metastudent_2.0.1-6_all.deb


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Description

metastudent - predictor of Gene Ontology terms from protein sequence

Property Value
Distribution Debian Sid
Repository Debian Main amd64
Package filename metastudent_2.0.1-6_all.deb
Package name metastudent
Package version 2.0.1
Package release 6
Package architecture all
Package type deb
Category science
Homepage https://rostlab.org/owiki/index.php/Metastudent
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 5.72 MB
Installed size 92.73 MB

Alternatives

Package Version Architecture Repository
metastudent_2.0.1-6_all.deb 2.0.1 all Debian Main
metastudent - - -

Requires

Name Value
blast2 -
default-jre -
libfile-chdir-perl -
libgo-perl >= 0.15-3
libgraphviz-perl -
libipc-run-perl -
metastudent-data >= 2.0.0
perl:any -
python -
python:any >= 2.7~
python:any << 2.8

Download

Type URL
Mirror ftp.br.debian.org
Binary Package metastudent_2.0.1-6_all.deb
Source Package metastudent

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install metastudent deb package:
    # sudo apt-get install metastudent

Files

Path
/etc/metastudentrc
/usr/bin/metastudent
/usr/lib/python2.7/dist-packages/metastudent-2.0.1.egg-info
/usr/lib/python2.7/dist-packages/metastudentPkg/BlastWrapper.py
/usr/lib/python2.7/dist-packages/metastudentPkg/Logger.py
/usr/lib/python2.7/dist-packages/metastudentPkg/__init__.py
/usr/lib/python2.7/dist-packages/metastudentPkg/commons.py
/usr/lib/python2.7/dist-packages/metastudentPkg/generateTermNameMapping.py
/usr/lib/python2.7/dist-packages/metastudentPkg/runMethods.py
/usr/lib/python2.7/dist-packages/metastudentPkg/version.py
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/report.txt
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/DataPreprocessing/splitDB.py
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/GOSSIP/.classpath
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/GOSSIP/.project
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/GOSSIP/temp.fasta
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/GO_Parser/GO_Parents.2014.txt
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/GO_Parser/GO_Parents.txt
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/GO_Parser/src/.classpath
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/GO_Parser/src/.project
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/Validation/GO_Table.txt
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/Validation/SIMPLECOUNT_0.8.val
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/Validation/SIMPLECOUNT_0.9.val
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/parser/group2_blastParser.py
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/parser/group2_goParserSwissprot.py
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/parser/group2_goStatistics.py
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/parser/group4_blastParser.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupA/parser/group4_swissProtParser.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/data/besthit.dist
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/data/goterm2014.txt
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/data/goterm2term.txt
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/data/transitiveClosure2014.txt
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/data/unweighted.dist
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/data/weighted.dist
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/java/bla.tabularresults
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/java/META-INF/MANIFEST.MF
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/GOaddpath.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/GOeval.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/GOfunctions.pm
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/GOmultifiles.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/addGO2BLAST.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/build_splitsets.rb
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/cafa_format_checker_2.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/call_build_splitsets.readme
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/evaluate.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/filter_fasta.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/go_filter_cc.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/make_percent.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/make_splits.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/parse_GO_hierarchy.xslt
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/parse_GO_terms.xslt
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/parse_blast.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/readme.txt
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/splitall.sh
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/splitall_clusters.sh
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/swissprot_extract_go.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/perl/test2eval.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/pp2/.classpath
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/pp2/.project
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/pp2/tools/cafa_format_checker_2.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/run/knn_weighted
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupB/run/run_knn_weighted
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupC/CafaWrapper1.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupC/CafaWrapper2.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupC/CafaWrapper3.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupC/CafaWrapper3_new.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupC/Report.doc
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupC/Report.pdf
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupC/exercise3.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupC/transitiveClosure2014.txt
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupC/treehandler.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupC/treehandler_new.pl
/usr/lib/python2.7/dist-packages/metastudentPkg/lib/groupC/validate.pl
/usr/share/doc/metastudent/README.Debian
/usr/share/doc/metastudent/README.test
/usr/share/doc/metastudent/changelog.Debian.gz
/usr/share/doc/metastudent/changelog.gz
/usr/share/doc/metastudent/copyright
/usr/share/doc/metastudent/installation-test
/usr/share/doc/metastudent/examples/test.fasta
/usr/share/doc/metastudent/examples/test.result.BPO.txt
/usr/share/doc/metastudent/examples/test.result.CCO.txt
/usr/share/doc/metastudent/examples/test.result.MFO.txt
/usr/share/man/man1/metastudent.1.gz
/usr/share/metastudent/blastfilep.jar
/usr/share/metastudent/gossip.jar
/usr/share/metastudent/metastudentrc.default
/usr/share/metastudent/pp2.jar

Changelog

2018-10-22 - Andreas Tille <tille@debian.org>
metastudent (2.0.1-6) unstable; urgency=medium
* Team upload.
* Add link to issue asking for release tags
* Remove ancient X-Python-Version field
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Drop unneeded get-orig-source target
* Delete cruft from the Python build
2017-11-15 - Andreas Tille <tille@debian.org>
metastudent (2.0.1-5) unstable; urgency=medium
* Team upload.
* Moved packaging from SVN to Git
* debhelper 10
* Standards-Version: 4.1.1
* d/rules: do not parse d/changelog
2017-02-05 - Tatiana Malygina <merlettaia@gmail.com>
metastudent (2.0.1-4) unstable; urgency=medium
* Team upload
* add details on package testsuite failure to REAMDE.Debian,
add to README.test how to test manually (currently metastudent supports
legacy blast only and fails on blast+ output parsing).
* add patch to parse blast+ output correctly (closes: #848903).
* update debian/README.Debian and debian/README.test
2016-07-16 - Tatiana Malygina <merlettaia@gmail.com>
metastudent (2.0.1-3) unstable; urgency=medium
* Team upload.
* add allow-stderr restriction to debian/tests/control
2016-07-13 - Tatiana Malygina <merlettaia@gmail.com>
metastudent (2.0.1-2) unstable; urgency=medium
[ Tatiana Malygina ]
* Team upload.
* cme fix dpkg-control
* cme fix dpkg-copyright
* add hardening
* add testsuite, debian/README.test, debian/docs
[ Andreas Tille ]
* Copy configuration file to /etc/metastudentrc that overrides default
configuration to enable local user adjusting data path
* Fix sequence of copyright paragraphs to follow DEP5
* Add versioned Depends libgo-perl (>= 0.15-3)
2015-03-20 - Tobias Hamp <hampt@rostlab.org>
metastudent (2.0.1-1) unstable; urgency=low
* Added Cellular Component Ontology
* Updated GO annotations databases
* Updated Gene Ontology
* Predictions are now fully propagated to the root
* Updated URL for image generation
* fixed setup.py
2014-09-14 - Laszlo Kajan <lkajan@debian.org>
metastudent (1.0.11-2) unstable; urgency=medium
* Fixed VCS URL.
* Fixed python2 dependency handling.
2013-12-13 - Tobias Hamp <hampt@rostlab.org>
metastudent (1.0.11-1) unstable; urgency=low
* New upstream release.
2013-06-08 - Tobias Hamp <hampt@rostlab.org>
metastudent (1.0.10-1) unstable; urgency=low
* New upstream release.
2013-06-05 - Tobias Hamp <hampt@rostlab.org>
metastudent (1.0.9-1) unstable; urgency=low
* New upstream release.

See Also

Package Description
metche_1.2.4-1_all.deb configuration monitor to ease collective administration
meteo-qt-l10n_1.0.0-1_all.deb Application to display weather information (translations)
meteo-qt_1.0.0-1_amd64.deb Application to display weather information
meterbridge_0.9.2-13_amd64.deb Collection of Audio meters for the JACK audio server
meterec_0.9.2~ds0-2+b2_amd64.deb minimalistic multi track recorder
metis_5.1.0.dfsg-5+b2_amd64.deb Serial Graph Partitioning and Fill-reducing Matrix Ordering. Binaries
metview-data_5.3.0-2_all.deb Data needed for the Metview data analysis environment
metview_5.3.0-2_amd64.deb Interactive data visualization and analysis environment,
mew-beta-bin_7.0.50~6.8+0.20190228-1_amd64.deb external commands for Mew (development version)
mew-beta_7.0.50~6.8+0.20190228-1_all.deb mail reader supporting PGP/MIME for Emacs (development version)
mew-bin_6.8-4_amd64.deb external commands for Mew
mew_6.8-4_all.deb mail reader supporting PGP/MIME for Emacs
mfcuk_0.3.8+git20180720-1_amd64.deb MiFare Classic Universal toolKit
mffm-fftw-dev_1.7-4_amd64.deb C++ wrapper for the fftw.org C library (version 3)
mffm-fftw1_1.7-4_amd64.deb C++ wrapper for the fftw.org C library (version 3)
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