arb-doc_6.0.2-1+deb8u1_all.deb


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Description

arb-doc - Graphical suite for phylogenetic sequence analysis (documentation)

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Nonfree i386
Package filename arb-doc_6.0.2-1+deb8u1_all.deb
Package name arb-doc
Package version 6.0.2
Package release 1+deb8u1
Package architecture all
Package type deb
Category non-free/doc
Homepage http://www.arb-home.de/
License -
Maintainer Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Download size 273.24 KB
Installed size 2.20 MB
The ARB software is a graphically oriented package comprising various tools
for sequence database handling and data analysis. A central database of
processed (aligned) sequences and any type of additional data linked to the
respective sequence entries is structured according to phylogeny or other
user defined criteria.
This package contains the documentation for the package arb.

Alternatives

Package Version Architecture Repository
arb-doc_6.0.2-1+deb8u1_all.deb 6.0.2 all Debian Nonfree
arb-doc - - -

Requires

Name Value
ghostscript -
gv -
postscript-preview -
postscript-viewer -

Download

Type URL
Mirror ftp.br.debian.org
Binary Package arb-doc_6.0.2-1+deb8u1_all.deb
Source Package arb

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install arb-doc deb package:
    # sudo apt-get install arb-doc

Files

Path
/usr/share/doc-base/arb
/usr/share/doc/arb-doc/changelog.Debian.gz
/usr/share/doc/arb-doc/copyright
/usr/share/doc/arb/html/FAQS.html
/usr/share/doc/arb/html/Logo_25wht.gif
/usr/share/doc/arb/html/Protection.html
/usr/share/doc/arb/html/aci.html
/usr/share/doc/arb/html/acisrt.html
/usr/share/doc/arb/html/ad_align.html
/usr/share/doc/arb/html/ad_extended.html
/usr/share/doc/arb/html/agde.html
/usr/share/doc/arb/html/agde_CAP2.html
/usr/share/doc/arb/html/agde_DNAml_rates.html
/usr/share/doc/arb/html/agde_MrBayes.html
/usr/share/doc/arb/html/agde_MrBayesCustom.html
/usr/share/doc/arb/html/agde_clustalw.html
/usr/share/doc/arb/html/agde_clustalw_sub_clustalw_doc.html
/usr/share/doc/arb/html/agde_clustalw_sub_clustalw_help.html
/usr/share/doc/arb/html/agde_dnaml.html
/usr/share/doc/arb/html/agde_dnaml_sub_AxML_doc.html
/usr/share/doc/arb/html/agde_dnaml_sub_fastDNAml_doc.html
/usr/share/doc/arb/html/agde_dnapars.html
/usr/share/doc/arb/html/agde_lsadt.html
/usr/share/doc/arb/html/agde_mafft.html
/usr/share/doc/arb/html/agde_phylip.html
/usr/share/doc/arb/html/agde_phylip_distance.html
/usr/share/doc/arb/html/agde_phylip_distance_sub_dnadist_doc.html
/usr/share/doc/arb/html/agde_phylip_distance_sub_fitch_doc.html
/usr/share/doc/arb/html/agde_phylip_distance_sub_kitsch_doc.html
/usr/share/doc/arb/html/agde_phylip_distance_sub_neighbor_doc.html
/usr/share/doc/arb/html/agde_phylip_distance_sub_protdist_doc.html
/usr/share/doc/arb/html/agde_phyml-20130708.html
/usr/share/doc/arb/html/agde_phyml.html
/usr/share/doc/arb/html/agde_proml.html
/usr/share/doc/arb/html/agde_protpars.html
/usr/share/doc/arb/html/agde_raxml.html
/usr/share/doc/arb/html/agde_readseq.html
/usr/share/doc/arb/html/agde_readseq_sub_Formats.html
/usr/share/doc/arb/html/agde_readseq_sub_Readme.html
/usr/share/doc/arb/html/agde_readseq_sub_Readseq_help.html
/usr/share/doc/arb/html/agde_treepuzzle.html
/usr/share/doc/arb/html/alignment.html
/usr/share/doc/arb/html/ap_stack.html
/usr/share/doc/arb/html/arb.html
/usr/share/doc/arb/html/arb_commands.html
/usr/share/doc/arb/html/arb_db.html
/usr/share/doc/arb/html/arb_edit4.html
/usr/share/doc/arb/html/arb_envar.html
/usr/share/doc/arb/html/arb_export.html
/usr/share/doc/arb/html/arb_export_nds.html
/usr/share/doc/arb/html/arb_gde.html
/usr/share/doc/arb/html/arb_import.html
/usr/share/doc/arb/html/arb_intro.html
/usr/share/doc/arb/html/arb_merge.html
/usr/share/doc/arb/html/arb_merge_into.html
/usr/share/doc/arb/html/arb_merge_outof.html
/usr/share/doc/arb/html/arb_merge_workflow.html
/usr/share/doc/arb/html/arb_ntree.html
/usr/share/doc/arb/html/arb_pars.html
/usr/share/doc/arb/html/arb_pars_init.html
/usr/share/doc/arb/html/arb_secedit.html
/usr/share/doc/arb/html/asciiprint.html
/usr/share/doc/arb/html/awt_csp.html
/usr/share/doc/arb/html/bonds.html
/usr/share/doc/arb/html/bootstrap.html
/usr/share/doc/arb/html/branch_analysis.html
/usr/share/doc/arb/html/changes.html
/usr/share/doc/arb/html/checkfield.html
/usr/share/doc/arb/html/chimera_check.html
/usr/share/doc/arb/html/cluster_group.html
/usr/share/doc/arb/html/color.html
/usr/share/doc/arb/html/color_props.html
/usr/share/doc/arb/html/color_props_groups.html
/usr/share/doc/arb/html/colorize.html
/usr/share/doc/arb/html/concatenate.html
/usr/share/doc/arb/html/configuration.html
/usr/share/doc/arb/html/configurations.html
/usr/share/doc/arb/html/consense_algo.html
/usr/share/doc/arb/html/consense_tree.html
/usr/share/doc/arb/html/consensus.html
/usr/share/doc/arb/html/consensus_def.html
/usr/share/doc/arb/html/copyright.html
/usr/share/doc/arb/html/count_chars.html
/usr/share/doc/arb/html/csp_2_gnuplot.html
/usr/share/doc/arb/html/del_list.html
/usr/share/doc/arb/html/di_clusters.html
/usr/share/doc/arb/html/dist.html
/usr/share/doc/arb/html/dssp_ift.html
/usr/share/doc/arb/html/e4.html
/usr/share/doc/arb/html/e4_block.html
/usr/share/doc/arb/html/e4_consensus.html
/usr/share/doc/arb/html/e4_modsai.html
/usr/share/doc/arb/html/e4_options.html
/usr/share/doc/arb/html/e4_replace.html
/usr/share/doc/arb/html/e4_search.html
/usr/share/doc/arb/html/ebi_ift.html
/usr/share/doc/arb/html/ecoliref.html
/usr/share/doc/arb/html/ed4_nds.html
/usr/share/doc/arb/html/exec_bug.html
/usr/share/doc/arb/html/export_format.html
/usr/share/doc/arb/html/extended.html
/usr/share/doc/arb/html/faligner.html
/usr/share/doc/arb/html/fasta_ift.html
/usr/share/doc/arb/html/gde_flat_ift.html
/usr/share/doc/arb/html/gde_menus.html
/usr/share/doc/arb/html/gen_create.html
/usr/share/doc/arb/html/gene_extract.html
/usr/share/doc/arb/html/gene_hide.html
/usr/share/doc/arb/html/gene_info.html
/usr/share/doc/arb/html/gene_map.html
/usr/share/doc/arb/html/gene_mark.html
/usr/share/doc/arb/html/gene_mode.html
/usr/share/doc/arb/html/gene_options.html
/usr/share/doc/arb/html/gene_search.html
/usr/share/doc/arb/html/gene_species.html
/usr/share/doc/arb/html/gene_species_field_transfer.html
/usr/share/doc/arb/html/gene_species_mark.html
/usr/share/doc/arb/html/genes.html
/usr/share/doc/arb/html/glossary.html
/usr/share/doc/arb/html/helix.html
/usr/share/doc/arb/html/helixsym.html
/usr/share/doc/arb/html/help.html
/usr/share/doc/arb/html/help_index.html
/usr/share/doc/arb/html/importift.html
/usr/share/doc/arb/html/index.html
/usr/share/doc/arb/html/input_mask.html
/usr/share/doc/arb/html/input_mask_format.html
/usr/share/doc/arb/html/input_mask_new.html
/usr/share/doc/arb/html/insdel.html
/usr/share/doc/arb/html/insdel_sai.html
/usr/share/doc/arb/html/islandhopping.html
/usr/share/doc/arb/html/iupac-codes.html
/usr/share/doc/arb/html/macro.html
/usr/share/doc/arb/html/man_arb_edit4.html
/usr/share/doc/arb/html/manual.html
/usr/share/doc/arb/html/mark.html
/usr/share/doc/arb/html/mark_duplicates.html
/usr/share/doc/arb/html/mark_genes.html
/usr/share/doc/arb/html/mark_list.html
/usr/share/doc/arb/html/markbyref.html
/usr/share/doc/arb/html/markcolor.html
/usr/share/doc/arb/html/matrix_settings.html
/usr/share/doc/arb/html/max_freq.html
/usr/share/doc/arb/html/merge_species.html
/usr/share/doc/arb/html/mg_alignment.html
/usr/share/doc/arb/html/mg_configs.html
/usr/share/doc/arb/html/mg_extendeds.html
/usr/share/doc/arb/html/mg_names.html
/usr/share/doc/arb/html/mg_preserve.html
/usr/share/doc/arb/html/mg_spec_sel_field.html
/usr/share/doc/arb/html/mg_species.html
/usr/share/doc/arb/html/mg_trees.html
/usr/share/doc/arb/html/missbase.html
/usr/share/doc/arb/html/mod_field_list.html
/usr/share/doc/arb/html/mode.html
/usr/share/doc/arb/html/mode_group.html
/usr/share/doc/arb/html/mode_info.html
/usr/share/doc/arb/html/mode_kernlin.html
/usr/share/doc/arb/html/mode_length.html
/usr/share/doc/arb/html/mode_lzoom.html
/usr/share/doc/arb/html/mode_mark.html
/usr/share/doc/arb/html/mode_move.html
/usr/share/doc/arb/html/mode_nni.html
/usr/share/doc/arb/html/mode_optimize.html
/usr/share/doc/arb/html/mode_pzoom.html
/usr/share/doc/arb/html/mode_rotate.html
/usr/share/doc/arb/html/mode_select.html
/usr/share/doc/arb/html/mode_setroot.html
/usr/share/doc/arb/html/mode_spread.html
/usr/share/doc/arb/html/mode_swap.html
/usr/share/doc/arb/html/mode_width.html
/usr/share/doc/arb/html/mode_www.html
/usr/share/doc/arb/html/mp_params.html
/usr/share/doc/arb/html/multifurcate.html
/usr/share/doc/arb/html/multiprobe.html
/usr/share/doc/arb/html/multiproberesults.html
/usr/share/doc/arb/html/namesadmin.html
/usr/share/doc/arb/html/ne_align_seq.html
/usr/share/doc/arb/html/nekey_map.html
/usr/share/doc/arb/html/newwindow.html
/usr/share/doc/arb/html/next_neighbours.html
/usr/share/doc/arb/html/next_neighbours_common.html
/usr/share/doc/arb/html/next_neighbours_listed.html
/usr/share/doc/arb/html/no_tree.html
/usr/share/doc/arb/html/nt_align_select.html
/usr/share/doc/arb/html/nt_keys.html
/usr/share/doc/arb/html/nt_props_data.html
/usr/share/doc/arb/html/nt_tree_select.html
/usr/share/doc/arb/html/nt_tree_settings.html
/usr/share/doc/arb/html/optimize.html
/usr/share/doc/arb/html/organism_mark.html
/usr/share/doc/arb/html/organisms.html
/usr/share/doc/arb/html/pa_add.html
/usr/share/doc/arb/html/pa_add_sel.html
/usr/share/doc/arb/html/pa_bootstrap.html
/usr/share/doc/arb/html/pa_branchlengths.html
/usr/share/doc/arb/html/pa_optimizer.html
/usr/share/doc/arb/html/pa_partial.html
/usr/share/doc/arb/html/pa_quick.html
/usr/share/doc/arb/html/pa_quick_sel.html
/usr/share/doc/arb/html/pars.html
/usr/share/doc/arb/html/partial_sequences.html
/usr/share/doc/arb/html/pd_spec_param.html
/usr/share/doc/arb/html/pfold.html
/usr/share/doc/arb/html/pfold_props.html
/usr/share/doc/arb/html/pfold_sai.html
/usr/share/doc/arb/html/ph_export_markerline.html
/usr/share/doc/arb/html/phyl.html
/usr/share/doc/arb/html/phylo.html
/usr/share/doc/arb/html/pm_spec_param.html
/usr/share/doc/arb/html/pos_var_pars.html
/usr/share/doc/arb/html/primer.html
/usr/share/doc/arb/html/primer_new.html
/usr/share/doc/arb/html/primer_parameters.html
/usr/share/doc/arb/html/probe_param.html
/usr/share/doc/arb/html/probeadmin.html
/usr/share/doc/arb/html/probedesign.html
/usr/share/doc/arb/html/probedesignresult.html
/usr/share/doc/arb/html/probematch.html
/usr/share/doc/arb/html/props_frame.html
/usr/share/doc/arb/html/props_nds.html
/usr/share/doc/arb/html/props_www.html
/usr/share/doc/arb/html/proteinViewer.html
/usr/share/doc/arb/html/pt_server.html
/usr/share/doc/arb/html/quit.html
/usr/share/doc/arb/html/rdp_ift.html
/usr/share/doc/arb/html/realign_dna.html
/usr/share/doc/arb/html/reg.html
/usr/share/doc/arb/html/rename.html
/usr/share/doc/arb/html/resortbyother.html
/usr/share/doc/arb/html/resorttree.html
/usr/share/doc/arb/html/rna3d_dispBases.html
/usr/share/doc/arb/html/rna3d_dispHelices.html
/usr/share/doc/arb/html/rna3d_dispMolecule.html
/usr/share/doc/arb/html/rna3d_general.html
/usr/share/doc/arb/html/rna3d_mapSeqData.html
/usr/share/doc/arb/html/rst_log_zoom.html
/usr/share/doc/arb/html/rst_phys_zoom.html
/usr/share/doc/arb/html/saiProbeHelp.html
/usr/share/doc/arb/html/save.html
/usr/share/doc/arb/html/save_matrix.html
/usr/share/doc/arb/html/saveas.html
/usr/share/doc/arb/html/savedef.html
/usr/share/doc/arb/html/scandb.html
/usr/share/doc/arb/html/search_duplicates.html
/usr/share/doc/arb/html/search_equal_fields.html
/usr/share/doc/arb/html/searching.html
/usr/share/doc/arb/html/sec_display.html
/usr/share/doc/arb/html/sec_keys.html
/usr/share/doc/arb/html/sec_main.html
/usr/share/doc/arb/html/sec_mode.html
/usr/share/doc/arb/html/sec_props.html
/usr/share/doc/arb/html/secedit_imexport.html
/usr/share/doc/arb/html/security.html
/usr/share/doc/arb/html/sel_box.html
/usr/share/doc/arb/html/sel_fil.html
/usr/share/doc/arb/html/sel_spec.html
/usr/share/doc/arb/html/selected.html
/usr/share/doc/arb/html/selected_gene.html
/usr/share/doc/arb/html/seq_quality.html
/usr/share/doc/arb/html/sequence_colors.html
/usr/share/doc/arb/html/set_color_of_listed.html
/usr/share/doc/arb/html/set_protection.html
/usr/share/doc/arb/html/sina_main.html
/usr/share/doc/arb/html/sp_count_mrk.html
/usr/share/doc/arb/html/sp_del_mrkd.html
/usr/share/doc/arb/html/sp_info.html
/usr/share/doc/arb/html/sp_info_locked.html
/usr/share/doc/arb/html/sp_mark.html
/usr/share/doc/arb/html/sp_rename.html
/usr/share/doc/arb/html/sp_search.html
/usr/share/doc/arb/html/sp_sort_fld.html
/usr/share/doc/arb/html/sp_sort_phyl.html
/usr/share/doc/arb/html/sp_sp_2_ext.html
/usr/share/doc/arb/html/spa_copy.html
/usr/share/doc/arb/html/spa_create.html
/usr/share/doc/arb/html/spa_delete.html
/usr/share/doc/arb/html/spa_rename.html
/usr/share/doc/arb/html/spaf_convert.html
/usr/share/doc/arb/html/spaf_create.html
/usr/share/doc/arb/html/spaf_delete.html
/usr/share/doc/arb/html/spaf_reorder.html
/usr/share/doc/arb/html/species.html
/usr/share/doc/arb/html/species_join.html
/usr/share/doc/arb/html/srt.html
/usr/share/doc/arb/html/st_ml.html
/usr/share/doc/arb/html/submission.html
/usr/share/doc/arb/html/tags.html
/usr/share/doc/arb/html/tbl_boot2len.html
/usr/share/doc/arb/html/tbl_justify.html
/usr/share/doc/arb/html/tbl_reset.html
/usr/share/doc/arb/html/tbl_scale.html
/usr/share/doc/arb/html/tgroupall.html
/usr/share/doc/arb/html/tgroupcolor.html
/usr/share/doc/arb/html/tgroupnmrkd.html
/usr/share/doc/arb/html/tkeep_mrkd.html
/usr/share/doc/arb/html/toggle_secinfo.html
/usr/share/doc/arb/html/tr_export.html
/usr/share/doc/arb/html/tr_import.html
/usr/share/doc/arb/html/tr_jump.html
/usr/share/doc/arb/html/tr_type_irs.html
/usr/share/doc/arb/html/tr_type_list.html
/usr/share/doc/arb/html/tr_type_nds.html
/usr/share/doc/arb/html/tr_type_radial.html
/usr/share/doc/arb/html/track_ali_changes.html
/usr/share/doc/arb/html/trans_anal.html
/usr/share/doc/arb/html/translate_dna_2_pro.html
/usr/share/doc/arb/html/tree2file.html
/usr/share/doc/arb/html/tree2prt.html
/usr/share/doc/arb/html/tree_cmp.html
/usr/share/doc/arb/html/tree_diff.html
/usr/share/doc/arb/html/treeadm.html
/usr/share/doc/arb/html/trees.html
/usr/share/doc/arb/html/trm_boot.html
/usr/share/doc/arb/html/trm_del.html
/usr/share/doc/arb/html/trm_mrkd.html
/usr/share/doc/arb/html/tungroupall.html
/usr/share/doc/arb/html/undo.html
/usr/share/doc/arb/html/unittest.html
/usr/share/doc/arb/html/universal_ift.html
/usr/share/doc/arb/html/unmark_list.html
/usr/share/doc/arb/html/user_matrix.html
/usr/share/doc/arb/html/version.html
/usr/share/doc/arb/html/visualizeSAI.html
/usr/share/doc/arb/html/vn_delete.html
/usr/share/doc/arb/html/vn_import.html
/usr/share/doc/arb/html/vn_search.html
/usr/share/doc/arb/html/vn_suggest.html
/usr/share/doc/arb/html/write_field_list.html
/usr/share/doc/arb/html/prompt/format_alignments.html
/usr/share/lintian/overrides/arb-doc

Changelog

2015-12-10 - Andreas Tille <tille@debian.org>
arb (6.0.2-1+deb8u1) jessie; urgency=medium
* Skip compiler version check at all
Closes: #793187
2014-09-02 - Elmar Pruesse <elmar@pruesse.net>
arb (6.0.2-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version
Closes: #741890
* debian/upstream -> debian/upstream/metadata
* debian/control:
- Build-Depends: added libglib2.0-dev
- Depends: added mafft, mrbayes
* debian/rules
- Add explicite --remove-section=.comment option to manual strip call
* cme fix dpkg-control
* arb-common.dirs: Do not create unneeded lintian dir
* Add turkish debconf translation (thanks for the patch to Mert Dirik
<mertdirik@gmail.com>)
Closes: #757497
[ Elmar Pruesse ]
* patches removed:
- 10_config.makefiles.patch,
80_no_GL.patch
removed in favor of creating file from config.makefile.template via 
sed in debian/control
- 20_Makefile_main.patch
merged upstream
- 21_Makefiles.patch
no longer needed
- 30_tmpfile_CVE-2008-5378.patch: 
merged upstream
- 50_fix_gcc-4.8.patch:
merged upstream
- 40_add_libGLU.patch:
libGLU not needed for arb_ntree)
- 60_use_debian_packaged_raxml.patch:
merged upstream
- 70_hardening.patch
merged upstream
- 72_add_math_lib_to_linker.patch
does not appear to be needed
* patches added:
- 10_upstream_r12793__show_db_load_progress:
backported patch showing progress while ARB is loading a database
(needed as indicator/splash screen while ARB is launching)
- 20_upstream_r12794__socket_permissions:
backported security fix
- 30_upstream_r12814__desktop_keywords:
backported add keywords to desktop (fixes lintian warning)
- 40_upstream_r12815__lintian_spelling:
backported fix for lintian reported spelling errors
- 50_private_nameservers
change configuration to put nameservers into users home dirs
(avoids need for shared writeable directory)
- 60_use_debian_phyml
use phyml from debian package for both interfaces in ARB
* debian/rules:
- create config.makefile from override_dh_configure target
- use "make tarfile" in override_dh_install
- remove extra cleaning not needed for ARB 6
- use "dh_install --list-missing" to avoid missing files
- added override_dh_fixperms target
* debian/control:
- added libarb-dev package
- Depends: added phyml, xdg-utils
- Suggests: removed phyml
- fix lintian duplicate-short-description (new descriptions)
* debian/*.install:
- "unrolled" confusing globbing to select files
- pick files from debian/tmp
- moved all config files to /etc/arb
* debian/arb-common.templates: updated
* scripts:
- removed arb-add-pt-server
- launch-wrapper: 
- only add demo.arb to newly created $ARBUSERDATA
- pass commandline arguments through bin/arb wrapper
- preinst: removing old PT server index files on upgrade from 5.5*
- postinst: set setgid on shared PT dir
* rewrote arb.1 manfile
* added file icon for ARB databases
* using upstream arb_tcp.dat
2013-12-04 - Andreas Tille <tille@debian.org>
arb (5.5-5) unstable; urgency=low
* build-depend on libtiff-dev instead of libtiff4-dev (thanks for the
patch to Logan Rosen <logan@ubuntu.com>)
Closes: #729769
* cme fix dpkg-control
* cme fix dpkg-copyright
* canonical Vcs fields
* debian/patches/hardening.patch: Propagate hardening options
2013-06-28 - Andreas Tille <tille@debian.org>
arb (5.5-4) unstable; urgency=low
* Build-Depends: libglew-dev instead of libglew1.5-dev
Closes: #714327

See Also

Package Description
arb_6.0.2-1+deb8u1_i386.deb Graphical suite for phylogenetic sequence analysis
ascli_1.0.61.0-1_all.deb Amazon Autoscaling Tools
assaultcube-data_1.1.0.4+repack1-2.1_all.deb data files and documentation for AssaultCube
asterisk-prompt-es_1.4-1_all.deb Spanish prompts for the Asterisk PBX
astromenace-data-src_1.3.2+repack-1_all.deb data files for AstroMenace game
atmel-firmware_1.3-4_all.deb Firmware for Atmel at76c50x wireless networking chips
autodocktools_1.5.7~rc1+cvs.20140424-1_all.deb GUI to help set up, launch and analyze AutoDock dockings
axe_6.1.2-16.2_i386.deb Text editor for X
bison-doc_3.0.2-1_all.deb Documentation for the Bison parser generator
bluez-firmware_1.2-3_all.deb Firmware for Bluetooth devices
broadcom-sta-common_6.30.223.248-3_all.deb Common files for the Broadcom STA Wireless driver
broadcom-sta-dkms_6.30.223.248-3_all.deb dkms source for the Broadcom STA Wireless driver
broadcom-sta-source_6.30.223.248-3_all.deb Source for the Broadcom STA Wireless driver
bsdgames-nonfree_2.17-6_i386.deb rogue, the classic dungeon exploration game
bugsx_1.08-12_i386.deb program to evolve biomorphs using genetic algorithms
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