mira-assembler_4.9.6-4+b1_amd64.deb


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Description

mira-assembler - Whole Genome Shotgun and EST Sequence Assembler

Property Value
Distribution Debian Sid
Repository Debian Main amd64
Package filename mira-assembler_4.9.6-4+b1_amd64.deb
Package name mira-assembler
Package version 4.9.6
Package release 4+b1
Package architecture amd64
Package type deb
Category role::program science
Homepage http://chevreux.org/projects_mira.html
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 2.18 MB
Installed size 6.87 MB

Alternatives

Package Version Architecture Repository
mira-assembler_4.9.6-4+b1_i386.deb 4.9.6 i386 Debian Main
mira-assembler - - -

Requires

Name Value
libboost-filesystem1.67.0 -
libboost-iostreams1.67.0 -
libboost-regex1.67.0 >= 1.67.0-10
libboost-system1.67.0 -
libboost-thread1.67.0 -
libbz2-1.0 -
libc6 >= 2.27
libexpat1 >= 2.0.1
libgcc1 >= 1:3.0
libgomp1 >= 4.9
libstdc++6 >= 5.2
zlib1g >= 1:1.2.6

Download

Type URL
Mirror ftp.br.debian.org
Binary Package mira-assembler_4.9.6-4+b1_amd64.deb
Source Package mira

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mira-assembler deb package:
    # sudo apt-get install mira-assembler

Files

Path
/usr/bin/mira
/usr/bin/mirabait
/usr/bin/miraconvert
/usr/bin/miramem
/usr/bin/miramer
/usr/share/doc/mira-assembler/HELP_WANTED
/usr/share/doc/mira-assembler/NEWS.gz
/usr/share/doc/mira-assembler/README
/usr/share/doc/mira-assembler/README.test
/usr/share/doc/mira-assembler/THANKS
/usr/share/doc/mira-assembler/changelog.Debian.amd64.gz
/usr/share/doc/mira-assembler/changelog.Debian.gz
/usr/share/doc/mira-assembler/changelog.gz
/usr/share/doc/mira-assembler/copyright
/usr/share/doc/mira-assembler/est_assembly.conf
/usr/share/doc/mira-assembler/run-unit-test
/usr/share/doc/mira-assembler/solexa1.conf
/usr/share/doc/mira-assembler/solexa2.conf
/usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta.gz
/usr/share/doc/mira-assembler/test_data/fasta_estset1/tvc_mini.fasta.qual.gz
/usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_backbone_in.gbf.gz
/usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta.gz
/usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_in.solexa.fasta.qual.gz
/usr/share/doc/mira-assembler/test_data/solexa_eco_art/ecoli_straindata_in.txt.gz
/usr/share/lintian/overrides/mira-assembler
/usr/share/man/man1/mira.1.gz
/usr/share/man/man1/mirabait.1.gz
/usr/share/man/man1/miraconvert.1.gz
/usr/share/man/man1/miradiff.1.gz
/usr/share/man/man1/miramem.1.gz
/usr/share/man/man1/miramer.1.gz
/usr/share/mira/support_3rdparty_tools/GTAGDB
/usr/share/mira/support_3rdparty_tools/README
/usr/share/mira/support_3rdparty_tools/consedrc.13.0
/usr/share/mira/support_3rdparty_tools/consedtaglib.txt

Changelog

2018-09-19 - Andreas Tille <tille@debian.org>
mira (4.9.6-4) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata: Added references to
OMICtools and bio.tools
[ Andreas Tille ]
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* No extra manpages from Debian
2017-06-12 - Nadiya Sitdykova <rovenskasa@gmail.com>
mira (4.9.6-3) unstable; urgency=medium
* Team upload.
[ Nadiya Sitdykova ]
* Add autopkgtest test-suite for denovo, mapping and est assembly
2016-12-03 - Andreas Tille <tille@debian.org>
mira (4.9.6-2) unstable; urgency=medium
* debhelper 10
* d/watch: version=4
* Build-Depends: libfl-dev
Closes: #846442
* Remove unused lintian override
2016-05-04 - Michael R. Crusoe <michael.crusoe@gmail.com>
mira (4.9.6-1) unstable; urgency=medium
* New upstream release.
* dropped all patches except for one spelling fix, as they were incorporated
upstream
* dropped the -examples package for now, as the minidemo is missing from
upstream in this release.
* our manpages have been adopted and adapted upstream, so they have been
removed
* added architecture independent package for rfam 12s rRNA database
* enable building docs & rfam packages separately
* Standards-Version bump to 3.9.8
* Updated package descriptions to remove tools that upstream no longer
provides
* minidemo is missing from 4.9.6, commented out -examples package for now
* cleaned out unnecessary stanzas from debian/rules
2016-04-25 - Andreas Tille <tille@debian.org>
mira (4.9.5-6) unstable; urgency=medium
* Fix build issue with gcc-6
Closes: #822474
2016-02-03 - Michael R. Crusoe <crusoe@ucdavis.edu>
mira (4.9.5-5) unstable; urgency=medium
* Make build reproducible; fix FTBFS on non-'C' locales
2016-02-02 - Michael R. Crusoe <crusoe@ucdavis.edu>
mira (4.9.5-4) unstable; urgency=medium
* Packaging moved from SVN to Git
* Loosen boost dependencies.
2016-01-27 - Andreas Tille <tille@debian.org>
mira (4.9.5-3) unstable; urgency=medium
* Remove *.cc files that are created by old flex version which breaks
build otherwise
Closes: #812681
2015-12-04 - Andreas Tille <tille@debian.org>
mira (4.9.5-2) unstable; urgency=medium
* Verify that package builds without problems with gcc-5
Closes: #793261
* override false lintian positives
* Fix spelling
* wrote missing manpage and moved manpages to separate dir
2015-07-01 - Andreas Tille <tille@debian.org>
mira (4.9.5-1) unstable; urgency=medium
* New upstream version
* Moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control

See Also

Package Description
mira-doc_4.9.6-4_all.deb documentation for the mira assembler
mira-rfam-12s-rrna_4.9.6-4_all.deb extract of RFAM 12 rRNA database
mirage_0.9.5.2-1_amd64.deb fast and simple GTK+ image viewer
miredo-server_1.2.6-7_amd64.deb Teredo IPv6 tunneling server
miredo_1.2.6-7_amd64.deb Teredo IPv6 tunneling through NATs
miri-sdr_0.0.4.59ba37-5+b1_amd64.deb Software defined radio support for Mirics hardware (tools)
mirmon_2.11-5_all.deb monitor the state of mirrors
mirrormagic-data_3.0.0+dfsg2-1_all.deb Data files for mirrormagic
mirrormagic_3.0.0+dfsg2-1_amd64.deb Shoot around obstacles to collect energy using your beam
mirtop_0.3.17-1_all.deb annotate miRNAs with a standard mirna/isomir naming
miscfiles_1.5+dfsg-2_all.deb Dictionaries and other interesting files
misery_0.2-1.1+b2_amd64.deb Simple accounting package for groups, clubs, holidays
missfits_2.8.0-2_amd64.deb Basic maintenance and packaging tasks on FITS files
missidentify_1.0-9_amd64.deb find win32 applications
mistral-api_7.0.0-2_all.deb OpenStack Workflow service - API
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