probcons_1.12-9_i386.deb


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Description

probcons - PROBabilistic CONSistency-based multiple sequence alignment

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main i386
Package name probcons
Package version 1.12
Package release 9
Package architecture i386
Package type deb
Installed size 378 B
Download size 157.42 KB
Official Mirror ftp.br.debian.org
Tool for generating multiple alignments of protein sequences. Using a
combination of probabilistic modeling and consistency-based alignment
techniques, PROBCONS has achieved the highest accuracies of all alignment
methods to date. On the BAliBASE benchmark alignment database, alignments
produced by PROBCONS show statistically significant improvement over current
programs, containing an average of 7% more correctly aligned columns than
those of T-Coffee, 11% more correctly aligned columns than those of CLUSTAL W,
and 14% more correctly aligned columns than those of DIALIGN.

Alternatives

Package Version Architecture Repository
probcons_1.12-9_amd64.deb 1.12 amd64 Debian Main
probcons - - -

Requires

Name Value
libc6 >= 2.1.3
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.4.0

Download

Type URL
Binary Package probcons_1.12-9_i386.deb
Source Package probcons

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install probcons deb package:
    # sudo apt-get install probcons

Files

Path
/usr/bin/probcons
/usr/bin/probcons-RNA
/usr/share/doc/probcons/README.Debian
/usr/share/doc/probcons/README.gz
/usr/share/doc/probcons/changelog.Debian.gz
/usr/share/doc/probcons/copyright
/usr/share/man/man1/probcons-RNA.1.gz
/usr/share/man/man1/probcons.1.gz

Changelog

2012-04-03 - Andreas Tille <tille@debian.org>
probcons (1.12-9) unstable; urgency=low
[ Charles Plessy ]
* renamed debian/upstream-metadata.yaml to debian/upstream
[ Andreas Tille ]
* debian/upstream: Moved DOI+PMID to references
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- Fixed Vcs fields
* debian/copyright: Uhmm, this package had no copyright file at all!
* debian/README.source: deleted redundant handling advises for quilt
* debian/{compat,control}: debhelper 9
2011-05-02 - Andreas Tille <tille@debian.org>
probcons (1.12-8) unstable; urgency=low
* Standards-Version: 3.9.2 (no changes needed)
* debian/patches/fix-gcc-4.6.patch: Fix gcc-4.6 build issue
Closes: #625036
2011-01-04 - Charles Plessy <plessy@debian.org>
probcons (1.12-7) unstable; urgency=low
* Use dh for debian/rules, which will also switch off parallel building
(Closes: #607729, #608710).
* Switch to Debhelper 8 (debian/control, debian/compat).
2010-12-21 - Andreas Tille <tille@debian.org>
probcons (1.12-6) unstable; urgency=low
* Use proper C++ headers to fix gcc version 4.3 and higher
issues (thanks for the patch to Matthias Klose)
Closes: 607728
2010-11-17 - Andreas Tille <tille@debian.org>
probcons (1.12-5) unstable; urgency=low
[ Charles Plessy ]
* debian/control: Enhances: t-coffee.
* Updated my email address.
[ David Paleino ]
* debian/control:
- bumped Standards-Version to 3.8.0
+ enabled parallel building in debian/rules
- removed myself from Uploaders (will work from behind the scenes ;) )
- updated debhelper dependency on >= 6 (also debian/compat)
[ Charles Plessy ]
* Documented information in ‘debian/upstream-metadata.yaml’.
* Removed mention of the bibliographic reference in ‘debian/control’.
[ Andreas Tille ]
* Added myself to uploaders
* Make sure Dm-Uploader-Allowed is lower case
Closes: #601509
* Standards-Version: 3.9.1 (no changes needed)
* Debhelper >= 7
-> debian/rules: s/dh_clean -k/dh_prep/
* Source-Format 3.0 (quilt)
* debian/README.source
2008-01-04 - Charles Plessy <charles-debian-nospam@plessy.org>
probcons (1.12-4) unstable; urgency=low
[ Charles Plessy ]
* debian/control:
- Moved the Homepage: field out from the package's description.
- Allowed upload by Debian Maintainers.
- Checked the compliance with Policy 3.7.3
* debian/patches:
- swiched to quilt
- added a fix to build with GCC 4.3 (Closes: #455625)
* debian/rules:
- modify Main-RNA.cc so that it uses Defaults-RNA.h (Closes: #458926)
* debian/copyright:
- converted to machine-readable format.
[ David Paleino ]
* debian/probcons.1, debian/probcons-RNA.1, debian/pc-compare.1,
debian/pc-makegnuplot.1, debian/pc-project.1 added - these
have been statically built.
* debian/control:
- B-D updated
- added myself to Uploaders
* debian/rules:
- manpages statically built
- minor changes
2007-05-16 - Charles Plessy <charles-debian-nospam@plessy.org>
probcons (1.12-3) unstable; urgency=low
* Fixed typos which caused incomplete cleaning (Closes: #424301).
* Fixed double-building of binaries and manpages.
2007-04-18 - Charles Plessy <charles-debian-nospam@plessy.org>
probcons (1.12-2) unstable; urgency=low
* Corrected an error in the build rules making probcons-RNA, which
prevented it to benefit from the fixes on probcons.
(Closes: #417482) (again!)
2007-04-04 - Charles Plessy <charles-debian-nospam@plessy.org>
probcons (1.12-1) unstable; urgency=low
* New upstream release, buildable with gcc 4.3 (Closes: #417482)
* Add Subversion repository URL to debian/control.
* Including /usr/share/dpatch/dpatch.make in debian/rules.
* Updated manpages using the template of docbook-xsl 1.71.0.dfsg.1-1.1.
2007-02-14 - Charles Plessy <charles-debian-nospam@plessy.org>
probcons (1.11-1) unstable; urgency=low
* New upstream release fixing a bug with conflict between --annot and -a
options.
* Mended the watch file in the source package.

See Also

Package Description
procenv_0.36-1_i386.deb Utility to show process environment
procinfo_2.0.304-1_i386.deb reporter for system information from /proc and /sys
procmail-lib_2009.1202-4_all.deb procmail library of plug-in recipes
procmail_3.22-24+deb8u1_i386.deb Versatile e-mail processor
procmeter3_3.6-1_i386.deb graphical system status monitor
procps_3.3.9-9+deb8u1_i386.deb /proc file system utilities
procserv_2.6.0-1_i386.deb Process server with telnet console and log access
proda_1.0-8_i386.deb multiple alignment of protein sequences
prodigal_2.6.1-1_i386.deb Microbial (bacterial and archaeal) gene finding program
profanity_0.4.4-2_i386.deb console based XMPP client
profbval_1.0.22-1_all.deb predictor of flexible/rigid protein residues from sequence
profisis_1.0.11-1_all.deb prediction of protein-protein interaction sites from sequence
profnet-bval_1.0.22-2_i386.deb neural network architecture for profbval
profnet-chop_1.0.22-2_i386.deb neural network architecture for profchop
profnet-con_1.0.22-2_i386.deb neural network architecture for profcon
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