniquePolish
/usr/bin/plotCoverageVsIdentity
/usr/bin/realignPolishes
/usr/bin/removeDuplicate
/usr/bin/reportAlignmentDifferences
/usr/bin/sim4db
/usr/bin/sortPolishes
/usr/bin/summarizePolishes
/usr/bin/uniqPolishes
/usr/bin/vennPolishes
/usr/share/doc/sim4db/README.sim4db.gz
/usr/share/doc/sim4db/README.test
/usr/share/doc/sim4db/changelog.Debian.amd64.gz
/usr/share/doc/sim4db/changelog.Debian.gz
/usr/share/doc/sim4db/copyright
/usr/share/doc/sim4db/sim4db-unit-test
/usr/share/man/man1/cleanPolishes.1.gz
/usr/share/man/man1/comparePolishes.1.gz
/usr/share/man/man1/convertPolishes.1.gz
/usr/share/man/man1/convertToAtac.1.gz
/usr/share/man/man1/convertToExtent.1.gz
/usr/share/man/man1/depthOfPolishes.1.gz
/usr/share/man/man1/detectChimera.1.gz
/usr/share/man/man1/filterPolishes.1.gz
/usr/share/man/man1/fixPolishesIID.1.gz
/usr/share/man/man1/headPolishes.1.gz
/usr/share/man/man1/mappedCoverage.1.gz
/usr/share/man/man1/mergePolishes.1.gz
/usr/share/man/man1/parseSNP.1.gz
/usr/share/man/man1/pickBestPolish.1.gz
/usr/share/man/man1/pickUniquePolish.1.gz
/usr/share/man/man1/plotCoverageVsIdentity.1.gz
/usr/share/man/man1/realignPolishes.1.gz
/usr/share/man/man1/removeDuplicate.1.gz
/usr/share/man/man1/reportAlignmentDifferences.1.gz
/usr/share/man/man1/sim4db.1.gz
/usr/share/man/man1/sim4dbutils.1.gz
/usr/share/man/man1/sortPolishes.1.gz
/usr/share/man/man1/summarizePolishes.1.gz
/usr/share/man/man1/uniqPolishes.1.gz
/usr/share/man/man1/vennPolishes.1.gz

Changelog

2018-08-27 - Liubov Chuprikova <chuprikovalv@gmail.com>
kmer (0~20150903+r2013-6) unstable; urgency=medium
* Team upload.
[ Liubov Chuprikova ]
* Add autopkgtest.
* Standards-Version: 4.2.1
* Add a patch to fix wrong evaluation order in an expression
Closes: #906980
[ Andreas Tille ]
* Provide test data in new package kmer-examples to avoid duplication of
data in two packages
2018-08-26 - Andreas Tille <tille@debian.org>
kmer (0~20150903+r2013-5) unstable; urgency=medium
* Team upload
[ Adrian Bunk ]
* Use the same compile flags in all Linux builds, and include -fPIC
atac .so were built without -fPIC on !amd64/ia64.
Closes: #907007
[ Andreas Tille ]
* Standards-Version: 4.2.0
2018-08-05 - Andreas Tille <tille@debian.org>
kmer (0~20150903+r2013-4) unstable; urgency=medium
* Team upload.
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
* Fix Perl interpreter path
* Fix spelling
2016-12-03 - Afif Elghraoui <afif@debian.org>
kmer (0~20150903+r2013-3) unstable; urgency=medium
* Rename source package to match upstream name and primary binary package
* New binary package: atac
* Drop unused packaging file for libkmer
* libkmer-dev, libmeryl-dev:
- reorganize header files and static libraries
* Remove obsolete README.Debian
* kmer: don't use Metapackages section
2016-11-28 - Afif Elghraoui <afif@debian.org>
kmer-tools (0~20150903+r2013-2) unstable; urgency=low
[ Afif Elghraoui ]
* Fix source URL in debian/copyright.
[ Andreas Tille ]
* Provide fake watch file to keep QA tools silent about no watch information
* debhelper 10
* cme fix dpkg-control
* hardening=+all
2016-01-02 - Afif Elghraoui <afif@ghraoui.name>
kmer-tools (0~20150903+r2013-1) unstable; urgency=low
* Simplify get-orig-source script
* Imported Upstream version 0~20150903+r2013
* Clean up source package: move meryl manpages to a subdirectory of debian/
* New binary packages:
- leaff
- sim4db
* Drop build-dependency on libbz2-dev
* Drop kazlib quilt patches
* Fix section/architecture of the kmer metapackage
* Set Vcs-Browser to point to cgit
* Don't install other READMEs to metapackage docs
* Update d/copyright
* Update README.source
- document situation with bundled kazlib
- document reason for monolithic source package
* Make the build system more flexible to hopefully fix build on kFreeBSD
* Add README.Debian to let users know some components aren't yet packaged
* Add comment for why we can't use dh --parallel
2015-05-01 - Afif Elghraoui <afif@ghraoui.name>
kmer-tools (0~20150520+2004-1) unstable; urgency=low
* Initial release (Closes: #784863)

See Also

Package Description
simavr_1.6+dfsg-3_amd64.deb lean and mean AVR simulator
simba_0.8.4-6_all.deb next generation mirroring tool
simbody-doc_3.6.1+dfsg-7_all.deb SimTK multibody dynamics API - Documentation
simg2img_8.1.0+r23-5_all.deb Transitional package
simgrid-java_3.23+dfsg2-3_amd64.deb Java bindings for the SimGrid Toolkit
simh_3.8.1-6+b1_amd64.deb Emulators for 33 different computers
simhash_0.0.20161225-1_amd64.deb generate similarity hashes to find nearly duplicate files
similarity-tester_3.0.2-1+b1_amd64.deb Find lexical similarities between files
simple-ccsm_0.8.16-3_all.deb Simple Compizconfig settings manager
simple-cdd_0.6.7_all.deb create customized debian-installer CDs
simple-image-reducer_1.0.2+git20191008-1_all.deb GTK application to easily reduce and rotate images
simple-obfs_0.0.5-6_amd64.deb simple obfusacting plugin for shadowsocks-libev
simple-revision-control_1.26-2_all.deb single-file and single-user revision control system
simple-scan_3.34.1-1_amd64.deb Simple Scanning Utility
simple-tpm-pk11_0.06-1+b1_amd64.deb simple library for using the TPM chip to secure SSH keys
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