predictnls_1.0.20-1_all.deb


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Description

predictnls - prediction and analysis of protein nuclear localization signals

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main i386
Package name predictnls
Package version 1.0.20
Package release 1
Package architecture all
Package type deb
Installed size 4.51 KB
Download size 2.05 MB
Official Mirror ftp.br.debian.org
predictnls is a method for the prediction and analysis of protein nuclear
localization signals (NLS).  In addition to reporting the positions of
NLSs found, predictnls also gives short statistics.

Alternatives

Package Version Architecture Repository
predictnls_1.0.20-1_all.deb 1.0.20 all Debian Main
predictnls - - -

Requires

Name Value
perl -

Download

Type URL
Binary Package predictnls_1.0.20-1_all.deb
Source Package predictnls

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install predictnls deb package:
    # sudo apt-get install predictnls

Files

Path
/usr/bin/predictnls
/usr/share/doc/predictnls/README
/usr/share/doc/predictnls/changelog.Debian.gz
/usr/share/doc/predictnls/changelog.gz
/usr/share/doc/predictnls/copyright
/usr/share/doc/predictnls/examples/O49931.fa
/usr/share/doc/predictnls/examples/O49931.nls
/usr/share/man/man1/predictnls.1.gz
/usr/share/predictnls/grep_NLS_update.pl
/usr/share/predictnls/predictnlsrc.default
/usr/share/predictnls/data/DnaMotifBigStat
/usr/share/predictnls/data/DnaMotifStat
/usr/share/predictnls/data/DnaNlsList
/usr/share/predictnls/data/ExptNls.rdb
/usr/share/predictnls/data/ExptNlsList
/usr/share/predictnls/data/Full_NLS_list
/usr/share/predictnls/data/Loci.dat
/usr/share/predictnls/data/My_NLS_list
/usr/share/predictnls/data/NLS_List
/usr/share/predictnls/data/NewProtList
/usr/share/predictnls/data/OutOfTree
/usr/share/predictnls/data/Papers_NLS.dat
/usr/share/predictnls/data/allProt.fasta
/usr/share/predictnls/data/nlsTree
/usr/share/predictnls/data/prot_list

Changelog

2012-07-10 - Julia Ertl <ertlj@in.tum.de>
predictnls (1.0.20-1) unstable; urgency=low
* initial release (Closes: #681271)
2011-06-03 - Laszlo Kajan <lkajan@rostlab.org>
predictnls (1.0.18) unstable; urgency=low
* fixed warnings for test sequences MNKIPIKDLLNPGAA and MNKIPIKDLLNPG
* bug 39 (PredictNLS misses any NLS right at start of the protein) fixed
* fixed bug 37, 38, 40: LICENSE file missing; PredictNLS start positions
off by one (using zero based counting); predictNLS only reports last
match for any one NLS motif
2011-04-17 - Laszlo Kajan <lkajan@rostlab.org>
predictnls (1.0.17) unstable; urgency=low
* better error reporting around line 301
2011-02-18 - Laszlo Kajan <lkajan@rostlab.org>
predictnls (1.0.16) unstable; urgency=low
* bugzilla url
* popularity contest
2010-11-04 - Guy Yachdav <gyachdav@rostlab.org>
predictnls (1.0.15) stable; urgency=low
* Changed references to online help
2010-10-13 - Laszlo Kajan <lkajan@rostlab.org>
predictnls (1.0.14) stable; urgency=low
* fixed perl warning
2010-10-13 - Laszlo Kajan <lkajan@rostlab.org>
predictnls (1.0.13) stable; urgency=low
* fixed deletion of output file bug
2010-10-13 - Laszlo Kajan <lkajan@rostlab.org>
predictnls (1.0.12) stable; urgency=low
* added nlsdat option to extract non-html nls prediction along with the html
* fixed html report table
2010-09-25 - Laszlo Kajan <lkajan@rostlab.org>
predictnls (1.0.11) stable; urgency=low
* Fixed temporary dir missing '/' bug
2010-08-18 - Laszlo Kajan <lkajan@rostlab.org>
predictnls (1.0.10)
* Fixed make file

See Also

Package Description
predictprotein_1.1.06-1_all.deb suite of protein sequence analysis tools
prelink_0.0.20130503-1_i386.deb ELF prelinking utility to speed up dynamic linking
preload_0.6.4-2_i386.deb adaptive readahead daemon
prelude-correlator_1.0.0-1_all.deb Security Information Management System [ Correlator ]
prelude-lml_1.0.0-5.3_i386.deb Security Information Management System [ Log Agent ]
prelude-manager_1.0.1-5.1_i386.deb Security Information Management System [ Manager ]
prelude-notify_0.9.1-1_all.deb Security Information Management System [ Desktop Notifier ]
premake4_4.3+repack1-2_i386.deb cross-platform build script generator
preprocess_1.1.0+ds-1_all.deb portable multi-language file preprocessor
prerex_6.5.3-1_i386.deb course prerequisite chart editor for LaTeX/TikZ
presage-dbus_0.9-1_all.deb intelligent predictive text entry platform (D-Bus service)
presage_0.9-1_i386.deb intelligent predictive text entry platform (tools and demos)
pretzel_2.0n-2-0.3_i386.deb Prettyprinter generator for noweb
preview-latex-style_11.87-3+deb8u1_all.deb extraction of elements from LaTeX documents as graphics
preview.app_0.8.5-10+b1_i386.deb General purpose image viewer for GNUstep
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