ecopcr_0.5.0+dfsg-1_i386.deb


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Description

ecopcr - estimate PCR barcode primers quality

Property Value
Distribution Debian 9 (Stretch)
Repository Debian Main i386
Package filename ecopcr_0.5.0+dfsg-1_i386.deb
Package name ecopcr
Package version 0.5.0+dfsg
Package release 1
Package architecture i386
Package type deb
Category science
Homepage http://www.grenoble.prabi.fr/trac/ecoPCR/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 52.69 KB
Installed size 212.00 KB
DNA barcoding is a tool for characterizing the species origin using a
short sequence from a standard position and agreed upon position in the
genome. To be used as a DNA barcode, a genome locus should vary among
individuals of the same species only to a minor degree and it should
vary among species very quickly. From a practical point of view, a
barcode locus should be flanked by two conserved regions to design PCR
primers. Several manually discovered barcode loci like COI, rbcL, 18S,
16S and 23S rDNA, or trnH-ps are routinely used today, but no objective
function has been described to measure their quality in terms of
universality (barcode coverage, Bc ) or in terms of taxonomical
discrimination capacity (barcode specificity, Bs ).
ecoPCR is an electronic PCR software developed by LECA and
Helix-Project. It helps to estimate Barcode primers quality. In
conjunction with OBITools you can postprocess ecoPCR output to compute
barcode coverage and barcode specificity. New barcode primers can be
developed using the ecoPrimers software

Alternatives

Package Version Architecture Repository
ecopcr_0.5.0+dfsg-1_amd64.deb 0.5.0+dfsg amd64 Debian Main
ecopcr - - -

Requires

Name Value
libc6 >= 2.7
python3-reportlab -
python3:any -
zlib1g >= 1:1.1.4

Download

Type URL
Mirror ftp.br.debian.org
Binary Package ecopcr_0.5.0+dfsg-1_i386.deb
Source Package ecopcr

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install ecopcr deb package:
    # sudo apt-get install ecopcr

Files

Path
/usr/bin/ecoPCR
/usr/bin/ecoPCRFilter
/usr/bin/ecoPCRFormat
/usr/bin/ecoSort
/usr/bin/ecofind
/usr/bin/ecogrep
/usr/bin/ecoisundertaxon
/usr/share/doc/ecopcr/changelog.Debian.gz
/usr/share/doc/ecopcr/copyright
/usr/share/man/man1/ecoPCR.1.gz
/usr/share/man/man1/ecoPCRFormat.1.gz
/usr/share/man/man1/ecofind.1.gz
/usr/share/man/man1/ecogrep.1.gz
/usr/share/man/man1/ecoisundertaxon.1.gz

Changelog

2017-01-11 - Andreas Tille <tille@debian.org>
ecopcr (0.5.0+dfsg-1) unstable; urgency=medium
* Fix copyright
* Adapt watch file to freshly created tags
* cme fix dpkg-control
* debhelper 10
* hardening=+all
* fix some spelling issues
2015-06-25 - Andreas Tille <tille@debian.org>
ecopcr (0.5.0-1) unstable; urgency=low
* Initial release (Closes: #789921)

See Also

Package Description
ecryptfs-utils_111-4_i386.deb ecryptfs cryptographic filesystem (utilities)
ed2k-hash_0.3.3+deb2-3_i386.deb tool for generating ed2k-links
ed_1.10-2.1_i386.deb classic UNIX line editor
edac-utils_0.18-1+b1_i386.deb report kernel-detected PCI and ECC RAM errors
edb_1.31-3_all.deb database program for GNU Emacs
edbrowse_3.6.1-1+b2_i386.deb /bin/ed-alike webbrowser written in C
edenmath.app_1.1.1a-7.1+b1_i386.deb Scientific calculator for GNUstep
edfbrowser_1.58-1+b1_i386.deb viewer for biosignal storage files such as bdf and edf
edict-el_1.06-11_all.deb Emacs interface to Edict
edict_2016.12.06-1_all.deb English / Japanese dictionary
edid-decode_0.1~git20160708.c72db881-1_i386.deb decode the binary EDID information from monitors
edisplay_0.9.1-16+b1_i386.deb fast image manipulation programs (image viewer)
editmoin_1.17-2_all.deb edit MoinMoin wiki pages with your favourite editor
editorconfig-doc_0.12.1-1_all.deb coding style indenter across editors - documentation
editorconfig_0.12.1-1+b1_i386.deb coding style indenter for all editors - commandline tools
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