probalign_1.4-3_i386.deb


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Description

probalign - multiple sequence alignment using partition function posterior probabilities

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main i386
Package name probalign
Package version 1.4
Package release 3
Package architecture i386
Package type deb
Installed size 149 B
Download size 58.73 KB
Official Mirror ftp.br.debian.org
Probalign uses partition function posterior probability estimates to
compute maximum expected accuracy multiple sequence alignments. It
performs statistically significantly better than the leading alignment
programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0,
HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on
datasets containing N/C terminal extensions and on datasets with long
and heterogeneous length sequences. On heteregeneous length datasets
containing repeats Probalign alignment accuracy is 10% and 15% higher
than the other three methods when standard deviation of length is at
least 300 and 400.

Alternatives

Package Version Architecture Repository
probalign_1.4-3_amd64.deb 1.4 amd64 Debian Main
probalign - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.4.0

Download

Type URL
Binary Package probalign_1.4-3_i386.deb
Source Package probalign

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install probalign deb package:
    # sudo apt-get install probalign

Files

Path
/usr/bin/probalign
/usr/share/doc/probalign/README
/usr/share/doc/probalign/changelog.Debian.gz
/usr/share/doc/probalign/copyright
/usr/share/man/man1/probalign.1.gz

Changelog

2013-11-14 - Andreas Tille <tille@debian.org>
probalign (1.4-3) unstable; urgency=low
[ Andreas Tille ]
* debian/upstream
- fix typo (s/TITILE/TITLE/)
- moved DOI+PMID to references
- separate authors by ' and '
- added eprint
* debian/control:
- cme fix dpkg-control
- debhelper 9
- removed quilt Build-Depends
- canonical Vcs URLs
* debian/copyright: DEP5
* debian/patches/hardening.patch: Propagate hardening options
[ Charles Plessy ]
* Add missing word in long description (Closes: #703253). 
2011-05-02 - Andreas Tille <tille@debian.org>
probalign (1.4-2) unstable; urgency=low
* Standards-Version: 3.9.2 (no changes needed)
* Debhelper 8 (control+compat)
* debian/patches/fix-gcc-4.6.patch
Closes: #624979
2011-02-02 - Andreas Tille <tille@debian.org>
probalign (1.4-1) unstable; urgency=low
* Initial release (Closes: #611828)
(reupload with LGPL-3 license for debian/*)

See Also

Package Description
probcons-extra_1.12-9_i386.deb Extra programs from the probcons package
probcons_1.12-9_i386.deb PROBabilistic CONSistency-based multiple sequence alignment
procenv_0.36-1_i386.deb Utility to show process environment
procinfo_2.0.304-1_i386.deb reporter for system information from /proc and /sys
procmail-lib_2009.1202-4_all.deb procmail library of plug-in recipes
procmail_3.22-24+deb8u1_i386.deb Versatile e-mail processor
procmeter3_3.6-1_i386.deb graphical system status monitor
procps_3.3.9-9_i386.deb /proc file system utilities
procserv_2.6.0-1_i386.deb Process server with telnet console and log access
proda_1.0-8_i386.deb multiple alignment of protein sequences
prodigal_2.6.1-1_i386.deb Microbial (bacterial and archaeal) gene finding program
profanity_0.4.4-2_i386.deb console based XMPP client
profbval_1.0.22-1_all.deb predictor of flexible/rigid protein residues from sequence
profisis_1.0.11-1_all.deb prediction of protein-protein interaction sites from sequence
profnet-bval_1.0.22-2_i386.deb neural network architecture for profbval
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