lagan_2.0-5+b1_amd64.deb


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Description

lagan - highly parametrizable pairwise global genome sequence aligner

Property Value
Distribution Debian Sid
Repository Debian Main amd64
Package filename lagan_2.0-5+b1_amd64.deb
Package name lagan
Package version 2.0
Package release 5+b1
Package architecture amd64
Package type deb
Category science
Homepage http://lagan.stanford.edu/lagan_web/index.shtml
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 174.78 KB
Installed size 820.00 KB

Alternatives

Package Version Architecture Repository
lagan_2.0-5_i386.deb 2.0 i386 Debian Main
lagan - - -

Requires

Name Value
libc6 >= 2.14
libgcc1 >= 1:3.0
libstdc++6 >= 5.2

Download

Type URL
Mirror ftp.br.debian.org
Binary Package lagan_2.0-5+b1_amd64.deb
Source Package lagan

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install lagan deb package:
    # sudo apt-get install lagan

Files

Path
/usr/bin/anal_gloc.pl
/usr/bin/anchors
/usr/bin/glocal
/usr/bin/lagan.pl
/usr/bin/lagan_chaos
/usr/bin/mlagan
/usr/bin/order
/usr/bin/prolagan
/usr/bin/rechaos.pl
/usr/bin/slagan-mfa.pl
/usr/bin/slagan.pl
/usr/bin/supermap.pl
/usr/bin/xmfa2mfa.pl
/usr/lib/lagan/blosum62.txt
/usr/lib/lagan/blosum62s.txt
/usr/lib/lagan/nucmatrix.txt
/usr/lib/lagan/bin/chaos
/usr/lib/lagan/utils/Glue
/usr/lib/lagan/utils/Utils.pm
/usr/lib/lagan/utils/bin2bl
/usr/lib/lagan/utils/bin2mf
/usr/lib/lagan/utils/cextract
/usr/lib/lagan/utils/cmerge2.pl
/usr/lib/lagan/utils/contigorder
/usr/lib/lagan/utils/cstat
/usr/lib/lagan/utils/dotplot
/usr/lib/lagan/utils/draft.pl
/usr/lib/lagan/utils/fa2xfa
/usr/lib/lagan/utils/flipchaos.pl
/usr/lib/lagan/utils/getbounds
/usr/lib/lagan/utils/getcontigpos
/usr/lib/lagan/utils/getlength
/usr/lib/lagan/utils/getoverlap
/usr/lib/lagan/utils/mextract.pl
/usr/lib/lagan/utils/mf2bin.pl
/usr/lib/lagan/utils/mpretty.pl
/usr/lib/lagan/utils/mproject.pl
/usr/lib/lagan/utils/mrun.pl
/usr/lib/lagan/utils/mrunfile.pl
/usr/lib/lagan/utils/mrunpairs.pl
/usr/lib/lagan/utils/msplit.pl
/usr/lib/lagan/utils/mviz.pl
/usr/lib/lagan/utils/overlay
/usr/lib/lagan/utils/rc
/usr/lib/lagan/utils/scorealign
/usr/lib/lagan/utils/scorecontigs
/usr/lib/lagan/utils/seqmerge
/usr/share/doc/lagan/README.Debian
/usr/share/doc/lagan/README.FIRST
/usr/share/doc/lagan/README.chaos.gz
/usr/share/doc/lagan/README.lagan
/usr/share/doc/lagan/README.mlagan
/usr/share/doc/lagan/README.shuffle
/usr/share/doc/lagan/README.tools.gz
/usr/share/doc/lagan/changelog.Debian.amd64.gz
/usr/share/doc/lagan/changelog.Debian.gz
/usr/share/doc/lagan/copyright
/usr/share/doc/lagan/examples/sample.fasta
/usr/share/doc/lagan/examples/sample.params
/usr/share/doc/lagan/examples/test.score
/usr/share/lintian/overrides/lagan
/usr/share/man/man1/mlagan.1.gz

Changelog

2019-08-16 - Steffen Moeller <moeller@debian.org>
lagan (2.0-5) unstable; urgency=medium
* Team upload
[ Gianfranco Costamagna ]
* removed "inline" helps to avoid FTBFS (Closes: #925728)
[ Steffen Moeller ]
* <ctype.h> included to help FTBFS
* verbose builds, please
2019-06-11 - Andreas Tille <tille@debian.org>
lagan (2.0-4) unstable; urgency=medium
[ Helmut Grohne ]
* fix insane upstream build system
Closes: #929590
[ Andreas Tille ]
* Standards-Version: 4.3.0
2018-12-04 - Andreas Tille <tille@debian.org>
lagan (2.0-3) unstable; urgency=medium
* Upload to unstable
* debhelper 11
* Drop useless get-orig-source target
* Remove trailing whitespace in debian/changelog
* Move /usr/bin/chaos to /usr/lib/lagan/bin
Closes: #914687
* debian/README.Debian: Document move of /usr/bin/chaos
* Propagate hardening and debug options
2018-09-07 - Steffen Moeller <moeller@debian.org>
lagan (2.0-2) experimental; urgency=low
* Initial release to experimental to invite peer review (Closes: #908215).
* Added man page for mlagan, also added *.pl scripts to /usr/bin
* Added embarrassingly simple test routine to run "mlagan -h"
* Solved compile time "ambiguity" error
* d/control:
- Bumped policy to 4.2.1
- Adjusted URLs to repository
* d/changelog: updated GSF address
* lintian overrides for .pl endings
2013-11-15 - Andreas Tille <tille@debian.org>
lagan (2.0-1) UNRELEASED; urgency=low
* TODO:
- fix installation location possibly wrapper script featuring
some $lagandir path variable (/usr/lib/lagan ???)
- manpages
- permissions
- hardening
- testing
* Moved packaging from SVN to Git

See Also

Package Description
lakai_0.1-2+b1_amd64.deb transfers samples between a PC and an AKAI sampler
lam-mpidoc_7.1.4-6_all.deb Documentation for the Message Passing Interface standard
lam-runtime_7.1.4-6+b1_amd64.deb LAM runtime environment for executing parallel programs
lam4-dev_7.1.4-6+b1_amd64.deb Development of parallel programs using LAM
lamarc_2.1.10.1+dfsg-4_amd64.deb Likelihood Analysis with Metropolis Algorithm using Random Coalescence
lambda-align2_2.0.0-6_amd64.deb Local Aligner for Massive Biological DatA - v2
lambda-align_1.0.3-5_amd64.deb Local Aligner for Massive Biological DatA
lambdabot_5.2-1_amd64.deb Development tool and advanced IRC bot
lambdahack_0.8.3.0-4+b2_amd64.deb tactical squad ASCII roguelike dungeon crawler game engine
lame-doc_3.100-2_all.deb MP3 encoding library (documentation)
lame_3.100-2+b1_amd64.deb MP3 encoding library (frontend)
lammps-data_0~20181211.gitad1b1897d+dfsg1-2_all.deb Molecular Dynamics Simulator. Data (potentials)
lammps-doc_0~20181211.gitad1b1897d+dfsg1-2_all.deb Molecular Dynamics Simulator. Documentation and examples
lammps_0~20181211.gitad1b1897d+dfsg1-2_amd64.deb Molecular Dynamics Simulator
langdrill_0.3-8_amd64.deb language drills to test vocabulary
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