embassy-domsearch_0.1.660-1_i386.deb


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Description

embassy-domsearch - Extra EMBOSS commands to search for protein domains

Property Value
Distribution Debian 9 (Stretch)
Repository Debian Main i386
Package filename embassy-domsearch_0.1.660-1_i386.deb
Package name embassy-domsearch
Package version 0.1.660
Package release 1
Package architecture i386
Package type deb
Category field::biology field::biology:bioinformatics implemented-in::c interface::commandline role::program science scope::utility use::analysing
Homepage http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 59.47 KB
Installed size 566.00 KB
The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP
for their protein domain research. They are included as an EMBASSY package as
a work in progress.
Applications in this DOMSEARCH release are seqfraggle (removes fragment
sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch
(generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove
ambiguous classified sequences from DHF files) and seqwords (Generates DHF
files from keyword search of UniProt).

Alternatives

Package Version Architecture Repository
embassy-domsearch_0.1.660-1_amd64.deb 0.1.660 amd64 Debian Main
embassy-domsearch - - -

Requires

Name Value
emboss-lib >= 6.6.0-1~
emboss-lib << 6.6.1~
libc6 >= 2.4
libx11-6 -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package embassy-domsearch_0.1.660-1_i386.deb
Source Package embassy-domsearch

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install embassy-domsearch deb package:
    # sudo apt-get install embassy-domsearch

Files

Path
/usr/bin/seqfraggle
/usr/bin/seqnr
/usr/bin/seqsearch
/usr/bin/seqsort
/usr/bin/seqwords
/usr/share/EMBOSS/acd/seqfraggle.acd
/usr/share/EMBOSS/acd/seqnr.acd
/usr/share/EMBOSS/acd/seqsearch.acd
/usr/share/EMBOSS/acd/seqsort.acd
/usr/share/EMBOSS/acd/seqwords.acd
/usr/share/EMBOSS/doc/html/embassy/domsearch/index.html
/usr/share/EMBOSS/doc/html/embassy/domsearch/seqfraggle.html
/usr/share/EMBOSS/doc/html/embassy/domsearch/seqnr.html
/usr/share/EMBOSS/doc/html/embassy/domsearch/seqsearch.html
/usr/share/EMBOSS/doc/html/embassy/domsearch/seqsort.html
/usr/share/EMBOSS/doc/html/embassy/domsearch/seqwords.html
/usr/share/EMBOSS/doc/programs/text/seqfraggle.txt
/usr/share/EMBOSS/doc/programs/text/seqnr.txt
/usr/share/EMBOSS/doc/programs/text/seqsearch.txt
/usr/share/EMBOSS/doc/programs/text/seqsort.txt
/usr/share/EMBOSS/doc/programs/text/seqwords.txt
/usr/share/doc/embassy-domsearch/changelog.Debian.gz
/usr/share/doc/embassy-domsearch/changelog.gz
/usr/share/doc/embassy-domsearch/copyright
/usr/share/man/man1/seqfraggle.1e.gz
/usr/share/man/man1/seqnr.1e.gz
/usr/share/man/man1/seqsearch.1e.gz
/usr/share/man/man1/seqsort.1e.gz
/usr/share/man/man1/seqwords.1e.gz

Changelog

2013-09-12 - Andreas Tille <tille@debian.org>
embassy-domsearch (1:0.1.660-1) unstable; urgency=medium
* New upstream version (its actually no new code but only the version
number has changed)
* cme fix dpkg-control
* debhelper 10
* d/watch: version=4
* remove unused lintian override
* hardening=+all
* Build-Depends: default-libmysqlclient-dev
Closes: #845837
-- Andreas Tille <tille@debian.org>  Fri, 02 Dec 2016 15:03:12 +0100
embassy-domsearch (1:0.1.650-1) unstable; urgency=low
* New upstream version
* debian/control:
- cme fix dpkg-control
- Bumped versioned depends from emboss-lib
- anonscm in VCS fields
2012-06-22 - Andreas Tille <tille@debian.org>
embassy-domsearch (1:0.1.0+20110714-1) unstable; urgency=low
* New upstream version
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- debhelper version 9
- Adapted versioned (build-)depends to latest emboss version
* added debian/compat: 9
* debian/source/format: 3.0 (quilt)
* debian/rules: short dh
* debian/copyright: DEP5 fixes
2011-05-11 - Charles Plessy <plessy@debian.org>
embassy-domsearch (0.1.0++20100721-3) unstable; urgency=low
* Corrected version mangling in debian/watch.
* Set RPATH with “-Wl,--rpath” as GCC 4.6 does not accept “-R” anymore.
(debian/rules) Closes: #625193, LP: #771001.
* Incremented Standards-Version to reflect conformance with Policy 3.9.2
(debian/control, no changes needed).
* Updated debian/embassy-domsearch.lintian-overrides for lintian 2.5.
* debian/copyright validated with config-edit.
2010-09-23 - Charles Plessy <plessy@debian.org>
embassy-domsearch (0.1.0++20100721-2) unstable; urgency=low
* Built on emboss-lib 6.3.1-6, pre-emptively depending on versions
lower than 6.3.2, because backwards compatibility is sometimes
broken (debian/control, debian/rules).
* Set an RPATH to /usr/lib/emboss/lib for using EMBOSS private
libraries (debian/rules, debian/embassy-domsearch.lintian-overrides).
* Refreshed debian/copyright to test the latest DEP-5 format.
2010-08-11 - Charles Plessy <plessy@debian.org>
embassy-domsearch (0.1.0++20100721-1) unstable; urgency=low
* New upstream release in which the version number was unchanged.
* Build-Depends on emboss 6.3.1 (debian/control, debian/rules,
closes: #591121).
* Build-Depends on libmysqlclient-dev and libpq-dev until emboss is fixed.
* Pass -Wl,--as-needed to avoid unneeded binary dependencies (debian/rules).
* Incremented Standards-Version to reflect conformance with Policy 3.9.1
(debian/control, no changes needed).
2010-06-26 - Charles Plessy <plessy@debian.org>
embassy-domsearch (0.1.0++20100115-1) unstable; urgency=low
* New upstream release in which the version number was unchanged.
(I chose a strange version number to avoid an epoch because of
the typo in the previous number).
* debian/control:
- Build against EMBOSS 6.2 (Closes: #587119).
- Checked conformance with Policy 3.8.4 (no changes needed).
* debian/*manpages* refreshed.
2009-07-20 - Charles Plessy <plessy@debian.org>
embassy-domsearch (0.1.0+20980715-1) unstable; urgency=low
* Initial release (Closes: #537204).

See Also

Package Description
ember-media_0.7.2.1-1_all.deb 3D client framework for the WorldForge project -- media files
ember_0.7.2+dfsg-1+b1_i386.deb 3D client framework for the WorldForge project
emboss-data_6.6.0+dfsg-6_all.deb data files for the EMBOSS package
emboss-doc_6.6.0+dfsg-6_all.deb documentation for EMBOSS
emboss-explorer_2.2.0-8_all.deb web-based GUI to EMBOSS
emboss-lib_6.6.0+dfsg-6_i386.deb EMBOSS Libraries
emboss-test_6.6.0+dfsg-6_all.deb test files for the EMBOSS package
emboss_6.6.0+dfsg-6_i386.deb European molecular biology open software suite
emdebian-archive-keyring_2.2_all.deb GnuPG archive keys for the emdebian repository
emelfm2-svg-icons_20100219-3_all.deb icon SVG files from emelfm2 project
emma_0.6-5_all.deb extendable MySQL managing assistant
emms_4.2-1.1_i386.deb Emacs MultiMedia System
empathy-common_3.12.12-4_all.deb GNOME multi-protocol chat and call client (common files)
empathy_3.12.12-4_i386.deb GNOME multi-protocol chat and call client
empire-hub_1.0.2.2_i386.deb Empire protocol multiplexer
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