beast-mcmc-examples_1.8.4+dfsg.1-3_all.deb


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Description

beast-mcmc-examples - Bayesian MCMC phylogenetic inference - example data

Property Value
Distribution Debian Sid
Repository Debian Main amd64
Package name beast-mcmc-examples
Package version 1.8.4+dfsg.1
Package release 3
Package architecture all
Package type deb
Installed size 2.14 KB
Download size 1.90 MB
Official Mirror ftp.br.debian.org
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Package Version Architecture Repository
beast-mcmc-examples_1.8.4+dfsg.1-3_all.deb 1.8.4+dfsg.1 all Debian Main
beast-mcmc-examples - - -

Download

Type URL
Binary Package beast-mcmc-examples_1.8.4+dfsg.1-3_all.deb
Source Package beast-mcmc

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install beast-mcmc-examples deb package:
    # sudo apt-get install beast-mcmc-examples

Files

Path
/usr/share/doc/beast-mcmc-examples/changelog.Debian.gz
/usr/share/doc/beast-mcmc-examples/copyright
/usr/share/doc/beast-mcmc/examples/Benchmarks/benchmark1.xml.gz
/usr/share/doc/beast-mcmc/examples/Benchmarks/benchmark2.xml.gz
/usr/share/doc/beast-mcmc/examples/Benchmarks/old_benchmark.xml.gz
/usr/share/doc/beast-mcmc/examples/Data/Darwins-finches.nex.gz
/usr/share/doc/beast-mcmc/examples/Data/Dengue4.env.nex.gz
/usr/share/doc/beast-mcmc/examples/Data/Primates.nex.gz
/usr/share/doc/beast-mcmc/examples/Data/Primates_starting_tree.nex.gz
/usr/share/doc/beast-mcmc/examples/Data/Shankarappa.Patient9.nex.gz
/usr/share/doc/beast-mcmc/examples/Data/anolis.nex.gz
/usr/share/doc/beast-mcmc/examples/Data/microsatellite_data.txt
/usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/testECMcodonModel.xml.gz
/usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/testPCMcodonModel.xml.gz
/usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/freqs_k_unrest.csv
/usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/freqs_zs.csv
/usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/inirates.csv.gz
/usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/norates.csv.gz
/usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/rates_k_unrest.csv.gz
/usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/ecmdata/rates_zs.csv.gz
/usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/pcadata/freqs.csv
/usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/pcadata/means.csv.gz
/usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/pcadata/pcs.csv.gz
/usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/pcadata/scales.csv.gz
/usr/share/doc/beast-mcmc/examples/EmpiricalCodonModels/codon-data/pcadata/startfacs.csv.gz
/usr/share/doc/beast-mcmc/examples/MDS/US_cities.txt
/usr/share/doc/beast-mcmc/examples/MDS/US_cities.xml.gz
/usr/share/doc/beast-mcmc/examples/Phylogeography/H5N1_HA_discrete.xml.gz
/usr/share/doc/beast-mcmc/examples/Phylogeography/H5N1_HA_discrete_traits.xml.gz
/usr/share/doc/beast-mcmc/examples/Phylogeography/continuous/RacRABV_LogNRRW.xml.gz
/usr/share/doc/beast-mcmc/examples/Phylogeography/continuous/RacRABV_cauchyRRW.xml.gz
/usr/share/doc/beast-mcmc/examples/Phylogeography/continuous/RacRABV_gammaRRW.xml.gz
/usr/share/doc/beast-mcmc/examples/Phylogeography/continuous/RacRABV_homogeneous.xml.gz
/usr/share/doc/beast-mcmc/examples/VirusPractical/FPV/FPV.nex.gz
/usr/share/doc/beast-mcmc/examples/VirusPractical/FPV/FPV.xml.gz
/usr/share/doc/beast-mcmc/examples/VirusPractical/FPV/FPV1.xml.gz
/usr/share/doc/beast-mcmc/examples/VirusPractical/Flu/Flu.nex.gz
/usr/share/doc/beast-mcmc/examples/VirusPractical/Flu/Flu.xml.gz
/usr/share/doc/beast-mcmc/examples/VirusPractical/RSVA/RSVA.nex.gz
/usr/share/doc/beast-mcmc/examples/VirusPractical/RSVA/RSVA.xml.gz
/usr/share/doc/beast-mcmc/examples/VirusPractical/RSVA/RSVA1.xml.gz
/usr/share/doc/beast-mcmc/examples/calibrations/constrainedTaxaTest1.xml
/usr/share/doc/beast-mcmc/examples/calibrations/constrainedTaxaTest2.xml
/usr/share/doc/beast-mcmc/examples/calibrations/constrainedTaxaTest3.xml
/usr/share/doc/beast-mcmc/examples/calibrations/constrainedTaxaTest4.xml
/usr/share/doc/beast-mcmc/examples/calibrations/constrainedTaxaTest5.xml
/usr/share/doc/beast-mcmc/examples/calibrations/constrainedTaxaTest6.xml
/usr/share/doc/beast-mcmc/examples/calibrations/constrainedTaxaTest7.xml
/usr/share/doc/beast-mcmc/examples/calibrations/constrainedTaxaTest8.xml
/usr/share/doc/beast-mcmc/examples/calibrations/constrainedTaxaTest9.xml
/usr/share/doc/beast-mcmc/examples/calibrations/testCalibration.xml.gz
/usr/share/doc/beast-mcmc/examples/calibrations/test_5t_1c-pointSyntax.xml
/usr/share/doc/beast-mcmc/examples/calibrations/test_5t_1c_unif.xml
/usr/share/doc/beast-mcmc/examples/calibrations/test_5t_2c_e2.xml
/usr/share/doc/beast-mcmc/examples/calibrations/test_5t_2c_fp_unif.xml
/usr/share/doc/beast-mcmc/examples/calibrations/test_5t_5c_unif.xml
/usr/share/doc/beast-mcmc/examples/calibrations/test_7t_2c_4c_unif.xml
/usr/share/doc/beast-mcmc/examples/calibrations/test_7t_2c_7c_unif.xml
/usr/share/doc/beast-mcmc/examples/clockModels/testLocalClock.xml.gz
/usr/share/doc/beast-mcmc/examples/clockModels/testRandomLocalClock.xml.gz
/usr/share/doc/beast-mcmc/examples/clockModels/testStrictClock.xml.gz
/usr/share/doc/beast-mcmc/examples/clockModels/testStrictClockNoDate.xml.gz
/usr/share/doc/beast-mcmc/examples/clockModels/testStrictClockNoDate2.xml.gz
/usr/share/doc/beast-mcmc/examples/clockModels/testStrictClockTipDatesSampling.xml.gz
/usr/share/doc/beast-mcmc/examples/clockModels/testStrictClockTipTime.xml.gz
/usr/share/doc/beast-mcmc/examples/clockModels/testUCRelaxedClockContinuousQuantileLogNormal.xml.gz
/usr/share/doc/beast-mcmc/examples/clockModels/testUCRelaxedClockGamma.xml.gz
/usr/share/doc/beast-mcmc/examples/clockModels/testUCRelaxedClockLogNormal.xml.gz
/usr/share/doc/beast-mcmc/examples/continuousTraits/DarwinsFinches.nex.gz
/usr/share/doc/beast-mcmc/examples/continuousTraits/DarwinsFinchesTraits.txt
/usr/share/doc/beast-mcmc/examples/continuousTraits/racoon_rabies.xml.gz
/usr/share/doc/beast-mcmc/examples/continuousTraits/racoon_rabies_locations.txt
/usr/share/doc/beast-mcmc/examples/discreteTraits/H5N1_HA.nex.gz
/usr/share/doc/beast-mcmc/examples/discreteTraits/taxaLocations.txt
/usr/share/doc/beast-mcmc/examples/microsatellite/microsatellite.xml.gz
/usr/share/doc/beast-mcmc/examples/recombination/arg-ecoli.xml.gz
/usr/share/doc/beast-mcmc/examples/recombination/arg-lepto.xml.gz
/usr/share/doc/beast-mcmc/examples/recombination/arg-rokas.xml.gz
/usr/share/doc/beast-mcmc/examples/starBEAST/YuleMultiLoci.xml.gz
/usr/share/doc/beast-mcmc/examples/starBEAST/YuleSingleLocus.xml.gz
/usr/share/doc/beast-mcmc/examples/starBEAST/birthDeathMultiLoci.xml.gz
/usr/share/doc/beast-mcmc/examples/starBEAST/brithDeathSingleLocus.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testAddPatterns.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testAddPatterns2.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testAlignmentStatistics.xml
/usr/share/doc/beast-mcmc/examples/testXML/testAncestralReconstruction.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testAscertainment.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testAutocorrelatedRelaxedClock.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testBinaryDollo.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testCodonLikelihood.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testComparativeMethod.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testJointTipAges.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testLatentLiability.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testLewisMk.xml
/usr/share/doc/beast-mcmc/examples/testXML/testLikelihood.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testLocalClocks.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testLognormalPrior.xml
/usr/share/doc/beast-mcmc/examples/testXML/testMC3.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testMCMC.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testML.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testMSSD.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testMVN.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testMVOU.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testMarkovJumps.xml
/usr/share/doc/beast-mcmc/examples/testXML/testMissingIntegratedTraitLikelihood.xml
/usr/share/doc/beast-mcmc/examples/testXML/testMixedModel.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testMultiThreading.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testNormalModelEllipticalSliceSampler.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testNormalModelGibbs.xml
/usr/share/doc/beast-mcmc/examples/testXML/testPMD.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testPopTreeModel.xml
/usr/share/doc/beast-mcmc/examples/testXML/testPosteriorIBD.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testRestrictedAncestralReconstruction.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testSequenceSimulator.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testSimplePathSampling.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testStarTreeTest.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testStarTreeTest2.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testTipDatePrecision.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testTransmissionStatistic.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testTransposedMatrixParameter.xml
/usr/share/doc/beast-mcmc/examples/testXML/testTreePathSampling.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/testUniformizedMarkovJumps.xml
/usr/share/doc/beast-mcmc/examples/testXML/substModels/testSRD06CP12_3.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/substModels/testSiteModelAlpha.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePrior+clockModel/BayesianSkyline+unccorelatedExp.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePrior+clockModel/Yule+unccorelatedExp.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePrior+clockModel/birthDeath+unccorelatedLn.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePrior+clockModel/constant+uncorrelatedExp.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePrior+clockModel/expansionDoubling+strict.xml.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePrior+clockModel/exponentialDoubling+strict.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePrior+clockModel/extendedBayesianSkyline+uncorrelatedLn.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testBSP.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testBSP1.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testBSPNoClock.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testBirthDeathAsYule.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testBirthDeathModel_10taxa.xml
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testCataclysmCoalescent.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testCoalescent.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testCoalescentNoClock.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testCoalescentNoClock1.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testEBSP.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testExponentialGrowth.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testGMRFCoalescent.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testLinearBSP.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testPiecewiseExponential.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testYule.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testYuleCase3.xml
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testYuleModel.xml
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testYuleModel_10taxa.xml
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testYuleOneSite.xml.gz
/usr/share/doc/beast-mcmc/examples/testXML/treePriors/testYulePrior.xml.gz

Changelog

See beast-mcmc_1.8.4+dfsg.1-3_all.deb changelog.

See Also

Package Description
beast-mcmc_1.8.4+dfsg.1-3_all.deb Bayesian MCMC phylogenetic inference
beast2-mcmc-doc_2.5.1+dfsg-1_all.deb Bayesian MCMC phylogenetic inference - documentation
beast2-mcmc-examples_2.5.1+dfsg-1_all.deb Bayesian MCMC phylogenetic inference - example data
beast2-mcmc_2.5.1+dfsg-1_all.deb Bayesian MCMC phylogenetic inference
beav_1.40-18+b3_amd64.deb binary editor and viewer
bedops-doc_2.4.35+dfsg-1_all.deb high-performance genomic feature operations (documentation)
bedops_2.4.35+dfsg-1_amd64.deb high-performance genomic feature operations
bedtools-test_2.27.1+dfsg-2_all.deb test data for the bedtools package
bedtools_2.27.1+dfsg-2_amd64.deb suite of utilities for comparing genomic features
beef_1.0.2-3_amd64.deb flexible Brainfuck interpreter
beep_1.3-5_amd64.deb advanced PC-speaker beeper
beets-doc_1.4.7-2_all.deb music tagger and library organizer - documentation
beets_1.4.7-2_all.deb music tagger and library organizer
beignet-dev_1.3.2-4_amd64.deb OpenCL for Intel GPUs (development files and documentation)
beignet-opencl-icd_1.3.2-4_amd64.deb OpenCL library for Intel GPUs
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