jemboss_6.6.0+dfsg-6_all.deb


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Description

jemboss - graphical user interface to EMBOSS

Property Value
Distribution Debian 9 (Stretch)
Repository Debian Main i386
Package filename jemboss_6.6.0+dfsg-6_all.deb
Package name jemboss
Package version 6.6.0+dfsg
Package release 6
Package architecture all
Package type deb
Category science
Homepage http://emboss.sourceforge.net
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 3.62 MB
Installed size 4.09 MB
Jemboss is a Graphical User Interface (GUI) to EMBOSS, the European Molecular
Biology Open Software Suite. It is part of the EMBOSS distribution.

Alternatives

Package Version Architecture Repository
jemboss_6.6.0+dfsg-6_all.deb 6.6.0+dfsg all Debian Main
jemboss - - -

Requires

Name Value
default-jre -
emboss -
emboss-data -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package jemboss_6.6.0+dfsg-6_all.deb
Source Package emboss

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install jemboss deb package:
    # sudo apt-get install jemboss

Files

Path
/usr/bin/jemboss
/usr/bin/runJemboss.sh
/usr/share/EMBOSS/jemboss/README
/usr/share/EMBOSS/jemboss/readme.html
/usr/share/EMBOSS/jemboss/images/Backward_arrow_button.gif
/usr/share/EMBOSS/jemboss/images/Forward_arrow_button.gif
/usr/share/EMBOSS/jemboss/images/Go_button.gif
/usr/share/EMBOSS/jemboss/images/Information_button.gif
/usr/share/EMBOSS/jemboss/images/Jemboss_logo_greyback.gif
/usr/share/EMBOSS/jemboss/images/Jemboss_logo_large.gif
/usr/share/EMBOSS/jemboss/images/Jemboss_logo_small.gif
/usr/share/EMBOSS/jemboss/images/Job_manager_button.gif
/usr/share/EMBOSS/jemboss/images/Refresh_button.gif
/usr/share/EMBOSS/jemboss/images/Refresh_button2.gif
/usr/share/EMBOSS/jemboss/images/jay64.jpg
/usr/share/EMBOSS/jemboss/images/jemboss_icon.png
/usr/share/EMBOSS/jemboss/lib/README
/usr/share/EMBOSS/jemboss/lib/jakarta-regexp-1.2.jar
/usr/share/EMBOSS/jemboss/lib/jalviewApplet.jar
/usr/share/EMBOSS/jemboss/lib/jemboss.jar
/usr/share/EMBOSS/jemboss/lib/mail.jar
/usr/share/EMBOSS/jemboss/lib/axis/axis-ant.jar
/usr/share/EMBOSS/jemboss/lib/axis/axis.jar
/usr/share/EMBOSS/jemboss/lib/axis/commons-discovery.jar
/usr/share/EMBOSS/jemboss/lib/axis/commons-logging.jar
/usr/share/EMBOSS/jemboss/lib/axis/jaxrpc.jar
/usr/share/EMBOSS/jemboss/lib/axis/log4j-1.2.8.jar
/usr/share/EMBOSS/jemboss/lib/axis/saaj.jar
/usr/share/EMBOSS/jemboss/lib/axis/servlet.jar
/usr/share/EMBOSS/jemboss/lib/axis/wsdl4j.jar
/usr/share/EMBOSS/jemboss/resources/filemgr.html
/usr/share/EMBOSS/jemboss/resources/jemboss.properties
/usr/share/EMBOSS/jemboss/resources/readme.html
/usr/share/EMBOSS/jemboss/resources/readmeAlign.html
/usr/share/EMBOSS/jemboss/resources/readmeDNADraw.html
/usr/share/EMBOSS/jemboss/resources/results.html
/usr/share/EMBOSS/jemboss/resources/seqList.html
/usr/share/EMBOSS/jemboss/resources/version
/usr/share/EMBOSS/jemboss/utils/README
/usr/share/EMBOSS/jemboss/utils/install-jemboss-server.sh
/usr/share/EMBOSS/jemboss/utils/jws-launch-button.png
/usr/share/EMBOSS/jemboss/utils/keys.sh
/usr/share/EMBOSS/jemboss/utils/makeFileManagerJNLP.sh
/usr/share/EMBOSS/jemboss/utils/makeJNLP.sh
/usr/share/EMBOSS/jemboss/utils/template.html
/usr/share/applications/jemboss.desktop
/usr/share/doc/jemboss/ChangeLog.gz
/usr/share/doc/jemboss/changelog.Debian.gz
/usr/share/doc/jemboss/changelog.gz
/usr/share/doc/jemboss/copyright
/usr/share/menu/jemboss

Changelog

2016-12-03 - Andreas Tille <tille@debian.org>
emboss (6.6.0+dfsg-6) unstable; urgency=medium
* debhelper 10
* d/watch: version=4
* Build-Depends: default-libmysqlclient-dev
Closes: #845838
2016-08-12 - Andreas Tille <tille@debian.org>
emboss (6.6.0+dfsg-5) unstable; urgency=medium
* Make sure manpage links will not end up in archindep packages
Closes: #834013
2016-08-09 - Canberk Koç <canberkkoc@gmail.com>
emboss (6.6.0+dfsg-4) unstable; urgency=medium
[ Canberk Koç ]
* Team upload.
* Autopkgtest added
[ Andreas Tille ]
* hardening+=all
* Fix some minor spelling issues inside packaging
* Secure Vcs-Git
* Bumped Standards-Version
2015-12-01 - Andreas Tille <tille@debian.org>
emboss (6.6.0+dfsg-3) unstable; urgency=medium
* Make sure we will not delete documentation files from new upstream
version
* Enable build on hurd
Closes: #762673
* cme fix dpkg-control
* incorporate changes from biolinux (see below)
* Make sure data are really in th directory where they will be copied from
Closes: #806022
* Ignore false lintian positives about package-contains-timestamped-gzip
* Cleanup debian/copyright from not existing files and not DEP5 conform
issues
* d/watch: add version mangling
2015-04-08 - Tim Booth <tbooth@ceh.ac.uk>
emboss (6.6.0+dfsg-2biolinux1) trusty; urgency=medium
* Current package builds jemboss from source but then installs
the pre-built jemboss.jar from the tarball - not good!!
Add ant dep and ensure that jemboss.jar really builds
* Include image for icon and edit .desktop file
* Add /usr/bin/jemboss
* Clean ./jemboss/runJemboss.sh which is created on build
* Clean various other files that blocked debuild -S (but note
we are still using some convenience copies of JARs)
* Remove makeJar.csh, and thus remove jemboss dep on csh
* Remove activation.jar which does not seem to be used at all
2014-05-19 - Andreas Tille <tille@debian.org>
emboss (6.6.0+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* debian/copyright: Add Upstream-Contact to report bugs
[ Gert Wollny ]
* Add patch to pad Hershey_to_Unicode_table consistently (Closes: #748395)
[ Andreas Tille ]
* cme fix dpkg-control:
- drop very old library versions from conflicts / replaces list
* remove explicite quilt dependency which is not needed
* debian/copyright: Exclude invariant GFDL 1.1 files which are related to
quite outdated EMBOSS 2.5.0
* debian/emboss-doc.doc-base.emboss-admin: removed
* debian/patches/remove_non-free_doc.patch: Cleanup Makefile.am from non-free
docs
2013-09-09 - Andreas Tille <tille@debian.org>
emboss (6.6.0-1) unstable; urgency=low
[ Charles Plessy ]
ec024a3 Imported Upstream version 6.5.7
78ef855 Removed upstream patch (for version 6.4.0).
2f66060 Clarified the license of the packaging.
[ Andreas Tille ]
* Imported Upstream version 6.6.0 (+adapt quilt patches)
Closes: #558852 (at least the regexp
dpkg-shlibdeps: warning: symbol.*found in none of the libraries
does not appear in the build log any more - feel free to reopen
with more info)
* Clarified copyright and licenses for:
- emboss/data/OBO/chebi.obo [b60238c]
- emboss/data/OBO/gene_ontology*.obo [dc91819]
- emboss/data/OBO/software.obo [3c8b4bf]
- emboss/data/OBO/*.obo [8c34d40]
- emboss/data/OBO/pathway.obo [1b3bbcf][1ff8ab9]
- emboss/data/OBO/eco.obo [95aa795]
- emboss/data/OBO/ro.obo [2865596]
* debian/control:
- Standards-Version: 3.9.4 (no changes needed)
- Provide real package evince in addition to virtual package pdf-viewer
* debian/rules:
- Remove some remainings from CVS from emboss-test package
* debian/{jemboss.desktop,jemboss.menu}:
- runJemboss.sh is now POSIX shell instead of csh
* debian/source/format: 3.0 (quilt)
* debian/patches/bashism.patch: Avoid bashism
Closes: #690651
2012-08-10 - Andreas Tille <tille@debian.org>
emboss (6.4.0-4) unstable; urgency=low
* use autoreconf to enable latest changes

See Also

Package Description
jenkins-debian-glue-buildenv_0.18.2.1_all.deb Jenkins Debian glue scripts - dependency package
jenkins-debian-glue_0.18.2.1_all.deb Jenkins Debian glue scripts
jenkins-job-builder-doc_1.6.1-1_all.deb Configure Jenkins using YAML files - doc
jenkins-job-builder_1.6.1-1_all.deb Configure Jenkins using YAML files - metapackage
jesred_1.2pl1-22+b1_i386.deb Redirector for the Squid proxy
jester_1.0-12_i386.deb board game similar to Othello
jetring_0.25_all.deb gpg keyring maintenance using changesets
jets3t_0.8.1+dfsg-3_all.deb graphical and command-line tools for Amazon S3 and CloudFront
jetty9_9.2.21-1+deb9u1_all.deb Java servlet engine and webserver
jeuclid-cli_3.1.9-3_all.deb Complete MathML rendering solution (command line tools)
jeuclid-mathviewer_3.1.9-3_all.deb Complete MathML rendering solution (Swing MathViewer)
jflex_1.6.1-2_all.deb lexical analyzer generator for Java
jfractionlab_0.91-3_all.deb Educative program to practice fractions
jfsutils_1.1.15-3_i386.deb utilities for managing the JFS filesystem
jftp_1.60+dfsg-2_all.deb Java GUI client for FTP, SMB, SFTP and NFS
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