emboss-explorer_2.2.0-8_all.deb


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Description

emboss-explorer - web-based GUI to EMBOSS

Property Value
Distribution Debian 9 (Stretch)
Repository Debian Main i386
Package filename emboss-explorer_2.2.0-8_all.deb
Package name emboss-explorer
Package version 2.2.0
Package release 8
Package architecture all
Package type deb
Category biology::emboss field::biology field::biology:bioinformatics implemented-in::perl interface::web role::plugin science suite::TODO web::application web::cgi
Homepage http://embossgui.sourceforge.net/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 40.59 KB
Installed size 244.00 KB
EMBOSS explorer is a web-based graphical user interface
to the EMBOSS suite of bioinformatics tools. It is written
in Perl.
If you use the Apache HTTP server, you will at most have to restart it before
using EMBOSS explorer. For other web servers, you will have to do the
configuration by yourself.

Alternatives

Package Version Architecture Repository
emboss-explorer_2.2.0-8_all.deb 2.2.0 all Debian Main
emboss-explorer - - -

Requires

Name Value
emboss -
emboss-data -
libemboss-acd-perl -
libmailtools-perl -
perl -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package emboss-explorer_2.2.0-8_all.deb
Source Package emboss-explorer

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install emboss-explorer deb package:
    # sudo apt-get install emboss-explorer

Files

Path
/etc/apache2/conf-available/emboss-explorer.apache2.conf
/etc/cron.d/emboss-explorer
/etc/emboss-explorer/apache2.conf
/etc/emboss-explorer/emboss-explorer.conf
/etc/emboss-explorer/style/cbr.css
/etc/emboss-explorer/style/classic.css
/etc/emboss-explorer/style/emboss.css
/usr/bin/acdcheck
/usr/bin/mkstatic
/usr/lib/cgi-bin/emboss
/usr/share/applications/emboss-explorer.desktop
/usr/share/doc/emboss-explorer/README
/usr/share/doc/emboss-explorer/README.Debian
/usr/share/doc/emboss-explorer/changelog.Debian.gz
/usr/share/doc/emboss-explorer/copyright
/usr/share/doc/emboss-explorer/html
/usr/share/doc/emboss-explorer/examples/ACD.t
/usr/share/emboss-explorer/html/index.html
/usr/share/emboss-explorer/html/output
/usr/share/emboss-explorer/html/style
/usr/share/emboss-explorer/images/cbr-corner-ne.gif
/usr/share/emboss-explorer/images/cbr-corner-sw.gif
/usr/share/emboss-explorer/images/running.gif
/usr/share/lintian/overrides/emboss-explorer
/usr/share/man/man1/acdcheck.1p.gz
/usr/share/man/man1/mkstatic.1p.gz
/usr/share/man/man3/EMBOSS::GUI.3pm.gz
/usr/share/man/man3/EMBOSS::GUI::Conf.3pm.gz
/usr/share/man/man3/EMBOSS::GUI::XHTML.3pm.gz
/usr/share/menu/emboss-explorer
/usr/share/perl5/EMBOSS/GUI.pm
/usr/share/perl5/EMBOSS/GUI/Conf.pm
/usr/share/perl5/EMBOSS/GUI/XHTML.pm

Changelog

2013-09-15 - Charles Plessy <plessy@debian.org>
emboss-explorer (2.2.0-8) unstable; urgency=low
[ David Paleino ]
* Removed myself from Uploaders
[ Charles Plessy ]
* Converted patches from dpatch to quilt format.
* Converted the source package to dpkg source format 3.0 (quilt).
* Added a DEP 3 header to the patches.
* Removed debian/emboss-explorer.preinst, useless after Lenny.
* Conforms with Policy 3.9.4 (debian/control, no other changes needed).
* Use canonical VCS URLs in debian/control. 
* Updated debian/copyright to latest machine-readable format.
* Switch to Debhelpers compatibility level 9 (debian/compat, debian/control).
* Convert to Debhelper's tiny mode (debian/rules, debian/docs).
* Removed obsolete DM-Upload-Allowed field.
* Normalised debian/control with config-model-edit.
* Removed restriction on EMBOSS version, satisified even in oldstable.
* Verbose build logs (debian/rules).
* Added Debhelper’s misc:Depends substitution variable.
* Use dh_apache2 (Closes: #669738).
- Build-depend on apache2-dev for dh_apache2.
- Invoke dh_apache2 through dh.
- Updated Apache configuration file for 2.4.
- Updated debian/emboss-explorer.links for new name of configuration file.
- Override ‘apache2-deprecated-auth-config’ warning (would conflict
with another file).
- Delete obsolete postinst and postrm files.
- Recommend apache2 or httpd through misc:Recommends.
* Added keywords to the desktop entry.
* Correct path for moving ACD.pm and its manual page.
* Apply patch from upstream tracker to use emboss-explorer with EMBOSS 6.4
(Closes: #722982 LP:#1083426).
* Correct the alias to the EMBOSS documentation.  Closes: #485735.
2008-12-07 - Charles Plessy <plessy@debian.org>
emboss-explorer (2.2.0-7) unstable; urgency=low
* debian/emboss-explorer.postinst: reloads apache.
* debian/menu, debian/emboss-explorer.desktop,
debian/rules, debian/emboss-explorer.install: adding menu entries starting
a browser on http://localhost/emboss-explorer.
* debian/README.source, debian/control: added instructions for patching
and updated Standards-Version.
* debian/compat, debian/control: using Debhelper 7.
2008-07-05 - Charles Plessy <plessy@debian.org>
emboss-explorer (2.2.0-6) unstable; urgency=low
[ Charles Plessy ]
* Relicensed the packaging work to "Same as EMBOSS explorer".
* debian/patches:
- Documented 01-fix_examples.dpatch.
- Documented and forwarded 02-fix_Conf.pm.dpatch and
05-build-manpages.dpatch.
- Suppressed 04-fix_install.dpatch. Its role is taken by debian/rules and
debian/index.html.
* debian/rules:
- refreshed using dh-make-perl version 0.45;
- tests disable because of upstream bug 1994385;
- sets the owner of the emboss output directory as `www-data';
- touches the makefile to avoid timestamp artefacts due to the patching of
Makefile.PL (Thanks to Damyan and Gregor for the hint!).
* Package made compatible with FHS by not using /var/www.
- HTML files moved to `/usr/emboss-explorer/html'.
- Cascade stylesheets moved to `/etc/emboss-explorer/style'
(they are intended to be modifiable).
- Temporary files moved to `/var/lib/emboss-explorer'
- /etc/emboss-explorer/apache.conf allows apache2 to access the files in
the /user/share/emboss-explorer directory, as well as the EMBOSS
documentation in /usr/share/doc/emboss-explorer/ (Closes: #485735).
* debian/emboss-explorer.manpages, debian/acdcheck.1*, debian/mkstatic.1*
suppressed to use Upstream's manpages.
* debian/emboss-explorer.postrm removes the temporary files when the package
is purged.
* debian/emboss-explorer.preinst moves the emboss-explorer.conf in its new
place.
[ David Paleino ]
* debian/control:
- dropped dependency on libcgi-perl (Closes: #485009)
- updated Charles' email :)
* debian/copyright updated

See Also

Package Description
emboss-lib_6.6.0+dfsg-6_i386.deb EMBOSS Libraries
emboss-test_6.6.0+dfsg-6_all.deb test files for the EMBOSS package
emboss_6.6.0+dfsg-6_i386.deb European molecular biology open software suite
emdebian-archive-keyring_2.2_all.deb GnuPG archive keys for the emdebian repository
emelfm2-svg-icons_20100219-3_all.deb icon SVG files from emelfm2 project
emma_0.6-5_all.deb extendable MySQL managing assistant
emms_4.2-1.1_i386.deb Emacs MultiMedia System
empathy-common_3.12.12-4_all.deb GNOME multi-protocol chat and call client (common files)
empathy_3.12.12-4_i386.deb GNOME multi-protocol chat and call client
empire-hub_1.0.2.2_i386.deb Empire protocol multiplexer
empire-lafe_1.1-1+b3_i386.deb Fast line-mode Empire client
empire_1.14-1+b1_i386.deb war game of the century
empty-expect_0.6.20b-1+b1_i386.deb Run processes and applications under pseudo-terminal
emu8051_1.1.1-1+b1_i386.deb Emulator and simulator for 8051 microcontrollers
enamdict_2016.12.06-1_all.deb Dictionary of Japanese proper names
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