prime-phylo_1.0.11-2_i386.deb


Advertisement

Description

prime-phylo - bayesian estimation of gene trees taking the species tree into account

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main i386
Package name prime-phylo
Package version 1.0.11
Package release 2
Package architecture i386
Package type deb
Installed size 3.24 KB
Download size 873.06 KB
Official Mirror ftp.br.debian.org
PrIME (Probabilistic Integrated Models of Evolution) is a package
supporting inference of evolutionary parameters in a Bayesian framework
using Markov chain Monte Carlo simulation. A distinguishing feature of
PrIME is that the species tree is taken into account when analyzing gene
trees.
The input data to PrIME is a multiple sequence alignment in FASTA format
and the output data contains trees in Newick format.

Alternatives

Package Version Architecture Repository
prime-phylo_1.0.11-2_amd64.deb 1.0.11 amd64 Debian Main
prime-phylo - - -

Requires

Name Value
libblas.so.3 -
libblas3 -
libboost-mpi1.55.0 -
libboost-serialization1.55.0 -
libc6 >= 2.7
libgcc1 >= 1:4.1.1
libhwloc5 -
liblapack.so.3 -
liblapack3 -
libopenmpi1.6 -
libstdc++6 >= 4.9
libxml2 >= 2.7.4
perl -

Download

Type URL
Binary Package prime-phylo_1.0.11-2_i386.deb
Source Package prime-phylo

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install prime-phylo deb package:
    # sudo apt-get install prime-phylo

Files

Path
/usr/bin/chainsaw
/usr/bin/mcmc_analysis
/usr/bin/primeDLRS
/usr/bin/primeDTLSR
/usr/bin/primeGEM
/usr/bin/primeGSRf
/usr/bin/reconcile
/usr/bin/reroot
/usr/bin/showtree
/usr/bin/tree2leafnames
/usr/bin/treesize
/usr/lib/prime-phylo/libprime-phylo-sfile.so
/usr/lib/prime-phylo/libprime-phylo.so
/usr/share/doc/prime-phylo/changelog.Debian.gz
/usr/share/doc/prime-phylo/changelog.gz
/usr/share/doc/prime-phylo/copyright
/usr/share/lintian/overrides/prime-phylo
/usr/share/man/man1/chainsaw.1.gz
/usr/share/man/man1/mcmc_analysis.1.gz
/usr/share/man/man1/primeDLRS.1.gz
/usr/share/man/man1/primeDTLSR.1.gz
/usr/share/man/man1/primeGEM.1.gz
/usr/share/man/man1/primeGSRf.1.gz
/usr/share/man/man1/reconcile.1.gz
/usr/share/man/man1/reroot.1.gz
/usr/share/man/man1/showtree.1.gz
/usr/share/man/man1/tree2leafnames.1.gz
/usr/share/man/man1/treesize.1.gz

Changelog

2014-10-17 - Andreas Tille <tille@debian.org>
prime-phylo (1.0.11-2) unstable; urgency=medium
* Add missing Vcs fields.
* cme fix dpkg-control
* Move debian/upstream to debian/upstream/metadata
2012-12-17 - Erik Sjolund <erik.sjolund@gmail.com>
prime-phylo (1.0.11-1) unstable; urgency=low
* Initial release (Closes: #684039)

See Also

Package Description
primer3_2.3.6-1_i386.deb Tool to design flanking oligo nucleotides for DNA amplification
primrose_6+dfsg1-3_i386.deb compelling tile-placement puzzle game
primus-libs-ia32_0~20140711-1_i386.deb Shared libraries for primus (32-bit)
primus-libs_0~20140711-1_i386.deb Shared libraries for primus
primus_0~20140711-1_i386.deb client-side GPU offloading for NVIDIA Optimus
print-manager_4.14.0-1_i386.deb printer configuration and monitoring tools
printer-driver-all-enforce_0.20140714_all.deb printer drivers metapackage - enforcing version
printer-driver-all_0.20140714_all.deb printer drivers metapackage
printer-driver-brlaser_3-3_i386.deb printer driver for (some) Brother laser printers
printer-driver-c2050_0.3b-5_i386.deb printer driver for Lexmark 2050 Color Jetprinter
printer-driver-c2esp_27-2_i386.deb printer driver for Kodak ESP AiO color inkjet Series
printer-driver-cjet_0.8.9-6_i386.deb printer driver for Canon LBP laser printers
printer-driver-cups-pdf_2.6.1-15_i386.deb printer driver for PDF writing via CUPS
printer-driver-dymo_1.4.0-5_i386.deb printer driver for DYMO label printers
printer-driver-escpr_1.4.1-2_i386.deb printer driver for Epson Inkjet that use ESC/P-R
Advertisement
Advertisement