poa_2.0+20060928-3_i386.deb


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Description

poa - Partial Order Alignment for multiple sequence alignment

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main i386
Package name poa
Package version 2.0+20060928
Package release 3
Package architecture i386
Package type deb
Installed size 155 B
Download size 46.50 KB
Official Mirror ftp.br.debian.org
POA is Partial Order Alignment, a fast program for multiple sequence
alignment (MSA) in bioinformatics. Its advantages are speed,
scalability, sensitivity, and the superior ability to handle branching
/ indels in the alignment. Partial order alignment is an approach to
MSA, which can be combined with existing methods such as progressive
alignment. POA optimally aligns a pair of MSAs and which therefore can
be applied directly to progressive alignment methods such as CLUSTAL.
For large alignments, Progressive POA is 10-30 times faster than
CLUSTALW.

Alternatives

Package Version Architecture Repository
poa_2.0+20060928-3_amd64.deb 2.0+20060928 amd64 Debian Main
poa - - -

Requires

Name Value
libc6 >= 2.7

Download

Type URL
Binary Package poa_2.0+20060928-3_i386.deb
Source Package poa

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install poa deb package:
    # sudo apt-get install poa

Files

Path
/usr/bin/poa
/usr/share/doc/poa/NEWS.Debian.gz
/usr/share/doc/poa/README.Debian
/usr/share/doc/poa/README.gz
/usr/share/doc/poa/changelog.Debian.gz
/usr/share/doc/poa/copyright
/usr/share/doc/poa/examples/multidom.seq
/usr/share/man/man1/poa.1.gz
/usr/share/poa/blosum80.mat
/usr/share/poa/blosum80_trunc.mat
/usr/share/poa/make_pscores.pl

Changelog

2012-03-08 - Andreas Tille <tille@debian.org>
poa (2.0+20060928-3) unstable; urgency=low
[ Charles Plessy ]
* Updated my email address.
[ David Paleino ]
* Removed myself from Uploaders
[ Charles Plessy ]
* Documented information in ‘debian/upstream’.
* Removed mention of the bibliographic reference in ‘debian/control’.
[ Andreas Tille ]
* debian/upstream:
- Fixed URLs
- Moved DOI/PMID to References
- Removed (wrong Homepage)
- Removed watch
* debian/control:
- Former homepage does not work any more, use Sourceforge page as homepage
- Fixed VCS fields
- Standards-Version: 3.9.3 (no changes needed)
* debian/source/format: 3.0 (quilt)
* debhelper 9 (control+compat)
* debian/copyright: Rewritten to fit DEP5 and verified using
cme fix dpkg-copyright
* debian/rules + debhelper files:
- use short dh
- do not try to redirect output of test to stdout which breaks inside
pbuilder
* debian/test/multidom.clustal: Store result of proposed test and compare
in dh_auto_test target
2008-03-21 - Andreas Tille <tille@debian.org>
poa (2.0+20060928-2) unstable; urgency=low
[ Charles Plessy ]
* debian/control:
- Add Subversion repository URL to debian/control.
- Moved the Homepage: field out from the package's description.
- Enhances: t-coffee.
[ Nelson A. de Oliveira ]
* Added watch file.
[ David Paleino ]
* debian/poa.1 added - statically built
* debian/control:
- B-D updated
- added myself to Uploaders
- moved XS-Vcs-* to Vcs-*
- Updated to Standards-Version 3.7.3 (no changes needed)
* debian/rules:
- statically build manpages (target poa.1 available)
- minor changes
[ Andreas Tille ]
* Added myself to uploaders
2006-09-28 - Charles Plessy <charles-debian-nospam@plessy.org>
poa (2.0+20060928-1) unstable; urgency=low
* New upstream version. THE PREVIOUS VERSION WAS NOT 2.0.
* Updated manpage.
* Added a test rule.
* Removed the watch file.
2006-08-20 - Charles Plessy <charles-debian-nospam@plessy.org>
poa (2.0-1) unstable; urgency=low
* Initial release Closes: #378288

See Also

Package Description
poc-streamer_0.4.2-3_i386.deb An MP3/Ogg multicast/HTTP streamer and MP3 cutting tool
pocketsphinx-hmm-en-hub4wsj_0.8-5_all.deb Speech recognition tool - front-end library development files
pocketsphinx-hmm-en-tidigits_0.8-5_all.deb Speech recognition tool - front-end library development files
pocketsphinx-hmm-zh-tdt_0.8-5_all.deb Speech recognition tool - front-end library development files
pocketsphinx-lm-en-hub4_0.8-5_all.deb Speech recognition tool - front-end library development files
pocketsphinx-lm-zh-hans-gigatdt_0.8-5_all.deb Speech recognition tool - front-end library development files
pocketsphinx-lm-zh-hant-gigatdt_0.8-5_all.deb Speech recognition tool - front-end library development files
pocketsphinx_0.8-5_i386.deb Speech recognition tool
pod2pdf_0.42-5_all.deb Plain Old Documentation to Portable Document Format converter
podbrowser_0.12-2_all.deb Documentation browser for Perl
podget_0.7.3-1_all.deb Podcast aggregrator/downloader optimized for cron
podracer_1.4-2_all.deb podcast aggregator/downloader
poe.app_0.5.1-5+b4_i386.deb Vorbis comment editor
poedit-common_1.6.10-2_all.deb Common files for poedit
poedit_1.6.10-2_i386.deb gettext catalog editor
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