proalign_0.603-1_i386.deb


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Description

proalign - Probabilistic multiple alignment program

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main i386
Package name proalign
Package version 0.603
Package release 1
Package architecture i386
Package type deb
Installed size 193 B
Download size 145.92 KB
Official Mirror ftp.br.debian.org
ProAlign performs probabilistic sequence alignments using hidden Markov
models (HMM). It includes a graphical interface (GUI) allowing to (i)
perform alignments of nucleotide or amino-acid sequences, (ii) view the
quality of solutions, (iii) filter the unreliable alignment regions and
(iv) export alignments to other software.
ProAlign uses a progressive method, such that multiple alignment is
created stepwise by performing pairwise alignments in the nodes of a
guide tree. Sequences are described with vectors of character
probabilities, and each pairwise alignment reconstructs the ancestral
(parent) sequence by computing the probabilities of different
characters according to an evolutionary model.

Alternatives

Package Version Architecture Repository
proalign_0.603-1_amd64.deb 0.603 amd64 Debian Main
proalign - - -

Requires

Name Value
default-jre -

Download

Type URL
Binary Package proalign_0.603-1_i386.deb
Source Package proalign

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install proalign deb package:
    # sudo apt-get install proalign

Files

Path
/usr/bin/proalign
/usr/share/doc/proalign/changelog.Debian.gz
/usr/share/doc/proalign/copyright
/usr/share/man/man1/proalign.1.gz
/usr/share/proalign/ProAlign.jar

Changelog

2013-05-01 - Thorsten Alteholz <debian@alteholz.de>
proalign (0.603-1) unstable; urgency=low
* Initial release (Closes: #378290)

See Also

Package Description
probabel-examples_0.4.3-2_all.deb Example files for ProbABEL
probabel_0.4.3-2_i386.deb Toolset for Genome-Wide Association Analysis
probalign_1.4-3_i386.deb multiple sequence alignment using partition function posterior probabilities
probcons-extra_1.12-9_i386.deb Extra programs from the probcons package
probcons_1.12-9_i386.deb PROBabilistic CONSistency-based multiple sequence alignment
procenv_0.36-1_i386.deb Utility to show process environment
procinfo_2.0.304-1_i386.deb reporter for system information from /proc and /sys
procmail-lib_2009.1202-4_all.deb procmail library of plug-in recipes
procmail_3.22-24+deb8u1_i386.deb Versatile e-mail processor
procmeter3_3.6-1_i386.deb graphical system status monitor
procps_3.3.9-9+deb8u1_i386.deb /proc file system utilities
procserv_2.6.0-1_i386.deb Process server with telnet console and log access
proda_1.0-8_i386.deb multiple alignment of protein sequences
prodigal_2.6.1-1_i386.deb Microbial (bacterial and archaeal) gene finding program
profanity_0.4.4-2_i386.deb console based XMPP client
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