predictprotein_1.1.06-1_all.deb


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Description

predictprotein - suite of protein sequence analysis tools

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main i386
Package name predictprotein
Package version 1.1.06
Package release 1
Package architecture all
Package type deb
Installed size 213 B
Download size 57.43 KB
Official Mirror ftp.br.debian.org
PredictProtein is a sequence analysis suite providing prediction of protein
structure and function.
PredictProtein takes a protein sequence as input and provides the following
per-residue, or whole protein annotations:
* secondary structure
* solvent accessibility
* multiple sequence alignments
* PROSITE sequence motifs
* low-complexity regions
* nuclear localisation signals
* regions lacking regular structure (NORS)
* unstructured loops
* transmembrane helices
* transmembrane beta barrels
* coiled-coil regions
* disulfide-bonds
* disordered regions
* B-value flexibility
* protein-protein interaction sites
* Gene Ontology terms

Alternatives

Package Version Architecture Repository
predictprotein_1.1.06-1_all.deb 1.1.06 all Debian Main
predictprotein - - -

Requires

Name Value
bioperl -
blast2 -
disulfinder -
hmmer >= 3.0
hmmer2 -
librg-exception-perl -
librg-utils-perl -
make -
metastudent -
ncbi-seg -
ncoils >= 2002-3
norsnet -
norsp -
perl -
predictnls -
profbval -
profisis -
profphd -
proftmb -
reprof -

Download

Type URL
Binary Package predictprotein_1.1.06-1_all.deb
Source Package predictprotein

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install predictprotein deb package:
    # sudo apt-get install predictprotein

Files

Path
/usr/bin/predictprotein
/usr/share/doc/predictprotein/changelog.Debian.gz
/usr/share/doc/predictprotein/changelog.gz
/usr/share/doc/predictprotein/copyright
/usr/share/doc/predictprotein/examples/cad23.fasta
/usr/share/doc/predictprotein/examples/p53.fasta
/usr/share/doc/predictprotein/examples/tquick.fasta
/usr/share/doc/predictprotein/examples/tsnap_query.fasta
/usr/share/man/man1/predictprotein.1.gz
/usr/share/man/man3/RG::PP::ACL.3pm.gz
/usr/share/perl5/RG/PP/ACL.pm
/usr/share/predictprotein/MakefilePP.mk
/usr/share/predictprotein/predictproteinrc.default
/usr/share/predictprotein/helper_apps/blast2html.pl
/usr/share/predictprotein/helper_apps/filter_blastp_big.pl
/usr/share/predictprotein/helper_apps/nors.pl
/usr/share/predictprotein/helper_apps/prosite_scan.pl
/usr/share/predictprotein/resources/HtmlHr.html
/usr/share/predictprotein/resources/HtmlQuote.html

Changelog

2014-10-02 - Andreas Tille <tille@debian.org>
predictprotein (1.1.06-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
* debhelper 9
* d/copyright: Move "Files: *" section on top to fit DEP5
2014-04-02 - Andreas Tille <tille@debian.org>
predictprotein (1.1.01-1) unstable; urgency=low
[ Guy Yachdav ]
* New upstream release: integrated somena(1)
[ Andreas Tille ]
* Priority: optional
* Removed README.source since this it just explains usual practice
* cme fix dpkg-control
* correct DEP5 syntax and content of debian/copyright
2014-03-28 - Guy Yachdav <gyachdav@rostlab.org>
predictprotein (1.0.99-1) UNRELEASED; urgency=low
* New upstream release: integrated reprof(1)
2014-03-10 - Guy Yachdav <gyachdav@rostlab.org>
predictprotein (1.0.98) UNRELEASED; urgency=low
* New upstream release: integrated TMSEG(1)
2014-02-26 - Guy Yachdav <gyachdav@rostlab.org>
predictprotein (1.0.97~bpo70+1) UNRELEASED; urgency=low
* New upstream release: mapped lc3 extensions to method.
2014-02-11 - Guy Yachdav <gyachdav@rostlab.org>
predictprotein (1.0.95-1~bpo70+1) UNRELEASED; urgency=low
* New upstream release: upgraded to loctree3 (lc3)
2013-09-30 - Laszlo Kajan <lkajan@rostlab.org>
predictprotein (1.0.94-1) unstable; urgency=low
* New upstream release: fixes "FTBFS: POD errors" (Closes: #724122).
2013-06-10 - Laszlo Kajan <lkajan@rostlab.org>
predictprotein (1.0.92-1~bpo70+1) unstable; urgency=low
* New upstream release.
2013-01-24 - Guy Yachdav <gyachdav@rostlab.org>
predictprotein (1.0.90-1) unstable; urgency=low
* New upstream release
2012-12-05 - Laszlo Kajan <lkajan@rostlab.org>
predictprotein (1.0.88-1) unstable; urgency=low
* New upstream release

See Also

Package Description
prelink_0.0.20130503-1_i386.deb ELF prelinking utility to speed up dynamic linking
preload_0.6.4-2_i386.deb adaptive readahead daemon
prelude-correlator_1.0.0-1_all.deb Security Information Management System [ Correlator ]
prelude-lml_1.0.0-5.3_i386.deb Security Information Management System [ Log Agent ]
prelude-manager_1.0.1-5.1_i386.deb Security Information Management System [ Manager ]
prelude-notify_0.9.1-1_all.deb Security Information Management System [ Desktop Notifier ]
premake4_4.3+repack1-2_i386.deb cross-platform build script generator
preprocess_1.1.0+ds-1_all.deb portable multi-language file preprocessor
prerex_6.5.3-1_i386.deb course prerequisite chart editor for LaTeX/TikZ
presage-dbus_0.9-1_all.deb intelligent predictive text entry platform (D-Bus service)
presage_0.9-1_i386.deb intelligent predictive text entry platform (tools and demos)
pretzel_2.0n-2-0.3_i386.deb Prettyprinter generator for noweb
preview-latex-style_11.87-3+deb8u1_all.deb extraction of elements from LaTeX documents as graphics
preview.app_0.8.5-10+b1_i386.deb General purpose image viewer for GNUstep
prewikka_1.0.0-1.3_all.deb Security Information Management System [ Web Interface ]
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