fastqc_0.11.5+dfsg-6_all.deb


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Description

fastqc - quality control for high throughput sequence data

Distribution: Debian Sid
Repository: Debian Main amd64
Package name: fastqc
Package version: 0.11.5+dfsg
Package release: 6
Package architecture: all
Package type: deb
Installed size: 536 B
Download size: 365.79 KB
Official Mirror: ftp.br.debian.org
Description: unavailable.

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    Source package: fastqc

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install fastqc deb package:
      # sudo apt-get install fastqc

    Changelog

    2016-12-08 - Sascha Steinbiss <satta@debian.org> fastqc (0.11.5+dfsg-6) unstable; urgency=medium * Team upload. * Avoid use of SAMFileReader to fix FTBFS. Closes: #846708 * Add autopkgtest cases and accompanying test data for SAM/BAM input files. * Make sure jar dependencies are found. Before fixing this, htsjdk classes were not found at runtime. This problem only surfaced with BAM/SAM inputs, which were not tested so far.

    2016-11-22 - Andreas Tille <tille@debian.org> fastqc (0.11.5+dfsg-5) unstable; urgency=medium [ Gilles Filippini ] * New patch drop-fast5.patch to temporarily drop support for fast5 file format. This way we can drop the build-dependency on libsis-jhdf5-java which doesn't support HDF5 1.10 yet (#842815). fast5 files can easily be converted to fastq using poretools. Closes: #844760 [ Andreas Tille ] * debhelper 10 * d/watch: version=4

    2016-09-01 - Dylan Aïssi <bob.dybian@gmail.com> fastqc (0.11.5+dfsg-4) unstable; urgency=low * Team upload. * Fix autopkgtest: add depend to unzip. * Install upstream changelog using dh_installchangelogs.

    2016-07-28 - Canberk Koç <canberkkoc@gmail.com> fastqc (0.11.5+dfsg-3) unstable; urgency=medium * Team upload. [ Canberk Koç ] * Autopkgtest added [ Andreas Tille ] * cme fix dpkg-control

    2016-04-06 - Steffen Moeller <moeller@debian.org> fastqc (0.11.5+dfsg-2) unstable; urgency=medium * Reintroduced omitted Configuration directory

    2016-03-20 - Andreas Tille <tille@debian.org> fastqc (0.11.5+dfsg-1) unstable; urgency=medium [ Steffen Moeller ] * Contribued EDAM ontology description to debian/upstream/edam [ Andreas Tille ] * New upstream version * Add compression method to watch file * cme fix dpkg-control

    2016-01-14 - Andreas Tille <tille@debian.org> fastqc (0.11.4+dfsg-3) unstable; urgency=medium * Build-Depends: libhtsjdk-java | libsam-java and try to enable htsjdk.jar in Build system

    2015-12-20 - Andreas Tille <tille@debian.org> fastqc (0.11.4+dfsg-2) unstable; urgency=medium * Add explicit Depends: default-jre | java7-runtime Closes: #784057

    2015-12-06 - Andreas Tille <tille@debian.org> fastqc (0.11.4+dfsg-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control * deban/watch: fix version mangling * New Build-Depends: ant, libsis-hdf5-java * DEP5 issue solved by proper sequence of paragraphs * replace debian/menu by debian/fastqc.desktop

    2014-08-28 - Andreas Tille <tille@debian.org> fastqc (0.11.2+dfsg-3) unstable; urgency=medium * d/control: Adapt Vcs-Fields to new location * d/rules: xz compression for repackaged upstream source * d/watch: uversionmangle instead of dversionmangle to get correct upstream tarball name * d/README.source: removed since outdated * d/manifest: Add /usr/share/java/commons-math3.jar (thanks for the patch to Danya Alexeyevsky <me.dendik@gmail.com>) Closes: #759543

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