gbrowse_2.56+dfsg-3_all.deb


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Description

gbrowse - GMOD Generic Genome Browser

Property Value
Distribution Debian Sid
Repository Debian Main amd64
Package name gbrowse
Package version 2.56+dfsg
Package release 3
Package architecture all
Package type deb
Installed size 6.85 KB
Download size 2.26 MB
Official Mirror ftp.br.debian.org
Description -

Alternatives

Package Version Architecture Repository
gbrowse_2.56+dfsg-3_all.deb 2.56+dfsg all Debian Main
gbrowse - - -

Requires

Name Value
apache2 >= 2.4
bioperl -
httpd-cgi -
libbio-coordinate-perl -
libbio-graphics-perl >= 2.31
libcgi-session-perl -
libdbd-sqlite3-perl -
libgd-gd2-noxpm-perl -
libgd-gd2-perl -
libhttp-daemon-perl -
libio-string-perl -
libjs-prototype -
libjs-scriptaculous -
libjson-perl -
libstatistics-descriptive-perl -
libterm-readkey-perl -
libvm-ec2-perl -
libwww-perl -
lsb-base >= 3.0-6
perl -
sqlite3 -

Download

Type URL
Binary Package gbrowse_2.56+dfsg-3_all.deb
Source Package gbrowse

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install gbrowse deb package:
    # sudo apt-get install gbrowse

Files

Path
/etc/apache2/conf-available/gbrowse.conf
/etc/default/gbrowse-aws-balancer
/etc/default/gbrowse-slave
/etc/gbrowse/ConfigData.pm
/etc/gbrowse/GBrowse.conf
/etc/gbrowse/aws_balancer.conf
/etc/gbrowse/detail_select_menu.conf
/etc/gbrowse/enzymes.txt
/etc/gbrowse/log4perl.conf
/etc/gbrowse/pop_demo.conf
/etc/gbrowse/renderfarm.conf
/etc/gbrowse/slave_preload.conf
/etc/gbrowse/submitter_plugin.conf
/etc/gbrowse/volvox.conf
/etc/gbrowse/yeast_chr1+2.conf
/etc/gbrowse/yeast_renderfarm.conf
/etc/gbrowse/yeast_simple.conf
/etc/gbrowse/MobyServices/GbrowseServices.PMS
/etc/gbrowse/MobyServices/GbrowseServices.pm
/etc/gbrowse/MobyServices/b64_encoded_gif_renderer.pm
/etc/gbrowse/MobyServices/b64_encoded_jpeg_renderer.pm
/etc/gbrowse/MobyServices/moby.conf
/etc/gbrowse/MobyServices/text_formatted_renderer.pm
/etc/gbrowse/MobyServices/text_html_renderer.pm
/etc/gbrowse/MobyServices/text_plain_renderer.pm
/etc/gbrowse/MobyServices/text_xml_renderer.pm
/etc/gbrowse/languages/POSIX.pm
/etc/gbrowse/languages/de.pm
/etc/gbrowse/languages/en.pm
/etc/gbrowse/languages/es.pm
/etc/gbrowse/languages/fr.pm
/etc/gbrowse/languages/is.pm
/etc/gbrowse/languages/it.pm
/etc/gbrowse/languages/ja.pm
/etc/gbrowse/languages/ko.pm
/etc/gbrowse/languages/nl.pm
/etc/gbrowse/languages/pl.pm
/etc/gbrowse/languages/ru.pm
/etc/gbrowse/languages/zh.pm
/etc/gbrowse/languages/zh_cn.pm
/etc/gbrowse/plugins/AlignTwoSequences.pm
/etc/gbrowse/plugins/Aligner.pm
/etc/gbrowse/plugins/AttributeHiliter.pm
/etc/gbrowse/plugins/BatchDumper.pm
/etc/gbrowse/plugins/Blat.pm
/etc/gbrowse/plugins/CMapDumper.pm
/etc/gbrowse/plugins/CreateBlastDB.pm
/etc/gbrowse/plugins/FBTableDumper.pm
/etc/gbrowse/plugins/FastaDumper.pm
/etc/gbrowse/plugins/FilterTest.pm
/etc/gbrowse/plugins/GeneFinder.pm
/etc/gbrowse/plugins/LDAPAuthenticate.pm
/etc/gbrowse/plugins/OligoFinder.pm
/etc/gbrowse/plugins/PamAuthenticate.pm
/etc/gbrowse/plugins/PrimerDesigner.pm
/etc/gbrowse/plugins/ProteinDumper.pm
/etc/gbrowse/plugins/RandomGene.pm
/etc/gbrowse/plugins/RestrictionAnnotator.pm
/etc/gbrowse/plugins/SequenceDumper.pm
/etc/gbrowse/plugins/SimpleTrackFinder.pm
/etc/gbrowse/plugins/SinWave.pm
/etc/gbrowse/plugins/SourceTrackFinder.pm
/etc/gbrowse/plugins/Spectrogram.pm
/etc/gbrowse/plugins/Submitter.pm
/etc/gbrowse/plugins/TestAuthenticator.pm
/etc/gbrowse/plugins/TestFinder.pm
/etc/gbrowse/plugins/TrackDumper.pm
/etc/gbrowse/plugins/TrackFinder.pm
/etc/gbrowse/plugins/test.pm
/etc/gbrowse/synteny/oryza.synconf.disabled.conf
/etc/gbrowse/synteny/rice_synteny.conf
/etc/gbrowse/synteny/wild_rice_synteny.conf
/etc/gbrowse/themes/solid_gray_colors
/etc/gbrowse/themes/transparent_colors
/etc/gbrowse/themes/warm_colors
/etc/init.d/gbrowse-aws-balancer
/etc/init.d/gbrowse-slave
/usr/bin/bed2gff3
/usr/bin/gbrowse_aws_balancer
/usr/bin/gbrowse_change_passwd
/usr/bin/gbrowse_clean
/usr/bin/gbrowse_configure_slaves
/usr/bin/gbrowse_create_account
/usr/bin/gbrowse_grow_cloud_vol
/usr/bin/gbrowse_import_ucsc_db
/usr/bin/gbrowse_metadb_config
/usr/bin/gbrowse_set_admin_passwd
/usr/bin/gbrowse_slave
/usr/bin/gbrowse_syn_load_alignment_database
/usr/bin/gbrowse_syn_load_alignments_msa
/usr/bin/gbrowse_sync_aws_slave
/usr/bin/gtf2gff3
/usr/bin/load_genbank
/usr/bin/make_das_conf
/usr/bin/scan_gbrowse
/usr/bin/ucsc_genes2gff
/usr/bin/wiggle2gff3
/usr/lib/cgi-bin/gbrowse/das
/usr/lib/cgi-bin/gbrowse/gbgff
/usr/lib/cgi-bin/gbrowse/gbrowse
/usr/lib/cgi-bin/gbrowse/gbrowse_details
/usr/lib/cgi-bin/gbrowse/gbrowse_gmap
/usr/lib/cgi-bin/gbrowse/gbrowse_img
/usr/lib/cgi-bin/gbrowse/gbrowse_key_img
/usr/lib/cgi-bin/gbrowse/gbrowse_login
/usr/lib/cgi-bin/gbrowse/gbrowse_syn
/usr/share/doc/gbrowse/README.Debian
/usr/share/doc/gbrowse/README.gff3.gz
/usr/share/doc/gbrowse/README.gz
/usr/share/doc/gbrowse/changelog.Debian.gz
/usr/share/doc/gbrowse/changelog.gz
/usr/share/doc/gbrowse/copyright
/usr/share/gbrowse/htdocs/annotation_help.html
/usr/share/gbrowse/htdocs/cloud_index.html
/usr/share/gbrowse/htdocs/gbrowse_karyotype_help.html
/usr/share/gbrowse/htdocs/gbrowse_syn_help.html
/usr/share/gbrowse/htdocs/general_help.html
/usr/share/gbrowse/htdocs/general_help.html.zh
/usr/share/gbrowse/htdocs/gmod_cog.jpeg
/usr/share/gbrowse/htdocs/i
/usr/share/gbrowse/htdocs/index.html
/usr/share/gbrowse/htdocs/vbox_index.html
/usr/share/gbrowse/htdocs/css/gbrowse.css
/usr/share/gbrowse/htdocs/css/gbrowse_autocomplete.css
/usr/share/gbrowse/htdocs/css/gbrowse_elements.css
/usr/share/gbrowse/htdocs/css/gbrowse_solid.css
/usr/share/gbrowse/htdocs/css/gbrowse_transparent.css
/usr/share/gbrowse/htdocs/css/gbrowse_warm.css
/usr/share/gbrowse/htdocs/css/karyotype.css
/usr/share/gbrowse/htdocs/css/menulink.png
/usr/share/gbrowse/htdocs/css/menulink_active.png
/usr/share/gbrowse/htdocs/css/snapshots.css
/usr/share/gbrowse/htdocs/css/subtracktable.css
/usr/share/gbrowse/htdocs/css/titlebar-default.css
/usr/share/gbrowse/htdocs/css/titlebar-safari.css
/usr/share/gbrowse/htdocs/css/tracks.css
/usr/share/gbrowse/htdocs/css/dropdown/default_theme.css
/usr/share/gbrowse/htdocs/css/dropdown/dropdown.css
/usr/share/gbrowse/htdocs/css/dropdown/helper.css
/usr/share/gbrowse/htdocs/css/dropdown/images/favicon.ico
/usr/share/gbrowse/htdocs/css/dropdown/images/icon.png
/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-down-on.png
/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-down-open.png
/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-down.png
/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left-on.png
/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left-open.png
/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-left.png
/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-right-on.png
/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-right-open.png
/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-right.png
/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-up-on.png
/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-up-open.png
/usr/share/gbrowse/htdocs/css/dropdown/images/nav-arrow-up.png
/usr/share/gbrowse/htdocs/css/dropdown/images/pattern1.png
/usr/share/gbrowse/htdocs/css/dropdown/images/pattern2.png
/usr/share/gbrowse/htdocs/css/dropdown/images/pattern3.png
/usr/share/gbrowse/htdocs/example_scripts/README
/usr/share/gbrowse/htdocs/example_scripts/gbrowse_get_sessionid.pl
/usr/share/gbrowse/htdocs/example_scripts/gbrowse_new_sessionid.pl
/usr/share/gbrowse/htdocs/example_scripts/gbrowse_upload_data.pl
/usr/share/gbrowse/htdocs/example_scripts/gbrowse_upload_file.pl
/usr/share/gbrowse/htdocs/example_scripts/index.html
/usr/share/gbrowse/htdocs/example_scripts/test_file.bed
/usr/share/gbrowse/htdocs/images/backgrounds/cloud.jpg
/usr/share/gbrowse/htdocs/images/backgrounds/lrock005.jpg
/usr/share/gbrowse/htdocs/images/backgrounds/steel.jpg
/usr/share/gbrowse/htdocs/images/balloons/GBubble/balloon.png
/usr/share/gbrowse/htdocs/images/balloons/GBubble/balloon_ie.png
/usr/share/gbrowse/htdocs/images/balloons/GBubble/close.png
/usr/share/gbrowse/htdocs/images/balloons/GBubble/down_left.png
/usr/share/gbrowse/htdocs/images/balloons/GBubble/down_right.png
/usr/share/gbrowse/htdocs/images/balloons/GBubble/up_left.png
/usr/share/gbrowse/htdocs/images/balloons/GBubble/up_right.png
/usr/share/gbrowse/htdocs/images/balloons/GPlain/balloon.png
/usr/share/gbrowse/htdocs/images/balloons/GPlain/close.png
/usr/share/gbrowse/htdocs/images/balloons/GPlain/down_left.png
/usr/share/gbrowse/htdocs/images/balloons/GPlain/down_right.png
/usr/share/gbrowse/htdocs/images/balloons/GPlain/up_left.png
/usr/share/gbrowse/htdocs/images/balloons/GPlain/up_right.png
/usr/share/gbrowse/htdocs/images/buttons/ajax-loader.gif
/usr/share/gbrowse/htdocs/images/buttons/blue_peaks.png
/usr/share/gbrowse/htdocs/images/buttons/check.png
/usr/share/gbrowse/htdocs/images/buttons/cursor-ewmove.ico
/usr/share/gbrowse/htdocs/images/buttons/dark_0.4_pixel.png
/usr/share/gbrowse/htdocs/images/buttons/download.png
/usr/share/gbrowse/htdocs/images/buttons/empty.png
/usr/share/gbrowse/htdocs/images/buttons/ex.png
/usr/share/gbrowse/htdocs/images/buttons/ficon.png
/usr/share/gbrowse/htdocs/images/buttons/ficon_2.png
/usr/share/gbrowse/htdocs/images/buttons/fmini.png
/usr/share/gbrowse/htdocs/images/buttons/fmini_2.png
/usr/share/gbrowse/htdocs/images/buttons/green.gif
/usr/share/gbrowse/htdocs/images/buttons/green1.gif
/usr/share/gbrowse/htdocs/images/buttons/green2.gif
/usr/share/gbrowse/htdocs/images/buttons/green3.gif
/usr/share/gbrowse/htdocs/images/buttons/green4.gif
/usr/share/gbrowse/htdocs/images/buttons/green5.gif
/usr/share/gbrowse/htdocs/images/buttons/green6.gif
/usr/share/gbrowse/htdocs/images/buttons/green7.gif
/usr/share/gbrowse/htdocs/images/buttons/green8.gif
/usr/share/gbrowse/htdocs/images/buttons/green_l1.gif
/usr/share/gbrowse/htdocs/images/buttons/green_l2.gif
/usr/share/gbrowse/htdocs/images/buttons/green_r1.gif
/usr/share/gbrowse/htdocs/images/buttons/green_r2.gif
/usr/share/gbrowse/htdocs/images/buttons/grey.png
/usr/share/gbrowse/htdocs/images/buttons/grey_0.4_pixel.png
/usr/share/gbrowse/htdocs/images/buttons/menu.png
/usr/share/gbrowse/htdocs/images/buttons/minus.gif
/usr/share/gbrowse/htdocs/images/buttons/minus.png
/usr/share/gbrowse/htdocs/images/buttons/minus12.png
/usr/share/gbrowse/htdocs/images/buttons/mminus.png
/usr/share/gbrowse/htdocs/images/buttons/mplus.gif
/usr/share/gbrowse/htdocs/images/buttons/mplus.png
/usr/share/gbrowse/htdocs/images/buttons/opacity_thumb.png
/usr/share/gbrowse/htdocs/images/buttons/open_open.png
/usr/share/gbrowse/htdocs/images/buttons/panleft.png
/usr/share/gbrowse/htdocs/images/buttons/panleft2.png
/usr/share/gbrowse/htdocs/images/buttons/panright.png
/usr/share/gbrowse/htdocs/images/buttons/panright2.png
/usr/share/gbrowse/htdocs/images/buttons/plus.gif
/usr/share/gbrowse/htdocs/images/buttons/plus.png
/usr/share/gbrowse/htdocs/images/buttons/pop_in.png
/usr/share/gbrowse/htdocs/images/buttons/pop_out.png
/usr/share/gbrowse/htdocs/images/buttons/query.png
/usr/share/gbrowse/htdocs/images/buttons/red.gif
/usr/share/gbrowse/htdocs/images/buttons/red1.gif
/usr/share/gbrowse/htdocs/images/buttons/red2.gif
/usr/share/gbrowse/htdocs/images/buttons/red3.gif
/usr/share/gbrowse/htdocs/images/buttons/red4.gif
/usr/share/gbrowse/htdocs/images/buttons/red5.gif
/usr/share/gbrowse/htdocs/images/buttons/red6.gif
/usr/share/gbrowse/htdocs/images/buttons/red7.gif
/usr/share/gbrowse/htdocs/images/buttons/red8.gif
/usr/share/gbrowse/htdocs/images/buttons/red_peaks.png
/usr/share/gbrowse/htdocs/images/buttons/ruler-icon.png
/usr/share/gbrowse/htdocs/images/buttons/ruler.png
/usr/share/gbrowse/htdocs/images/buttons/share.png
/usr/share/gbrowse/htdocs/images/buttons/snap_check.png
/usr/share/gbrowse/htdocs/images/buttons/snap_down.png
/usr/share/gbrowse/htdocs/images/buttons/snap_ex.png
/usr/share/gbrowse/htdocs/images/buttons/snap_mail.png
/usr/share/gbrowse/htdocs/images/buttons/snap_share.png
/usr/share/gbrowse/htdocs/images/buttons/snap_trash.png
/usr/share/gbrowse/htdocs/images/buttons/sortable.gif
/usr/share/gbrowse/htdocs/images/buttons/sorted_down.gif
/usr/share/gbrowse/htdocs/images/buttons/sorted_up.gif
/usr/share/gbrowse/htdocs/images/buttons/spinner.gif
/usr/share/gbrowse/htdocs/images/buttons/square.png
/usr/share/gbrowse/htdocs/images/buttons/square.xpm
/usr/share/gbrowse/htdocs/images/buttons/tools.png
/usr/share/gbrowse/htdocs/images/buttons/trash.gif
/usr/share/gbrowse/htdocs/images/buttons/trash.png
/usr/share/gbrowse/htdocs/images/help/detail.gif
/usr/share/gbrowse/htdocs/images/help/detail.png
/usr/share/gbrowse/htdocs/images/help/detail_scale.gif
/usr/share/gbrowse/htdocs/images/help/detail_scale.png
/usr/share/gbrowse/htdocs/images/help/landmark.gif
/usr/share/gbrowse/htdocs/images/help/landmark.png
/usr/share/gbrowse/htdocs/images/help/multiple_hits.png
/usr/share/gbrowse/htdocs/images/help/navbar.gif
/usr/share/gbrowse/htdocs/images/help/navbar.png
/usr/share/gbrowse/htdocs/images/help/numeric+data.gif
/usr/share/gbrowse/htdocs/images/help/overview+detail.gif
/usr/share/gbrowse/htdocs/images/help/overview+detail.png
/usr/share/gbrowse/htdocs/images/help/overview.gif
/usr/share/gbrowse/htdocs/images/help/remote.png
/usr/share/gbrowse/htdocs/images/help/search+settings.gif
/usr/share/gbrowse/htdocs/images/help/sugarcane_sorghum_synteny.png
/usr/share/gbrowse/htdocs/images/help/track+settings.gif
/usr/share/gbrowse/htdocs/images/help/upload+edit.gif
/usr/share/gbrowse/htdocs/images/help/upload+remote.gif
/usr/share/gbrowse/htdocs/images/help/upload.gif
/usr/share/gbrowse/htdocs/images/help/upload.png
/usr/share/gbrowse/htdocs/images/help/upload_field.png
/usr/share/gbrowse/htdocs/images/help/upload_list.png
/usr/share/gbrowse/htdocs/images/help/worm_exons_spec.png
/usr/share/gbrowse/htdocs/images/help/worm_telomeric_spec.png
/usr/share/gbrowse/htdocs/images/help/yeast_I_genes_spec.png
/usr/share/gbrowse/htdocs/images/openid/aim-logo.png
/usr/share/gbrowse/htdocs/images/openid/blogspot-logo.png
/usr/share/gbrowse/htdocs/images/openid/google-logo.gif
/usr/share/gbrowse/htdocs/images/openid/livejournal-logo.png
/usr/share/gbrowse/htdocs/images/openid/myopenid-logo.png
/usr/share/gbrowse/htdocs/images/openid/openid-logo.gif
/usr/share/gbrowse/htdocs/images/openid/yahoo-logo.png
/usr/share/gbrowse/htdocs/js/GBox.js
/usr/share/gbrowse/htdocs/js/ajax_upload.js
/usr/share/gbrowse/htdocs/js/autocomplete.js
/usr/share/gbrowse/htdocs/js/balloon.config.js
/usr/share/gbrowse/htdocs/js/balloon.js
/usr/share/gbrowse/htdocs/js/box.js
/usr/share/gbrowse/htdocs/js/builder.js
/usr/share/gbrowse/htdocs/js/buttons.js
/usr/share/gbrowse/htdocs/js/controller.js
/usr/share/gbrowse/htdocs/js/controls.js
/usr/share/gbrowse/htdocs/js/detailSelect.js
/usr/share/gbrowse/htdocs/js/dragdrop.js
/usr/share/gbrowse/htdocs/js/effects.js
/usr/share/gbrowse/htdocs/js/karyotype.js
/usr/share/gbrowse/htdocs/js/login.js
/usr/share/gbrowse/htdocs/js/menu.js
/usr/share/gbrowse/htdocs/js/overviewSelect.js
/usr/share/gbrowse/htdocs/js/prototype.js
/usr/share/gbrowse/htdocs/js/regionSelect.js
/usr/share/gbrowse/htdocs/js/rubber.js
/usr/share/gbrowse/htdocs/js/ruler.js
/usr/share/gbrowse/htdocs/js/scriptaculous.js
/usr/share/gbrowse/htdocs/js/scrollfix.js
/usr/share/gbrowse/htdocs/js/slider.js
/usr/share/gbrowse/htdocs/js/snapshotManager.js
/usr/share/gbrowse/htdocs/js/sound.js
/usr/share/gbrowse/htdocs/js/subtracktable.css
/usr/share/gbrowse/htdocs/js/subtracktable.js
/usr/share/gbrowse/htdocs/js/tabs.js
/usr/share/gbrowse/htdocs/js/toggle.js
/usr/share/gbrowse/htdocs/js/track.js
/usr/share/gbrowse/htdocs/js/trackFavorites.js
/usr/share/gbrowse/htdocs/js/track_configure.js
/usr/share/gbrowse/htdocs/js/track_pan.js
/usr/share/gbrowse/htdocs/js/unittest.js
/usr/share/gbrowse/htdocs/js/x_cook.js
/usr/share/gbrowse/htdocs/tutorial/tutorial.css
/usr/share/gbrowse/htdocs/tutorial/tutorial.html
/usr/share/gbrowse/htdocs/tutorial/tutorial.phyTreeEdit.html
/usr/share/gbrowse/htdocs/tutorial/bin/expression_levels.pl
/usr/share/gbrowse/htdocs/tutorial/bin/make_exon.pl
/usr/share/gbrowse/htdocs/tutorial/bin/random_dna.pl
/usr/share/gbrowse/htdocs/tutorial/bin/random_feature.pl
/usr/share/gbrowse/htdocs/tutorial/bin/random_segments.pl
/usr/share/gbrowse/htdocs/tutorial/bin/reformat.pl
/usr/share/gbrowse/htdocs/tutorial/conf_files/HEADER.html
/usr/share/gbrowse/htdocs/tutorial/conf_files/elegans_core.conf
/usr/share/gbrowse/htdocs/tutorial/conf_files/elegans_extra.conf
/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox.conf
/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_Phylo.conf
/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_final.conf
/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_final_withPhylo.conf
/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_halfway.conf
/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_quarter.conf
/usr/share/gbrowse/htdocs/tutorial/conf_files/volvox_refactored.conf
/usr/share/gbrowse/htdocs/tutorial/data_files/HEADER.html
/usr/share/gbrowse/htdocs/tutorial/data_files/dog1_1700.wig
/usr/share/gbrowse/htdocs/tutorial/data_files/elegans.fa
/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_acceptor.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_core.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_deletion.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_expression.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_extra.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_repeats.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/elegans_sts.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/ests.fa
/usr/share/gbrowse/htdocs/tutorial/data_files/species.tre
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox.fa
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_all.fa
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_all.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_array.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_bacs.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_domains.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_est_targets.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_geneproducts.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_genes.gff3
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/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_matches.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_microarray.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_microarray.wig
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign.fa
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_phyloalign_wigentries.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_remarks.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_trace.gff3
/usr/share/gbrowse/htdocs/tutorial/data_files/volvox_trace.scf
/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_acceptor.gff
/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_core.gff
/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_deletion.gff
/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_expression.gff
/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_extra.gff
/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_repeats.gff
/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/elegans_sts.gff
/usr/share/gbrowse/htdocs/tutorial/dbgff/data_files/volvox1.gff
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/usr/share/gbrowse/htdocs/tutorial/figures/wiggle_density.png
/usr/share/lintian/overrides/gbrowse
/usr/share/man/man1/bed2gff3.1p.gz
/usr/share/man/man1/gbrowse.1.gz
/usr/share/man/man1/gbrowse_aws_balancer.1p.gz
/usr/share/man/man1/gbrowse_change_passwd.1.gz
/usr/share/man/man1/gbrowse_clean.1p.gz
/usr/share/man/man1/gbrowse_create_account.1.gz
/usr/share/man/man1/gbrowse_grow_cloud_vol.1p.gz
/usr/share/man/man1/gbrowse_import_ucsc_db.1.gz
/usr/share/man/man1/gbrowse_metadb_config.1.gz
/usr/share/man/man1/gbrowse_set_admin_passwd.1.gz
/usr/share/man/man1/gbrowse_slave.1.gz
/usr/share/man/man1/gbrowse_syn_load_alignment_database.1.gz
/usr/share/man/man1/gbrowse_syn_load_alignments_msa.1.gz
/usr/share/man/man1/gbrowse_sync_aws_slave.1p.gz
/usr/share/man/man1/gtf2gff3.1p.gz
/usr/share/man/man1/load_genbank.1p.gz
/usr/share/man/man1/make_das_conf.1p.gz
/usr/share/man/man1/scan_gbrowse.1.gz
/usr/share/man/man1/ucsc_genes2gff.1p.gz
/usr/share/man/man1/wiggle2gff3.1p.gz
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/usr/share/man/man3/Bio::DB::GFF::Aggregator::reftranscript.3pm.gz
/usr/share/man/man3/Bio::DB::GFF::Aggregator::waba_alignment.3pm.gz
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/usr/share/man/man3/Bio::Graphics::Browser2::Markup.3pm.gz
/usr/share/man/man3/Bio::Graphics::Browser2::OptionPick.3pm.gz
/usr/share/man/man3/Bio::Graphics::Browser2::PadAlignment.3pm.gz
/usr/share/man/man3/Bio::Graphics::Browser2::Plugin.3pm.gz
/usr/share/man/man3/Bio::Graphics::Browser2::Plugin::AuthPlugin.3pm.gz
/usr/share/man/man3/Bio::Graphics::Browser2::PluginSet.3pm.gz
/usr/share/man/man3/Bio::Graphics::Browser2::Realign.3pm.gz
/usr/share/man/man3/Bio::Graphics::Browser2::Region.3pm.gz
/usr/share/man/man3/Bio::Graphics::Browser2::RegionSearch.3pm.gz
/usr/share/man/man3/Bio::Graphics::Browser2::RemoteSet.3pm.gz
/usr/share/man/man3/Bio::Graphics::Browser2::Render.3pm.gz
/usr/share/man/man3/Bio::Graphics::Browser2::Render::Slave::AWS_Balancer.3pm.gz
/usr/share/man/man3/Bio::Graphics::Browser2::Render::Slave::Status.3pm.gz
/usr/share/man/man3/Bio::Graphics::Browser2::RenderPanels.3pm.gz
/usr/share/man/man3/Bio::Graphics::Browser2::Util.3pm.gz
/usr/share/man/man3/CGI::Toggle.3pm.gz
/usr/share/man/man3/GBrowse::ConfigData.3pm.gz
/usr/share/man/man3/Legacy::Graphics::Browser.3pm.gz
/usr/share/perl5/Bio/DB/Tagger.pm
/usr/share/perl5/Bio/DB/GFF/Aggregator/match_gap.pm
/usr/share/perl5/Bio/DB/GFF/Aggregator/reftranscript.pm
/usr/share/perl5/Bio/DB/GFF/Aggregator/waba_alignment.pm
/usr/share/perl5/Bio/DB/GFF/Aggregator/wormbase_gene.pm
/usr/share/perl5/Bio/DB/SeqFeature/Store/Alias.pm
/usr/share/perl5/Bio/DB/SeqFeature/Store/BedLoader.pm
/usr/share/perl5/Bio/DB/Tagger/Tag.pm
/usr/share/perl5/Bio/DB/Tagger/mysql.pm
/usr/share/perl5/Bio/Graphics/Browser2.pm
/usr/share/perl5/Bio/Graphics/GBrowseFeature.pm
/usr/share/perl5/Bio/Graphics/Karyotype.pm
/usr/share/perl5/Bio/Graphics/Browser2/Action.pm
/usr/share/perl5/Bio/Graphics/Browser2/AuthorizedFeatureFile.pm
/usr/share/perl5/Bio/Graphics/Browser2/CachedTrack.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataBase.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataLoader.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataSource.pm
/usr/share/perl5/Bio/Graphics/Browser2/ExternalData.pm
/usr/share/perl5/Bio/Graphics/Browser2/GFFhelper.pm
/usr/share/perl5/Bio/Graphics/Browser2/I18n.pm
/usr/share/perl5/Bio/Graphics/Browser2/Markup.pm
/usr/share/perl5/Bio/Graphics/Browser2/OptionPick.pm
/usr/share/perl5/Bio/Graphics/Browser2/PadAlignment.pm
/usr/share/perl5/Bio/Graphics/Browser2/Plugin.pm
/usr/share/perl5/Bio/Graphics/Browser2/PluginSet.pm
/usr/share/perl5/Bio/Graphics/Browser2/Realign.pm
/usr/share/perl5/Bio/Graphics/Browser2/Region.pm
/usr/share/perl5/Bio/Graphics/Browser2/RegionSearch.pm
/usr/share/perl5/Bio/Graphics/Browser2/RemoteSet.pm
/usr/share/perl5/Bio/Graphics/Browser2/Render.pm
/usr/share/perl5/Bio/Graphics/Browser2/RenderPanels.pm
/usr/share/perl5/Bio/Graphics/Browser2/SendMail.pm
/usr/share/perl5/Bio/Graphics/Browser2/Session.pm
/usr/share/perl5/Bio/Graphics/Browser2/Shellwords.pm
/usr/share/perl5/Bio/Graphics/Browser2/SubtrackTable.pm
/usr/share/perl5/Bio/Graphics/Browser2/TrackDumper.pm
/usr/share/perl5/Bio/Graphics/Browser2/UserDB.pm
/usr/share/perl5/Bio/Graphics/Browser2/UserTracks.pm
/usr/share/perl5/Bio/Graphics/Browser2/Util.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataLoader/archive.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataLoader/bam.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataLoader/bed.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataLoader/bigbed.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataLoader/bigwig.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataLoader/featurefile.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataLoader/generic.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataLoader/gff.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataLoader/gff3.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataLoader/sam.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataLoader/useq.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataLoader/wig2bigwig.pm
/usr/share/perl5/Bio/Graphics/Browser2/DataLoader/wiggle.pm
/usr/share/perl5/Bio/Graphics/Browser2/Plugin/AuthPlugin.pm
/usr/share/perl5/Bio/Graphics/Browser2/Render/HTML.pm
/usr/share/perl5/Bio/Graphics/Browser2/Render/Login.pm
/usr/share/perl5/Bio/Graphics/Browser2/Render/Slave.pm
/usr/share/perl5/Bio/Graphics/Browser2/Render/SnapshotManager.pm
/usr/share/perl5/Bio/Graphics/Browser2/Render/TrackConfig.pm
/usr/share/perl5/Bio/Graphics/Browser2/Render/HTML/TrackListing.pm
/usr/share/perl5/Bio/Graphics/Browser2/Render/HTML/TrackListing/Categories.pm
/usr/share/perl5/Bio/Graphics/Browser2/Render/Slave/AWS_Balancer.pm
/usr/share/perl5/Bio/Graphics/Browser2/Render/Slave/Status.pm
/usr/share/perl5/Bio/Graphics/Browser2/TrackDumper/RichSeqMaker.pm
/usr/share/perl5/Bio/Graphics/Browser2/UserTracks/Database.pm
/usr/share/perl5/Bio/Graphics/Browser2/UserTracks/Filesystem.pm
/usr/share/perl5/CGI/Toggle.pm
/usr/share/perl5/GBrowse/ConfigData.pm
/usr/share/perl5/Legacy/DB/SyntenyBlock.pm
/usr/share/perl5/Legacy/DB/SyntenyIO.pm
/usr/share/perl5/Legacy/Graphics/Browser.pm
/usr/share/perl5/Legacy/Graphics/Browser/I18n.pm
/usr/share/perl5/Legacy/Graphics/Browser/PageSettings.pm
/usr/share/perl5/Legacy/Graphics/Browser/Synteny.pm
/usr/share/perl5/Legacy/Graphics/Browser/Util.pm

Changelog

2017-09-15 - Andreas Tille <tille@debian.org>
gbrowse (2.56+dfsg-3) unstable; urgency=medium
* Fix broken link
Closes: #857213
* Standards-Version: 4.1.0 (no changes needed)
2017-01-20 - Andreas Tille <tille@debian.org>
gbrowse (2.56+dfsg-2) unstable; urgency=medium
* Remove duplicated file which is also available in libbio-perl-perl
Closes: #851999
2017-01-18 - Andreas Tille <tille@debian.org>
gbrowse (2.56+dfsg-1) unstable; urgency=medium
[ Olivier Sallou ]
* Fix deprecated unescaped left brace in regex
Closes: #826458
[ Andreas Tille ]
* New upstream version
Closes: #848236
* Symlink OpenID constumer secret to /etc/gbrowse/ConfigData.pm
and document this in README.Debian
Closes: #833885
* debhelper 10
* d/watch: version=4
* Exclude some tests via debian/tests/pkg-perl/smoke-skip
* Add missing Build-Depends: libbio-graphics-perl, libbio-coordinate-perl
* Enhance descriptions
* hardening=+all
* Remove unused lintian override
* Add $remote_fs to required-start
* Add missing Depends: lsb-base (>= 3.0-6)
* Fix runlevel of initscript
* Fix manpage synopsises and spelling
* Init lsb functions in all init scripts
* Add missing "update-rc.d gbrowse-aws-balancer" calls
2016-06-29 - Andreas Tille <tille@debian.org>
gbrowse (2.54+dfsg-7) unstable; urgency=medium
* Moved packaging from SVN to Git
* cme fix dpkg-control
* Add myself to uploaders
* Testsuite: autopkgtest-pkg-perl
2015-12-02 - Andreas Tille <tille@debian.org>
gbrowse (2.54+dfsg-6) unstable; urgency=medium
* Team upload
[ Charles Plessy ]
* Use and build-depend on file-rename directly as /usr/bin/rename
will move out from the perl package.
[ Andreas Tille ]
* Echo hint to switch to Files-Excluded for next upstream version
* Enable arch independent build by ensuring that target directories
are existing
Closes: #806618
* Fix several lintian issues
2015-06-25 - Olivier Sallou <osallou@debian.org>
gbrowse (2.54+dfsg-5) unstable; urgency=medium
* d/control: add libcgi-pm-perl dependency for perl 5.22 transition
(Closes: #789734). 
switch to standards 3.9.6
2015-06-16 - Olivier Sallou <osallou@debian.org>
gbrowse (2.54+dfsg-4) unstable; urgency=medium
* d/control: add libmodule-build-perl dependency for perl 5.22 transition
(Closes: #788642). 
2014-06-30 - Olivier Sallou <osallou@debian.org>
gbrowse (2.54+dfsg-3) unstable; urgency=medium
[ gregor herrmann ]
* Don't hardcode /usr/lib/perl5 (Closes: #752345).
- debian/rules: use $Config{vendorarch}
- debian/gbrowse-calign.dirs: use $Config{vendorarch} and make executable
- debian/compat: bump to 9
[ Charles Plessy ]
* Drop bzip2 compression of the binary packages (xz is now the default).
* Normalised debian/copyright and debian/control with config-model-edit.
* Conforms to Policy version 3.9.5.
[ Olivier Sallou ]
* Community upload
* d/patches/source_init_functions: follow Policy 3.9.5
* d/control: add missing build deps
2013-05-25 - Olivier Sallou <osallou@debian.org>
gbrowse (2.54+dfsg-2) unstable; urgency=low
* Transition to apache 2.4 (Closes: #669830).
2012-12-15 - Olivier Sallou <osallou@debian.org>
gbrowse (2.54+dfsg-1) unstable; urgency=low
* New upstream release
* debian/control: increase min bio-graphics version

See Also

Package Description
gbsplay_0.0.93-2_amd64.deb Gameboy sound player
gbutils_5.7.1-1_amd64.deb utilities for command line econometrics
gcab_1.1-3_amd64.deb Microsoft Cabinet file manipulation tool
gcal-common_3.6.3-3_all.deb gcal architecture independent files
gcal_3.6.3-3+b3_amd64.deb program for calculating and printing calendars
gcalcli_4.0.0~a3-1_all.deb Google Calendar Command Line Interface
gcap_0.1.1-1_all.deb YouTube closed caption retriever
gcc-5-aarch64-linux-gnu-base_5.5.0-10cross1_amd64.deb GCC, the GNU Compiler Collection (base package)
gcc-5-aarch64-linux-gnu_5.5.0-10cross1_amd64.deb GNU C compiler
gcc-5-alpha-linux-gnu-base_5.5.0-10cross3_amd64.deb GCC, the GNU Compiler Collection (base package)
gcc-5-alpha-linux-gnu_5.5.0-10cross3_amd64.deb GNU C compiler
gcc-5-arm-linux-gnueabi-base_5.5.0-10cross1_amd64.deb GCC, the GNU Compiler Collection (base package)
gcc-5-arm-linux-gnueabi_5.5.0-10cross1_amd64.deb GNU C compiler
gcc-5-arm-linux-gnueabihf-base_5.5.0-10cross1_amd64.deb GCC, the GNU Compiler Collection (base package)
gcc-5-arm-linux-gnueabihf_5.5.0-10cross1_amd64.deb GNU C compiler
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