fastlink_4.1P-fix100+dfsg-1+b1_i386.deb


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Description

fastlink - faster version of pedigree programs of Linkage

Property Value
Distribution Debian 9 (Stretch)
Repository Debian Main i386
Package filename fastlink_4.1P-fix100+dfsg-1+b1_i386.deb
Package name fastlink
Package version 4.1P
Package release fix100+dfsg-1+b1
Package architecture i386
Package type deb
Category field::biology field::biology:bioinformatics implemented-in::c interface::commandline role::program science scope::utility use::analysing use::comparing works-with-format::TODO works-with::TODO
Homepage http://www.ncbi.nlm.nih.gov/CBBResearch/Schaffer/fastlink.html
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 246.04 KB
Installed size 870.00 KB
Genetic linkage analysis is a statistical technique used to map
genes and find the approximate location of disease genes. There
was a standard software package for genetic linkage called
LINKAGE. FASTLINK is a significantly modified and improved
version of the main programs of LINKAGE that runs much faster
sequentially, can run in parallel, allows the user to recover
gracefully from a computer crash, and provides abundant new
documentation. FASTLINK has been used in over 1000 published
genetic linkage studies.
This package contains the following programs:
ilink:    GEMINI optimization procedure to find a locally
optimal value of the theta vector of recombination
fractions
linkmap:  calculates location scores of one locus against a
fixed map of other loci
lodscore: compares likelihoods at locally optimal theta
mlink:    calculates lod scores and risk with two of more loci
unknown:  identify possible genotypes for unknowns

Alternatives

Package Version Architecture Repository
fastlink_4.1P-fix100+dfsg-1+b1_amd64.deb 4.1P amd64 Debian Main
fastlink - - -

Requires

Name Value
libc6 >= 2.7

Download

Type URL
Mirror ftp.br.debian.org
Binary Package fastlink_4.1P-fix100+dfsg-1+b1_i386.deb
Source Package fastlink

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install fastlink deb package:
    # sudo apt-get install fastlink

Files

Path
/usr/bin/ilink
/usr/bin/linkmap
/usr/bin/lodscore
/usr/bin/mlink
/usr/bin/unknown
/usr/share/doc/fastlink/README.Debian
/usr/share/doc/fastlink/README.ILINK.gz
/usr/share/doc/fastlink/README.Linux
/usr/share/doc/fastlink/README.TreadMarks.gz
/usr/share/doc/fastlink/README.allele.gz
/usr/share/doc/fastlink/README.bugreport
/usr/share/doc/fastlink/README.checkpoint.gz
/usr/share/doc/fastlink/README.constants.gz
/usr/share/doc/fastlink/README.gz
/usr/share/doc/fastlink/README.mapfun.gz
/usr/share/doc/fastlink/README.memory
/usr/share/doc/fastlink/README.p4.gz
/usr/share/doc/fastlink/README.parallel.gz
/usr/share/doc/fastlink/README.scaling
/usr/share/doc/fastlink/README.time
/usr/share/doc/fastlink/README.trouble.gz
/usr/share/doc/fastlink/README.unknown
/usr/share/doc/fastlink/README.updates.gz
/usr/share/doc/fastlink/changelog.Debian.gz
/usr/share/doc/fastlink/changelog.Debian.i386.gz
/usr/share/doc/fastlink/copyright
/usr/share/doc/fastlink/fastlink.html
/usr/share/man/man1/ilink.1.gz
/usr/share/man/man1/linkmap.1.gz
/usr/share/man/man1/lodscore.1.gz
/usr/share/man/man1/mlink.1.gz
/usr/share/man/man1/unknown.1.gz
/usr/share/menu/fastlink

Changelog

2016-01-10 - Andreas Tille <tille@debian.org>
fastlink (4.1P-fix100+dfsg-1) unstable; urgency=low
* New upstream patch level
* debian/upstream/metadata
* debhelper 9
* cme fix dpkg-control
* d/rules: short dh
* DEP5
* Moved packaging from SVN to Git
* Provide fake d/watch to document that upstream has no versioned tarball
* Propagate hardening flags
2011-12-19 - Andreas Tille <tille@debian.org>
fastlink (4.1P-fix95-3) unstable; urgency=low
* Replaced debian/*.desktop by debian/menu to make sure users of
modern desktop systems using freedesktop.org standards will not
be confused by a missing graphical interface
Closes: #639998
* debian/control:
- Standards-Version: 3.9.2 (no changes needed)
- Fixed Vcs fields
- Dropped article in short description
* Debhelper 8 (control+compat)
2011-01-14 - Andreas Tille <tille@debian.org>
fastlink (4.1P-fix95-2) unstable; urgency=low
* debian/copyright: Fixed source download location
* debian/control:
- Standards-Version: 3.9.1
- Fix spelling of Debian Med
- debhelper (>= 7)
- Depends: ${misc:Depends}
* debian/compat: 7
* debian/watch: use GZIP="--best --no-name" to make sure the
resulting tarball will be identically
* debian/source/format: 3.0 (quilt)
* debian/rules: remove dh_desktop call
2008-12-09 - Andreas Tille <tille@debian.org>
fastlink (4.1P-fix95-1) unstable; urgency=low
* New upstream bugfix release
* debian/control: Better description
* Standards-Version: 3.8.0 (no changes needed)
* Removed explicite versioning from cdbs and debhelper
* Machine readable copyright files
* debian/loadscore.1: s?\.5?1/2? because man treated .5 as control
* gcc3.3 patch is not needd any more - so neither the quilt
dependency is needed
2008-07-06 - Charles Plessy <plessy@debian.org>
fastlink (4.1P-fix94b-2) unstable; urgency=low
* Changed the doc-base section according to the new policy.
* Added myself to the `Uploaders' field in debian/control.
2008-02-18 - Andreas Tille <tille@debian.org>
fastlink (4.1P-fix94b-1) unstable; urgency=low
* New upstream patch
* Don't autogenerate debian/control, remove debian/control.in
* Build-Depends: quilt
* Standards-Version: 3.7.3 (No changes needed)
* debian/control: XCBS-URL -> Homepage
* Removed XB-Tag (isn't used) and Homepage from long description
* Removed [Biology] from short description
* Group maintenance
- Maintainer: Debian-Med Packaging Team
<debian-med-packaging@lists.alioth.debian.org>
- DM-Upload-Allowed: yes
- Uploaders: Andreas Tille <tille@debian.org>
- Vcs-Browser, Vcs-Svn
* Doc package to section doc
2006-09-09 - Andreas Tille <tille@debian.org>
fastlink (4.1P-fix92-1) unstable; urgency=low
* New upstream fix package
* Standards-Version: 3.7.2 (no changes necessary)
* Switched to cdbs
* Setting DebTags
* Added desktop files
2004-12-01 - Andreas Tille <tille@debian.org>
fastlink (4.1P-fix91-1) unstable; urgency=low
* New bugfix release
* removed some files which are very specific for running fastlink on
AIX, VMS and IRIX from source package which had to be repackaged anyway.
* Standards-Version: 3.6.1.1
2003-06-02 - Andreas Tille <tille@debian.org>
fastlink (4.1P-fix88-3) unstable; urgency=low
* Fixed maintainer address in debian/control
closes: #195322
* Patched 4.1P/src/{commondefs,unknown}.h to replace varargs.h by stdarg.h
Ported functions in iostuff.c to get rid of va_* stuff.  Many thanks to
Colin Watson <cjwatson@debian.org> for his patches.
Replaced <sys/time.h> by <time.h>
These points fix FTBFS with gcc-3.3.
closes: #194913

See Also

Package Description
fastml_3.1-3_i386.deb maximum likelihood ancestral amino-acid sequence reconstruction
fastqc_0.11.5+dfsg-6_all.deb quality control for high throughput sequence data
fastqtl-doc_2.184+dfsg-5_all.deb QTL mapper in cis for molecular phenotypes - documentation
fastqtl_2.184+dfsg-5_i386.deb Quantitative Trait Loci (QTL) mapper in cis for molecular phenotypes
fasttree_2.1.9-1_i386.deb phylogenetic trees from alignments of nucleotide or protein sequences
fastx-toolkit_0.0.14-3_i386.deb FASTQ/A short nucleotide reads pre-processing tools
fatattr_1.0.1-13_i386.deb Utility to control attributes on a FAT filesystem
fatcat_1.0.5-1_i386.deb FAT filesystem explore, extract, repair, and forensic tool
fatrace_0.12-1+b1_i386.deb report system wide file access events
fatresize_1.0.2-9_i386.deb FAT16/FAT32 filesystem resizer
fatsort_1.3.365-1+b1_i386.deb utility for sorting FAT directory structures
faucc_20160511-1+b1_i386.deb C compiler generating Intel code for 16bit/32bit CPUs
fauhdlc_20130704-1.1_i386.deb experimental VHDL compiler and interpreter
faust-common_0.9.95~repack1-2_all.deb functional programming language for realtime audio applications - common files
faust_0.9.95~repack1-2_i386.deb functional programming language for realtime audio applications
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