fsl-core_5.0.7-4_all.deb


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Description

fsl-core - metapackage for the latest version of FSL

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Nonfree i386
Package filename fsl-core_5.0.7-4_all.deb
Package name fsl-core
Package version 5.0.7
Package release 4
Package architecture all
Package type deb
Category non-free/science
Homepage http://www.fmrib.ox.ac.uk/fsl/
License -
Maintainer NeuroDebian Team <team@neuro.debian.net>
Download size 19.60 KB
Installed size 69.00 KB
FSL is a comprehensive library of image analysis and statistical tools
for fMRI, MRI and DTI brain imaging data. The suite consists of various
command line tools, as well as simple GUIs for its core analysis pipelines.
Among others, FSL offers implementations of standard GLM analysis,
white matter tractography, tissue segmentation, affine and non-linear
co-registration, and independent component analysis.
Some FSL components require additional data packages (fsl-atlases,
fsl-first-data, fsl-possum-data) that are currently available from the
NeuroDebian repository only. For more information on how to obtain these
data packages visit http://neuro.debian.net.
Users aiming to perform a complete FSL installation (including
all data components) are advised to install the 'fsl-complete'
package from NeuroDebian.

Alternatives

Package Version Architecture Repository
fsl-core_5.0.9-5~nd80+1_all.deb 5.0.9 all NeuroDebian Nonfree
fsl-core_5.0.9-5~nd80+1_all.deb 5.0.9 all NeuroDebian Nonfree
fsl-core_5.0.7-4_all.deb 5.0.7 all Debian Nonfree
fsl-core - - -

Requires

Name Value
fsl-5.0-core -

Replaces

Name Value
fsl << 5.0.3

Download

Type URL
Mirror ftp.br.debian.org
Binary Package fsl-core_5.0.7-4_all.deb
Source Package fsl

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install fsl-core deb package:
    # sudo apt-get install fsl-core

Files

Path
/etc/fsl/fsl.sh
/usr/share/doc/fsl-core/NEWS.Debian.gz
/usr/share/doc/fsl-core/changelog.Debian.gz
/usr/share/doc/fsl-core/copyright
/usr/share/man/man1/fsl.1.gz

Changelog

2014-07-23 - Michael Hanke <mih@debian.org>
fsl (5.0.7-4) unstable; urgency=medium
* Fix FTBFS on kfreebsd: Disable 'stack_dump' component that is "highly
non-portable" and can be replaced, if necessary, with plain gdb.
* Fix another bashism in the *monitor script generated by bedpostx.
2014-07-20 - Michael Hanke <mih@debian.org>
fsl (5.0.7-3) unstable; urgency=medium
* Improve FSL's build configuration to not treat any non-Linux platform
as a Mac (Closes: #755356).
2014-07-17 - Michael Hanke <mih@debian.org>
fsl (5.0.7-2) unstable; urgency=low
* Add a patch to make randomise_parallel work on systems that do not have
bash as their default shell (Closes: #693373). Thanks to Philip Chase for
the patch.
* Add a patch to honor an unset FSLPARALLEL (do not submit jobs to a
cluster) even in cases where SGE_ROOT is set (Closes: #685757). Thanks to
German Gomez-Herrero for the patch.
* Sanitize PATH and LD_LIBRARY_PATH when sourcing the configuration file.
Old/duplicate FSL path entries are now removed (Closes: #695257). Thanks
to Vincent Kersten for the patch.
2014-07-11 - Michael Hanke <mih@debian.org>
fsl (5.0.7-1) unstable; urgency=medium
* New upstream release.
- new component: gps
* Remove the documentation from the source package due to a number of files
with unclear origin and license. Consequently, the -doc has been removed
as well. Upstream confirms that documentation is best consumed from the
live wiki on the project homepage.
* Move the -gpu package setup into a patch that can be applied to backports
to particular releases. The current Debian unstable doesn't have a
functional nvcc and it is i386 and amd64 only anyway.
* Cleanup and remove old and merged patches.
* Bumped Standard version to 3.9.5 -- no changes necessary.
2014-04-14 - Michael Hanke <mih@debian.org>
fsl (5.0.6-2) unstable; urgency=medium
[ Yaroslav Halchenko ]
* debian/control
- limit build-depends on nvidia-cuda-toolkit only for x86 architectures
[ Michael Hanke ]
* Add libpng-dev as an alternative build-dependency to libpng12-dev (Closes:
#662337).
* Switch dependencies to plain tcl and tk packages (from tcl8.4/tk8.4).
This acknowledges the NMU of fsl-4.1 by Sergei Golovan to fix #737187.
2014-03-15 - Sergei Golovan <sgolovan@debian.org>
fsl (4.1.9-7.2) unstable; urgency=low
* Non-maintainer upload.
* Really replaced tcl8.4 and tk8.4 by tcl and tk in the package dependencies
(Closes: #737187).
2014-01-31 - Sergei Golovan <sgolovan@debian.org>
fsl (4.1.9-7.1) unstable; urgency=low
* Non-maintainer upload.
* Replaced tcl8.4 and tk8.4 by tcl and tk in the package dependencies
(Closes: #737187).
2013-11-01 - Michael Hanke <mih@debian.org>
fsl (5.0.6-1) neurodebian; urgency=low
* New upstream bugfix release:
- An error with voxelwise regressors in lower-level FEAT introduced in
FSL 5.0.5 has been fixed. It is stringly recommend to re-run any
lower-level FEAT analysis that used voxelwise regressors (e.g. PNM)
generated with FSL 5.0.5.
- Bugfixes for POSSUM and the ASL GUI.
* Downgrade -doc dependency on wikiattachments package from recommended
to suggested.

See Also

Package Description
fsl_5.0.7-4_all.deb transitional dummy package
gcc-4.8-doc_4.8.3-1_all.deb documentation for the GNU compilers (gcc, gobjc, g++)
gcc-4.9-doc_4.9.1-3_all.deb documentation for the GNU compilers (gcc, gobjc, g++)
gccgo-4.8-doc_4.8.3-1_all.deb documentation for the GNU Go compiler (gccgo)
gccgo-4.9-doc_4.9.1-3_all.deb documentation for the GNU Go compiler (gccgo)
gccintro_1.0-3_all.deb Introduction to GCC by Brian J. Gough
gcj-4.8-doc_4.8.3-1_all.deb documentation for the GNU Java tools (gcj, gij)
gcj-4.9-doc_4.9.1-3_all.deb documentation for the GNU Java tools (gcj, gij)
gdb-doc_7.7.1+dfsg-2_all.deb The GNU Debugger Documentation
gfortran-4.8-doc_4.8.3-1_all.deb documentation for the GNU Fortran Compiler (gfortran)
gfortran-4.9-doc_4.9.1-3_all.deb documentation for the GNU Fortran Compiler (gfortran)
glibc-doc-reference_2.19-1_all.deb GNU C Library: Documentation
gliese_3.0.95-2_all.deb stellar data set from the Third Catalogue of Nearby Stars
gmp-doc_6.0.0-1_all.deb GMP (Multiprecision arithmetic library) documentation
gnat-4.8-doc_4.8.3-1_all.deb documentation for the GNU Ada Compiler (gnat)
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