fastqtl_2.184+dfsg-5_i386.deb


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Description

fastqtl - Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes

Property Value
Distribution Debian 9 (Stretch)
Repository Debian Main i386
Package filename fastqtl_2.184+dfsg-5_i386.deb
Package name fastqtl
Package version 2.184+dfsg
Package release 5
Package architecture i386
Package type deb
Category field::biology field::biology:bioinformatics interface::commandline role::program science use::analysing
Homepage http://fastqtl.sourceforge.net/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 196.15 KB
Installed size 631.00 KB
The goal of FastQTL is to identify single-nucleotide polymorphisms (SNPs)
which are significantly associated with various molecular phenotypes
(i.e. expression of known genes, cytosine methylation levels, etc).
It performs scans for all possible phenotype-variant pairs in cis
(i.e. variants located within a specific window around a phenotype).
FastQTL implements a new permutation scheme (Beta approximation) to accurately
and rapidly correct for multiple-testing at both the genotype and phenotype
levels.

Alternatives

Package Version Architecture Repository
fastqtl_2.184+dfsg-5_amd64.deb 2.184+dfsg amd64 Debian Main
fastqtl - - -

Requires

Name Value
libblas.so.3 -
libblas3 -
libboost-iostreams1.62.0 -
libboost-program-options1.62.0 -
libc6 >= 2.4
libgcc1 >= 1:3.0
libgsl2 -
libhts1 >= 1.0
libstdc++6 >= 5.2
r-mathlib -
zlib1g >= 1:1.1.4

Download

Type URL
Mirror ftp.br.debian.org
Binary Package fastqtl_2.184+dfsg-5_i386.deb
Source Package fastqtl

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install fastqtl deb package:
    # sudo apt-get install fastqtl

Files

Path
/usr/bin/fastQTL
/usr/share/doc/fastqtl/changelog.Debian.gz
/usr/share/doc/fastqtl/copyright
/usr/share/lintian/overrides/fastqtl
/usr/share/man/man1/fastQTL.1.gz

Changelog

2016-12-16 - Andreas Tille <tille@debian.org>
fastqtl (2.184+dfsg-5) unstable; urgency=medium
* Team upload.
* Fix patch for reproducible builds (Thanks to Reiner Herrmann
<reiner@reiner-h.de>)
Closes: #848292
* debhelper 10
* d/watch: version=4
2016-08-31 - Dylan Aïssi <bob.dybian@gmail.com>
fastqtl (2.184+dfsg-4) unstable; urgency=low
* Add a patch to fix reproducible builds (stable order for inputs).
2016-06-12 - Dylan Aïssi <bob.dybian@gmail.com>
fastqtl (2.184+dfsg-3) unstable; urgency=low
* Remove the manpage from fastqtl-doc. (Closes: #826885)
2016-06-02 - Dylan Aïssi <bob.dybian@gmail.com>
fastqtl (2.184+dfsg-2) unstable; urgency=low
[ Dylan Aïssi ]
* Switch Build-Depends from libgsl0-dev to libgsl-dev.
* Fix reproducible builds. (Closes: #826209)
[ Andreas Tille ]
* Set all hardening options
2016-04-30 - Dylan Aïssi <bob.dybian@gmail.com>
fastqtl (2.184+dfsg-1) unstable; urgency=low
* Initial release. (Closes: #823115)

See Also

Package Description
fasttree_2.1.9-1_i386.deb phylogenetic trees from alignments of nucleotide or protein sequences
fastx-toolkit_0.0.14-3_i386.deb FASTQ/A short nucleotide reads pre-processing tools
fatattr_1.0.1-13_i386.deb Utility to control attributes on a FAT filesystem
fatcat_1.0.5-1_i386.deb FAT filesystem explore, extract, repair, and forensic tool
fatrace_0.12-1+b1_i386.deb report system wide file access events
fatresize_1.0.2-9_i386.deb FAT16/FAT32 filesystem resizer
fatsort_1.3.365-1+b1_i386.deb utility for sorting FAT directory structures
faucc_20160511-1+b1_i386.deb C compiler generating Intel code for 16bit/32bit CPUs
fauhdlc_20130704-1.1_i386.deb experimental VHDL compiler and interpreter
faust-common_0.9.95~repack1-2_all.deb functional programming language for realtime audio applications - common files
faust_0.9.95~repack1-2_i386.deb functional programming language for realtime audio applications
faustworks_0.5~repack0-3_i386.deb IDE for Faust dsp programming language
fb-music-high_0.1.2+nmu1_all.deb High quality, large music files for Frozen-Bubble
fbautostart_2.718281828-1+b2_i386.deb XDG compliant autostarting app for Fluxbox
fbb_7.07-2+b1_i386.deb Packet radio mailbox and utilities
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