chimeraslayer_20101212+dfsg1-2_all.deb


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Description

chimeraslayer - detects likely chimeras in PCR amplified DNA

Property Value
Distribution Debian Sid
Repository Debian Main amd64
Package filename chimeraslayer_20101212+dfsg1-2_all.deb
Package name chimeraslayer
Package version 20101212+dfsg1
Package release 2
Package architecture all
Package type deb
Category biology::nucleic-acids field::biology science
Homepage http://microbiomeutil.sourceforge.net/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 32.94 KB
Installed size 155.00 KB

Alternatives

Package Version Architecture Repository
chimeraslayer_20101212+dfsg1-2_all.deb 20101212+dfsg1 all Debian Main
chimeraslayer - - -

Requires

Name Value
blast2 -
cdbfasta -
microbiomeutil-data -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package chimeraslayer_20101212+dfsg1-2_all.deb
Source Package microbiomeutil

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install chimeraslayer deb package:
    # sudo apt-get install chimeraslayer

Files

Path
/usr/bin/chimeraslayer
/usr/lib/ChimeraSlayer/ChimeraSlayer.pl
/usr/lib/ChimeraSlayer/ChimeraParentSelector/CM_plotter.pl
/usr/lib/ChimeraSlayer/ChimeraParentSelector/CPC_to_CPS.pl
/usr/lib/ChimeraSlayer/ChimeraParentSelector/CPS_to_RENAST.pl
/usr/lib/ChimeraSlayer/ChimeraParentSelector/chimeraParentSelector.pl
/usr/lib/ChimeraSlayer/ChimeraParentSelector/run_chimeraParentSelector.pl
/usr/lib/ChimeraSlayer/ChimeraPhyloChecker/CPS_to_CPC.pl
/usr/lib/ChimeraSlayer/ChimeraPhyloChecker/ChimeraPhyloChecker.pl
/usr/lib/ChimeraSlayer/PerlLib/AlignCompare.pm
/usr/lib/ChimeraSlayer/PerlLib/BHStats.pm
/usr/lib/ChimeraSlayer/PerlLib/CdbTools.pm
/usr/lib/ChimeraSlayer/PerlLib/Fasta_reader.pm
/usr/lib/ChimeraSlayer/PerlLib/NAST_to_Eco_coords.pm
/usr/lib/ChimeraSlayer/PerlLib/TaxonomyGraph.pm
/usr/lib/ChimeraSlayer/util/CMCS_to_treeImg.pl
/usr/lib/ChimeraSlayer/util/CS_add_taxonomy.pl
/usr/lib/ChimeraSlayer/util/breakpoint_to_profile.pl
/usr/lib/ChimeraSlayer/util/merge_CM_CS_outputs.pl
/usr/lib/ChimeraSlayer/util/merge_CS_n_CM_breakpoints.pl
/usr/share/doc/chimeraslayer/changelog.Debian.gz
/usr/share/doc/chimeraslayer/copyright
/usr/share/doc/chimeraslayer/examples
/usr/share/man/man1/chimeraslayer.1.gz

Changelog

2018-07-05 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212+dfsg1-2) unstable; urgency=low
[ Steffen Moeller ]
* debian/upstream/metadata:
- Added references to registries
- yamllint cleanliness
[ Andreas Tille ]
* Remove unneeded get-orig-source target
* Remove Tim Booth from Uploaders (thanks for your work, Tim)
* Secure URI in watch file
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.4
* hardening=+all
2016-01-20 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212+dfsg1-1) unstable; urgency=low
* debian/copyright: s/BSD-like/BSD-3-clause/
* Moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
* Cleanup d/rules
* Fix build time tests and run these
* Add doc-base file
* d/watch: add missing repacksuffix
* Moved packaging from SVN to Git
* Cleaning up log files from past test runs
* Add autopkgtest
2013-07-22 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212+dfsg-1) unstable; urgency=low
* Initial release to Debian (Closes: #711086)
* Remove copyrighted logo images from upstream tarball (the logo is
only used in very short doc which works perfectly without this image)
* debian/control: Use anonscm Vcs addresses
2013-06-05 - Tim Booth <tbooth@ceh.ac.uk>
microbiomeutil (20101212-1ubuntu8) precise; urgency=low
* Bio-Linux rebuild with Andreas' fixes  
* ChimeraSlayer run from QIIME was not working.  Need to pre-compute
index files and add them to RESOURCES directory
* Also added missing direct dep on blast2
2013-06-04 - Andreas Tille <tille@debian.org>
microbiomeutil (20101212-2) unstable; urgency=low
* debian/copyright: DEP5 copyright
* debian/control:
- Added myself to uploaders
- Priority: optional (as per Debian Med policy)
- Droped DM-Upload-Allowed
- Standards-Version: 3.9.4
- Debhelper 9 (also d/compat)
- Dropped explicit quilt Build-Dependends
- better formatting
- Enhance long descriptions
* debian/rules:
- remove "--with quilt" because this is specified in source format
- Use xz compression for binaries
* debian/rules, debian/*.install, debian/*.links:
Rather use the usual debhelper input files
* Remove unneeded debian/README.* files and create debian/upstream
file with citation information
* Removed debian/{ChimeraSlayer,microbiomeutil.install} because
unneeded
* debian/*.1: Wrote manpages
* debian/microbiomeutil.links: Synonyms with camel case spelling
as in the provided documentation
* debian/patches/hardening.patch: Enable propagation of hardening options
2013-06-03 - Tim Booth <tbooth@ceh.ac.uk>
microbiomeutil (20101212-1ubuntu6) lucid; urgency=low
* Another patch needed to Perl code due to inappropriate use of
FindBin 
* Move to /usr/lib rather than /usr/share as per Lintian warnings.
* Set --with quilt on dh.  (Possibly not needed now?)
* Added better descriptions in debian/control
2011-04-11 - Tim Booth <tbooth@ceh.ac.uk>
microbiomeutil (20101212-1ubuntu1) lucid; urgency=low
* Split package into 4 binary packages.
2011-03-30 - Steffen Moeller <moeller@debian.org>
microbiomeutil (2010-11-1) UNRELEASED; urgency=low
* New upstream
2010-12-02 - Steffen Moeller <moeller@debian.org>
microbiomeutil (2010-11-02-1) UNRELEASED; urgency=low
* Initial packaging

See Also

Package Description
chipmunk-dev_6.1.5-1+b1_amd64.deb Fast and lightweight 2D rigid body physics library - devel
chipw_2.0.6-1.2+b2_amd64.deb custom level editor for TileWorld / Chip's Challengeā„¢
chirashi_1.4.0+git20160822+dfsg-4.1_all.deb D-Bus-based IRC suite (clients plugins)
chirp_20190104-1_amd64.deb Configuration tool for amateur radios
chise-db_0.3.0-2.1_all.deb CHISE db, the character information database
chkboot_1.2-3_all.deb detection of malicious changes for boot files
chkrootkit_0.52-3+b10_amd64.deb rootkit detector
chkservice_0.1-3_amd64.deb Tool for managing systemd units
chktex_1.7.6-2+b1_amd64.deb Finds typographic errors in LaTeX
chm2pdf_0.9.1-1.2_all.deb A Python script that converts CHM files into PDF files
chntpw_1.0-1.1_amd64.deb NT SAM password recovery utility
chocolate-common_3.0.0-4_all.deb dummy transitional package for chocolate-doom related packages
chocolate-doom_3.0.0-4_amd64.deb Doom engines closely-compatible with Vanilla Doom
choosewm_0.1.6-3+b2_amd64.deb fake x-session-manager allowing the user to choose a wm
choqok_1.6-2.1_amd64.deb KDE micro-blogging client
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