profisis_1.0.11-1_all.deb


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Description

profisis - prediction of protein-protein interaction sites from sequence

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main i386
Package name profisis
Package version 1.0.11
Package release 1
Package architecture all
Package type deb
Installed size 280 B
Download size 74.38 KB
Official Mirror ftp.br.debian.org
Profisis (ISIS) identifies interacting protein residues in protein-protein
interfaces from sequence alone.
The strongest predictions of the method reached over 90% accuracy in a
cross-validation experiment.

Alternatives

Package Version Architecture Repository
profisis_1.0.11-1_all.deb 1.0.11 all Debian Main
profisis - - -

Requires

Name Value
libconfig-inifiles-perl -
perl -
profnet-isis -

Download

Type URL
Binary Package profisis_1.0.11-1_all.deb
Source Package profisis

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install profisis deb package:
    # sudo apt-get install profisis

Files

Path
/usr/bin/profisis
/usr/share/doc/profisis/README.Debian
/usr/share/doc/profisis/changelog.Debian.gz
/usr/share/doc/profisis/changelog.gz
/usr/share/doc/profisis/copyright
/usr/share/doc/profisis/examples/3A1P_A.fasta
/usr/share/doc/profisis/examples/3A1P_A.hssp
/usr/share/doc/profisis/examples/3A1P_A.profisis
/usr/share/doc/profisis/examples/3A1P_A.rdbProf
/usr/share/man/man1/profisis.1.gz
/usr/share/profisis/jctAuto9newHssp990-51
/usr/share/profisis/profisisrc.default

Changelog

2012-07-09 - Cedric Staniewski <cedric@gmx.ca>
profisis (1.0.11-1) unstable; urgency=low
* Initial release (Closes: #680106)
[Laszlo Kajan <lkajan@rostlab.org>]
* Fixed URL in d/control.
* Put a note about pp-popularity-contest (nagging) in d/README.Debian.
* Added copyright and license of examples/3A1P_A.rdbProf to d/copyright.
2011-02-28 - Laszlo Kajan <lkajan@rostlab.org>
profisis (1.0.5) stable; urgency=low
* warn if pp-popcon is not installed
2011-02-18 - Laszlo Kajan <lkajan@rostlab.org>
profisis (1.0.4) stable; urgency=low
* Debian native now
* bugzilla url
* popularity contest
2010-05-07 - Laszlo Kajan <lkajan@rostlab.org>
profisis (1.0.3)
* profrdb -> rdbProf for consistency - second attempt
2010-05-07 - Laszlo Kajan <lkajan@rostlab.org>
profisis (1.0.2)
* Corrected man page environment variable
* profrdb -> rdbprof for consistency
2010-04-24 - Laszlo Kajan <lkajan@rostlab.org>
profisis (1.0.1)
* Updated manpage with example and other sections
* Examples are now installed
2010-04-24 - Laszlo Kajan <lkajan@rostlab.org>
profisis (1.0.0)
* Initial packaged version

See Also

Package Description
profnet-bval_1.0.22-2_i386.deb neural network architecture for profbval
profnet-chop_1.0.22-2_i386.deb neural network architecture for profchop
profnet-con_1.0.22-2_i386.deb neural network architecture for profcon
profnet-isis_1.0.22-2_i386.deb neural network architecture for profisis
profnet-md_1.0.22-2_i386.deb neural network architecture for metadisorder
profnet-norsnet_1.0.22-2_i386.deb neural network architecture for norsnet
profnet-prof_1.0.22-2_i386.deb neural network architecture for profacc
profnet-snapfun_1.0.22-2_i386.deb neural network architecture for snapfun
profphd-net_1.0.22-2_i386.deb neural network architecture for profphd
profphd-utils_1.0.10-1_i386.deb profphd helper utilities convert_seq and filter_hssp
profphd_1.0.40-1_all.deb secondary structure and solvent accessibility predictor
proftmb_1.1.12-2_i386.deb per-residue prediction of bacterial transmembrane beta barrels
proftpd-basic_1.3.5-1.1+deb8u2_i386.deb Versatile, virtual-hosting FTP daemon - binaries
proftpd-dev_1.3.5-1.1+deb8u2_i386.deb Versatile, virtual-hosting FTP daemon - development files
proftpd-doc_1.3.5-1.1+deb8u2_all.deb Versatile, virtual-hosting FTP daemon - documentation
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