bbmap_38.63+dfsg-1_all.deb


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Description

bbmap - short read aligner and other bioinformatic tools

Property Value
Distribution Debian Sid
Repository Debian Main amd64
Package filename bbmap_38.63+dfsg-1_all.deb
Package name bbmap
Package version 38.63+dfsg
Package release 1
Package architecture all
Package type deb
Category science
Homepage https://sourceforge.net/projects/bbmap/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 4.74 MB
Installed size 5.39 MB

Alternatives

Package Version Architecture Repository
bbmap_38.63+dfsg-1_all.deb 38.63+dfsg all Debian Main
bbmap - - -

Requires

Name Value
libmpj-java -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package bbmap_38.63+dfsg-1_all.deb
Source Package bbmap

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install bbmap deb package:
    # sudo apt-get install bbmap

Files

Path
/usr/bin/bbduk.sh
/usr/bin/bbmap.sh
/usr/bin/bbnorm.sh
/usr/bin/bloomfilter.sh
/usr/bin/dedupe.sh
/usr/bin/reformat.sh
/usr/share/bbmap/a_sample_mt.sh
/usr/share/bbmap/addadapters.sh
/usr/share/bbmap/analyzeaccession.sh
/usr/share/bbmap/analyzegenes.sh
/usr/share/bbmap/bbcms.sh
/usr/share/bbmap/bbcountunique.sh
/usr/share/bbmap/bbduk.sh
/usr/share/bbmap/bbest.sh
/usr/share/bbmap/bbfakereads.sh
/usr/share/bbmap/bbmap.sh
/usr/share/bbmap/bbmapskimmer.sh
/usr/share/bbmap/bbmask.sh
/usr/share/bbmap/bbmerge-auto.sh
/usr/share/bbmap/bbmerge.sh
/usr/share/bbmap/bbnorm.sh
/usr/share/bbmap/bbrealign.sh
/usr/share/bbmap/bbrename.sh
/usr/share/bbmap/bbsketch.sh
/usr/share/bbmap/bbsplit.sh
/usr/share/bbmap/bbsplitpairs.sh
/usr/share/bbmap/bbstats.sh
/usr/share/bbmap/bbversion.sh
/usr/share/bbmap/bbwrap.sh
/usr/share/bbmap/bloomfilter.sh
/usr/share/bbmap/calctruequality.sh
/usr/share/bbmap/callgenes.sh
/usr/share/bbmap/callpeaks.sh
/usr/share/bbmap/callvariants.sh
/usr/share/bbmap/callvariants2.sh
/usr/share/bbmap/clumpify.sh
/usr/share/bbmap/commonkmers.sh
/usr/share/bbmap/comparegff.sh
/usr/share/bbmap/comparesketch.sh
/usr/share/bbmap/comparevcf.sh
/usr/share/bbmap/consect.sh
/usr/share/bbmap/countbarcodes.sh
/usr/share/bbmap/countgc.sh
/usr/share/bbmap/countsharedlines.sh
/usr/share/bbmap/crossblock.sh
/usr/share/bbmap/crosscontaminate.sh
/usr/share/bbmap/cutgff.sh
/usr/share/bbmap/cutprimers.sh
/usr/share/bbmap/decontaminate.sh
/usr/share/bbmap/dedupe.sh
/usr/share/bbmap/dedupe2.sh
/usr/share/bbmap/dedupebymapping.sh
/usr/share/bbmap/demuxbyname.sh
/usr/share/bbmap/demuxbyname2.sh
/usr/share/bbmap/diskbench.sh
/usr/share/bbmap/estherfilter.sh
/usr/share/bbmap/explodetree.sh
/usr/share/bbmap/fetchproks.sh
/usr/share/bbmap/filterassemblysummary.sh
/usr/share/bbmap/filterbarcodes.sh
/usr/share/bbmap/filterbycoverage.sh
/usr/share/bbmap/filterbyname.sh
/usr/share/bbmap/filterbysequence.sh
/usr/share/bbmap/filterbytaxa.sh
/usr/share/bbmap/filterbytile.sh
/usr/share/bbmap/filterlines.sh
/usr/share/bbmap/filterqc.sh
/usr/share/bbmap/filtersam.sh
/usr/share/bbmap/filtersubs.sh
/usr/share/bbmap/filtervcf.sh
/usr/share/bbmap/fungalrelease.sh
/usr/share/bbmap/fuse.sh
/usr/share/bbmap/gbff2gff.sh
/usr/share/bbmap/getreads.sh
/usr/share/bbmap/gi2ancestors.sh
/usr/share/bbmap/gi2taxid.sh
/usr/share/bbmap/gitable.sh
/usr/share/bbmap/grademerge.sh
/usr/share/bbmap/gradesam.sh
/usr/share/bbmap/icecreamfinder.sh
/usr/share/bbmap/icecreamgrader.sh
/usr/share/bbmap/icecreammaker.sh
/usr/share/bbmap/idmatrix.sh
/usr/share/bbmap/idtree.sh
/usr/share/bbmap/invertkey.sh
/usr/share/bbmap/kapastats.sh
/usr/share/bbmap/kcompress.sh
/usr/share/bbmap/khist.sh
/usr/share/bbmap/kmercountexact.sh
/usr/share/bbmap/kmercountmulti.sh
/usr/share/bbmap/kmercoverage.sh
/usr/share/bbmap/kmerfilterset.sh
/usr/share/bbmap/kmerlimit.sh
/usr/share/bbmap/kmerlimit2.sh
/usr/share/bbmap/loadreads.sh
/usr/share/bbmap/loglog.sh
/usr/share/bbmap/makechimeras.sh
/usr/share/bbmap/makecontaminatedgenomes.sh
/usr/share/bbmap/makepolymers.sh
/usr/share/bbmap/mapPacBio.sh
/usr/share/bbmap/matrixtocolumns.sh
/usr/share/bbmap/mergeOTUs.sh
/usr/share/bbmap/mergebarcodes.sh
/usr/share/bbmap/mergepgm.sh
/usr/share/bbmap/mergesam.sh
/usr/share/bbmap/mergesketch.sh
/usr/share/bbmap/mergesorted.sh
/usr/share/bbmap/msa.sh
/usr/share/bbmap/mutate.sh
/usr/share/bbmap/muxbyname.sh
/usr/share/bbmap/partition.sh
/usr/share/bbmap/phylip2fasta.sh
/usr/share/bbmap/pileup.sh
/usr/share/bbmap/plotflowcell.sh
/usr/share/bbmap/plotgc.sh
/usr/share/bbmap/postfilter.sh
/usr/share/bbmap/printtime.sh
/usr/share/bbmap/processfrag.sh
/usr/share/bbmap/processhi-c.sh
/usr/share/bbmap/processspeed.sh
/usr/share/bbmap/randomgenome.sh
/usr/share/bbmap/randomreads.sh
/usr/share/bbmap/readlength.sh
/usr/share/bbmap/readqc.sh
/usr/share/bbmap/reducesilva.sh
/usr/share/bbmap/reformat.sh
/usr/share/bbmap/removebadbarcodes.sh
/usr/share/bbmap/removecatdogmousehuman.sh
/usr/share/bbmap/removehuman.sh
/usr/share/bbmap/removehuman2.sh
/usr/share/bbmap/removemicrobes.sh
/usr/share/bbmap/removesmartbell.sh
/usr/share/bbmap/rename.sh
/usr/share/bbmap/renameimg.sh
/usr/share/bbmap/repair.sh
/usr/share/bbmap/replaceheaders.sh
/usr/share/bbmap/representative.sh
/usr/share/bbmap/rqcfilter.sh
/usr/share/bbmap/rqcfilter2.sh
/usr/share/bbmap/samtoroc.sh
/usr/share/bbmap/seal.sh
/usr/share/bbmap/sendsketch.sh
/usr/share/bbmap/shred.sh
/usr/share/bbmap/shrinkaccession.sh
/usr/share/bbmap/shuffle.sh
/usr/share/bbmap/shuffle2.sh
/usr/share/bbmap/sketch.sh
/usr/share/bbmap/sketchblacklist.sh
/usr/share/bbmap/sortbyname.sh
/usr/share/bbmap/splitbytaxa.sh
/usr/share/bbmap/splitnextera.sh
/usr/share/bbmap/splitsam.sh
/usr/share/bbmap/splitsam4way.sh
/usr/share/bbmap/splitsam6way.sh
/usr/share/bbmap/stats.sh
/usr/share/bbmap/statswrapper.sh
/usr/share/bbmap/streamsam.sh
/usr/share/bbmap/subsketch.sh
/usr/share/bbmap/summarizecontam.sh
/usr/share/bbmap/summarizecrossblock.sh
/usr/share/bbmap/summarizemerge.sh
/usr/share/bbmap/summarizequast.sh
/usr/share/bbmap/summarizescafstats.sh
/usr/share/bbmap/summarizeseal.sh
/usr/share/bbmap/summarizesketch.sh
/usr/share/bbmap/synthmda.sh
/usr/share/bbmap/tadpipe.sh
/usr/share/bbmap/tadpole.sh
/usr/share/bbmap/tadwrapper.sh
/usr/share/bbmap/taxonomy.sh
/usr/share/bbmap/taxserver.sh
/usr/share/bbmap/taxsize.sh
/usr/share/bbmap/taxtree.sh
/usr/share/bbmap/testfilesystem.sh
/usr/share/bbmap/testformat.sh
/usr/share/bbmap/testformat2.sh
/usr/share/bbmap/tetramerfreq.sh
/usr/share/bbmap/textfile.sh
/usr/share/bbmap/translate6frames.sh
/usr/share/bbmap/unicode2ascii.sh
/usr/share/bbmap/unzip.sh
/usr/share/bbmap/vcf2gff.sh
/usr/share/bbmap/webcheck.sh
/usr/share/doc/bbmap/README.Debian
/usr/share/doc/bbmap/RestartingServers.txt
/usr/share/doc/bbmap/TableOfContents.txt.gz
/usr/share/doc/bbmap/ToolDescriptions.txt.gz
/usr/share/doc/bbmap/UsageGuide.txt.gz
/usr/share/doc/bbmap/changelog.Debian.gz
/usr/share/doc/bbmap/changelog.gz
/usr/share/doc/bbmap/citation.txt
/usr/share/doc/bbmap/copyright
/usr/share/doc/bbmap/readme.txt
/usr/share/doc/bbmap/readme_config.txt
/usr/share/doc/bbmap/readme_filetypes.txt
/usr/share/doc/bbmap/guides/A_SampleGuide.txt
/usr/share/doc/bbmap/guides/AddAdaptersGuide.txt
/usr/share/doc/bbmap/guides/BBDukGuide.txt.gz
/usr/share/doc/bbmap/guides/BBMapGuide.txt.gz
/usr/share/doc/bbmap/guides/BBMap_old_readme.txt.gz
/usr/share/doc/bbmap/guides/BBMaskGuide.txt
/usr/share/doc/bbmap/guides/BBMergeGuide.txt.gz
/usr/share/doc/bbmap/guides/BBNormGuide.txt.gz
/usr/share/doc/bbmap/guides/BBSketchGuide.txt.gz
/usr/share/doc/bbmap/guides/CalcUniquenessGuide.txt
/usr/share/doc/bbmap/guides/CallVariantsGuide.txt.gz
/usr/share/doc/bbmap/guides/ClumpifyGuide.txt
/usr/share/doc/bbmap/guides/DedupeGuide.txt.gz
/usr/share/doc/bbmap/guides/FilterByTileGuide.txt.gz
/usr/share/doc/bbmap/guides/PreprocessingGuide.txt
/usr/share/doc/bbmap/guides/ReformatGuide.txt.gz
/usr/share/doc/bbmap/guides/RepairGuide.txt
/usr/share/doc/bbmap/guides/SealGuide.txt.gz
/usr/share/doc/bbmap/guides/SplitNexteraGuide.txt
/usr/share/doc/bbmap/guides/StatsGuide.txt
/usr/share/doc/bbmap/guides/TadpoleGuide.txt.gz
/usr/share/doc/bbmap/guides/TaxonomyGuide.txt.gz
/usr/share/java/bbmap.jar
/usr/share/man/man1/bbduk.sh.1.gz
/usr/share/man/man1/bbmap.sh.1.gz
/usr/share/man/man1/bbnorm.sh.1.gz
/usr/share/man/man1/bloomfilter.sh.1.gz
/usr/share/man/man1/dedupe.sh.1.gz
/usr/share/man/man1/reformat.sh.1.gz

Changelog

2019-08-26 - Andreas Tille <tille@debian.org>
bbmap (38.63+dfsg-1) unstable; urgency=medium
* Fix override_sh_installman
Closes: #935783
* New upstream version
* debhelper-compat 12
* Standards-Version: 4.4.0
2019-03-27 - Andreas Tille <tille@debian.org>
bbmap (38.43+dfsg-1) experimental; urgency=medium
* Initial release (Closes: #925875)

See Also

Package Description
bbpager_0.4.7-5+b1_amd64.deb Pager for the blackbox and fluxbox window managers
bbqsql_1.1-4_all.deb SQL Injection Exploitation Tool
bbrun_1.6-7_amd64.deb tool for the blackbox/fluxbox window managers that runs commands
bbswitch-dkms_0.8-8_amd64.deb Interface for toggling the power on NVIDIA Optimus video cards
bbswitch-source_0.8-8_amd64.deb Interface for toggling the power on NVIDIA Optimus video cards
bbtime_0.1.5-15_amd64.deb Time tool for the blackbox/fluxbox window managers
bc_1.07.1-2+b2_amd64.deb GNU bc arbitrary precision calculator language
bcache-tools_1.0.8-3_amd64.deb bcache userspace tools
bcal_2.1+git20190806.6c8d325-1_amd64.deb Command-line utility for storage conversions and calculations
bcbio-doc_1.1.5-1_all.deb Documentation for RNAseq-workflows of bcbio(-nextgen)
bcbio_1.1.5-1_all.deb toolkit for analysing high-throughput sequencing data
bcc_0.16.17-3.3_amd64.deb 16-bit x86 C compiler
bcfg2-doc_1.4.0~pre2+git141-g6d40dace6358-2_all.deb Configuration management system documentation
bcfg2-server_1.4.0~pre2+git141-g6d40dace6358-2_all.deb Configuration management server
bcfg2-web_1.4.0~pre2+git141-g6d40dace6358-2_all.deb Configuration management web interface
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