nast-ier_20101212+dfsg1-2_amd64.deb


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Description

nast-ier - NAST-based DNA alignment tool

Property Value
Distribution Debian Sid
Repository Debian Main amd64
Package filename nast-ier_20101212+dfsg1-2_amd64.deb
Package name nast-ier
Package version 20101212+dfsg1
Package release 2
Package architecture amd64
Package type deb
Category science
Homepage http://microbiomeutil.sourceforge.net/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 20.36 KB
Installed size 100.00 KB

Alternatives

Package Version Architecture Repository
nast-ier_20101212+dfsg1-2_i386.deb 20101212+dfsg1 i386 Debian Main
nast-ier - - -

Requires

Name Value
cdbfasta -
libc6 >= 2.4
microbiomeutil-data -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package nast-ier_20101212+dfsg1-2_amd64.deb
Source Package microbiomeutil

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install nast-ier deb package:
    # sudo apt-get install nast-ier

Files

Path
/usr/bin/nast-ier
/usr/lib/NAST-iEr/NAST-iEr
/usr/lib/NAST-iEr/README
/usr/lib/NAST-iEr/run_NAST-iEr.pl
/usr/lib/NAST-iEr/PerlLib/CdbTools.pm
/usr/lib/NAST-iEr/PerlLib/Fasta_reader.pm
/usr/lib/NAST-iEr/PerlLib/Nuc_translator.pm
/usr/lib/NAST-iEr/iterative_refinement/compare_DBs.pl
/usr/lib/NAST-iEr/iterative_refinement/iteratively_realign_db_selfsearch.pl
/usr/lib/NAST-iEr/iterative_refinement/quant_differences.pl
/usr/lib/NAST-iEr/util/apply_NAST_MASK.pl
/usr/lib/NAST-iEr/util/mfasta_remove_allGapCols.pl
/usr/lib/NAST-iEr/util/mfasta_remove_gaps.pl
/usr/lib/NAST-iEr/util/show_malign_no_gap.pl
/usr/lib/NAST-iEr/util/show_malign_no_gap_no_identical_cols.pl
/usr/lib/NAST-iEr/util/masks/eco.prokMSA
/usr/lib/NAST-iEr/util/masks/lanemask.NAST
/usr/share/doc/nast-ier/README
/usr/share/doc/nast-ier/changelog.Debian.gz
/usr/share/doc/nast-ier/copyright
/usr/share/doc/nast-ier/examples
/usr/share/man/man1/nast-ier.1.gz

Changelog

2018-07-05 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212+dfsg1-2) unstable; urgency=low
[ Steffen Moeller ]
* debian/upstream/metadata:
- Added references to registries
- yamllint cleanliness
[ Andreas Tille ]
* Remove unneeded get-orig-source target
* Remove Tim Booth from Uploaders (thanks for your work, Tim)
* Secure URI in watch file
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
* hardening=+all
2016-01-20 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212+dfsg1-1) unstable; urgency=low
* debian/copyright: s/BSD-like/BSD-3-clause/
* Moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
* Cleanup d/rules
* Fix build time tests and run these
* Add doc-base file
* d/watch: add missing repacksuffix
* Moved packaging from SVN to Git
* Cleaning up log files from past test runs
* Add autopkgtest
2013-07-22 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212+dfsg-1) unstable; urgency=low
* Initial release to Debian (Closes: #711086)
* Remove copyrighted logo images from upstream tarball (the logo is
only used in very short doc which works perfectly without this image)
* debian/control: Use anonscm Vcs addresses
2013-06-05 - Tim Booth <tbooth@ceh.ac.uk>
microbiomeutil (20101212-1ubuntu8) precise; urgency=low
* Bio-Linux rebuild with Andreas' fixes  
* ChimeraSlayer run from QIIME was not working.  Need to pre-compute
index files and add them to RESOURCES directory
* Also added missing direct dep on blast2
2013-06-04 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212-2) unstable; urgency=low
* debian/copyright: DEP5 copyright
* debian/control:
- Added myself to uploaders
- Priority: optional (as per Debian Med policy)
- Droped DM-Upload-Allowed
- Standards-Version: 3.9.4
- Debhelper 9 (also d/compat)
- Dropped explicit quilt Build-Dependends
- better formatting
- Enhance long descriptions
* debian/rules:
- remove "--with quilt" because this is specified in source format
- Use xz compression for binaries
* debian/rules, debian/*.install, debian/*.links:
Rather use the usual debhelper input files
* Remove unneeded debian/README.* files and create debian/upstream
file with citation information
* Removed debian/{ChimeraSlayer,microbiomeutil.install} because
unneeded
* debian/*.1: Wrote manpages
* debian/microbiomeutil.links: Synonyms with camel case spelling
as in the provided documentation
* debian/patches/hardening.patch: Enable propagation of hardening options
2013-06-03 - Tim Booth <tbooth@ceh.ac.uk>
microbiomeutil (20101212-1ubuntu6) lucid; urgency=low
* Another patch needed to Perl code due to inappropriate use of
FindBin 
* Move to /usr/lib rather than /usr/share as per Lintian warnings.
* Set --with quilt on dh.  (Possibly not needed now?)
* Added better descriptions in debian/control
2011-04-11 - Tim Booth <tbooth@ceh.ac.uk>
microbiomeutil (20101212-1ubuntu1) lucid; urgency=low
* Split package into 4 binary packages.
2011-03-30 - Steffen Moeller <moeller@debian.org>
microbiomeutil (2010-11-1) UNRELEASED; urgency=low
* New upstream
2010-12-02 - Steffen Moeller <moeller@debian.org>
microbiomeutil (2010-11-02-1) UNRELEASED; urgency=low
* Initial packaging

See Also

Package Description
nast_0.2.0-7+b1_amd64.deb packet sniffer and lan analyzer
nasty_0.6-3_amd64.deb tool which helps you to recover your GPG passphrase
nat-rtsp-dkms_0.7+4.18-0.1_all.deb Connection tracking and NAT support for RTSP
nat-traverse_0.7-1_all.deb NAT gateway traversal utility
natbraille-doc_2.0rc3-8_all.deb Documentation for natbraille
natbraille_2.0rc3-8_all.deb French braille typesetting program
natlog_2.01.01-1_amd64.deb Source-natting firewall logging utility
natpmp-utils_20150609-7_all.deb transitional package
natpmpc_20150609-7_amd64.deb portable and fully compliant implementation of NAT-PMP (client)
naturaldocs_1.51-3_all.deb extensible, multi-language documentation generator
nautic_1.5-4_amd64.deb computation of observer position in astro-navigation
nautilus-actions_3.4-2_amd64.deb transitional package for FileManager-Actions
nautilus-admin_1.1.9-2_all.deb Extension for Nautilus to do administrative operations
nautilus-compare_0.0.4+po1-1_all.deb Context menu comparison extension for Nautilus file manager
nautilus-data_3.30.5-1_all.deb data files for nautilus
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