igv_2.3.38+dfsg-1_all.deb


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Description

igv - Integrative Genomics Viewer

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Nonfree i386
Package filename igv_2.3.38+dfsg-1_all.deb
Package name igv
Package version 2.3.38+dfsg
Package release 1
Package architecture all
Package type deb
Category field::biology implemented-in::java interface::x11 network::client non-free/science protocol::http role::program scope::utility use::viewing works-with::biological-sequence
Homepage http://www.broadinstitute.org/igv/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 14.58 MB
Installed size 15.84 MB
The Integrative Genomics Viewer (IGV) is a high-performance viewer that
efficiently handles large heterogeneous data sets, while providing a
smooth and intuitive user experience at all levels of genome resolution.
A key characteristic of IGV is its focus on the integrative nature of
genomic studies, with support for both array-based and next-generation
sequencing data, and the integration of clinical and phenotypic data.
Although IGV is often used to view genomic data from public sources,
its primary emphasis is to support researchers who wish to visualize and
explore their own data sets or those from colleagues. To that end, IGV
supports flexible loading of local and remote data sets, and is
optimized to provide high-performance data visualization and exploration
on standard desktop systems.

Alternatives

Package Version Architecture Repository
igv_2.3.38+dfsg-1_all.deb 2.3.38+dfsg all Debian Nonfree
igv - - -

Requires

Name Value
junit4 -
libbatik-java -
libbcprov-java -
libcofoja-java -
libcommons-io-java -
libcommons-logging-java -
libcommons-math-java -
libcommons-net1-java -
libconcurrent-java -
libguava-java -
libhttpclient-java -
libhttpcore-java -
libjama-java -
libjargs-java -
libjaxp1.3-java -
libjcommon-java -
libjfreechart-java -
libjgrapht0.8-java -
libjhdf5-java -
libjide-oss-java -
libjlibeps-java -
liblog4j1.2-java -
libsam-java -
libswing-layout-java -
libxml-commons-external-java -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package igv_2.3.38+dfsg-1_all.deb
Source Package igv

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install igv deb package:
    # sudo apt-get install igv

Files

Path
/usr/bin/igv
/usr/share/doc/igv/changelog.Debian.gz
/usr/share/doc/igv/copyright
/usr/share/java/igv-2.3.38.jar
/usr/share/java/igv.jar
/usr/share/man/man1/igv.1.gz

Changelog

2014-10-24 - Andreas Tille <tille@debian.org>
igv (2.3.38+dfsg-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
2014-08-15 - Andreas Tille <tille@debian.org>
igv (2.3.36+dfsg-1) unstable; urgency=medium
* New upstream version (refreshed patches)
* Adapt watch file to new location (github)
* Adapt to new uscan
* New Build-Depends: libcommons-io-java
* Drop Build-Depends libnb-absolutelayout-java and rather leave the
binary lib/AbsoluteLayout.jar in since we have JARs there anyway
* d/copyright: Updated regarding changed file names
2014-03-17 - Andreas Tille <tille@debian.org>
igv (2.3.14+dfsg-2) unstable; urgency=medium
* debian/upstream -> debian/upstream/metadata
* (Build-)Depends: libcofoja-java
Closes: #741052
* cme fix dpkg-control
* Add missing default-jdk in Build-Depends and use ${java:Depends}
instead of repeating dependencies manually
2013-09-13 - Andreas Tille <tille@debian.org>
igv (2.3.14+dfsg-1) unstable; urgency=low
* New upstream version
* debian/copyright: Removed Files: lib/jide* section because it is
not shipped any more in source in favour of the Debian packaged
version
Closes: #722677
* debian/control:
- cme fix dpkg-control
- debhelper 9
2013-07-25 - Olivier Sallou <osallou@debian.org>
igv (2.3.12+dfsg-1) unstable; urgency=low
* New upstream release
2013-06-02 - Olivier Sallou <osallou@debian.org>
igv (2.3.2+dfsg-2) unstable; urgency=low
* Move to unstable.
2013-05-01 - Olivier Sallou <osallou@debian.org>
igv (2.3.2+dfsg-1) experimental; urgency=low
* New upstream release
* Use libjide-oss-java from Debian (Closes: #703721).
* Use libcofoja-java from Debian
2013-02-23 - Olivier Sallou <osallou@debian.org>
igv (2.2.7+dfsg-1) experimental; urgency=low
[ Andreas Tille ]
* New upstream version
* debian/upstream: Add citation information
* debian/control:
- Enhanced long description
- Standards-Version: 3.9.3 (no changes needed)
- Enable JDK transition (thanks to James Page <james.page@ubuntu.com>
for the patch)
Closes: #683538
* debian/copyright:
- Proper DEP5 Format field
- Fixed Source field
- Added Files-Excluded to document what files were excluded from upstream
* debian/rules: get-orig-source using uscan from Git to exclude
Files-excluded automatically
2011-12-22 - Shaun Jackman <sjackman@debian.org>
igv (2.0.30-1) unstable; urgency=low
* New upstream release.
2011-07-25 - Shaun Jackman <sjackman@debian.org>
igv (2.0.6-1) unstable; urgency=low
* New upstream release.
* debian/control: Depend and Build-Depend on libcommons-logging-java,
libhttpclient-java, libhttpcore-java, libjcommon-java and
libjfreechart-java.
* debian/igv.1: Update.
* debian/watch: Update.

See Also

Package Description
inform-docs_6.31.1+dfsg-1.1_all.deb documentation for the Inform interactive fiction language (v6)
inform_6.31.1+dfsg-1.1_i386.deb story file compiler for the Inform interactive fiction language (v6)
intel-microcode_3.20180425.1~deb8u1_i386.deb Processor microcode firmware for Intel CPUs
iozone3_429-3_i386.deb Filesystem and Disk Benchmarking Tool
irpas_0.10-4.1_i386.deb Internetwork Routing Protocol Attack Suite
jhove_1.6+dfsg-1_all.deb JSTOR/Harvard Object Validation Environment
kstars-data-extra-tycho2_1.1r1-9_all.deb Tycho-2 star catalog for KStars
ldraw-parts_1401+ds-2_all.deb LDraw parts library
lgrind_3.67-3_i386.deb A pretty printer for various programming languages
libapache2-mod-fastcgi_2.4.7~0910052141-1.1+deb8u1_i386.deb Apache 2 FastCGI module for long-running CGI scripts
libarb-dev_6.0.2-1+deb8u1_i386.deb Graphical suite for phylogenetic sequence analysis (development files)
libarb_6.0.2-1+deb8u1_i386.deb Graphical suite for phylogenetic sequence analysis (libraries)
libcg_3.1.0013-2_i386.deb Nvidia Cg core runtime library
libcggl_3.1.0013-2_i386.deb Nvidia Cg Opengl runtime library
libclamunrar7_0.99-0+deb8u3_i386.deb anti-virus utility for Unix - unrar support
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