plink_1.07-3_i386.deb


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Description

plink - whole-genome association analysis toolset

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main i386
Package name plink
Package version 1.07
Package release 3
Package architecture i386
Package type deb
Installed size 2.71 KB
Download size 1.19 MB
Official Mirror ftp.br.debian.org
plink expects as input the data from SNP (single
nucleotide polymorphism) chips of many individuals
and their phenotypical description of a disease.
It finds associations of single or pairs of DNA
variations with a phenotype and can retrieve
SNP annotation from an online source.
SNPs can evaluated individually or as pairs for their
association with the disease phenotypes. The joint
investigation of copy number variations is supported.
A variety of statistical tests have been implemented.
Please note: The executable was renamed to p-link
because of a name clash.  Please read more about this
in /usr/share/doc/README.Debian.

Alternatives

Package Version Architecture Repository
plink_1.07-3_amd64.deb 1.07 amd64 Debian Main
plink - - -

Requires

Name Value
libc6 >= 2.4
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.4.0
zlib1g >= 1:1.1.4

Download

Type URL
Binary Package plink_1.07-3_i386.deb
Source Package plink

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install plink deb package:
    # sudo apt-get install plink

Files

Path
/usr/bin/p-link
/usr/lib/plink/plink
/usr/share/doc/plink/README.Debian
/usr/share/doc/plink/README.txt
/usr/share/doc/plink/changelog.Debian.gz
/usr/share/doc/plink/copyright
/usr/share/doc/plink/examples/test.map
/usr/share/doc/plink/examples/test.ped
/usr/share/man/man1/p-link.1.gz

Changelog

2012-04-23 - Andreas Tille <tille@debian.org>
plink (1.07-3) unstable; urgency=low
* debian/patches/gcc-4.7.patch: previous patch was incomplete
because the same problem occured in more files. Now really
Closes: #667325
2012-04-22 - Andreas Tille <tille@debian.org>
plink (1.07-2) unstable; urgency=low
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- Fixed Vcs fields
- Removed quilt from Build-Depends
* debian/upstream: Added citation information
* debian/source/format: 3.0 (quilt)
* debian/get-orig-source: Better chances to get a unique upstream
tarball after repackaging
* debian/copyright: 
- Rewritten to match DEP5 and verified using
cme fix dpkg-copyright
- Fix FSF address
* debian/rules: Rewritten to use short dh
* debian/patches/gcc-4.7.patch: Fix nested declaration
Thanks for the hints on debian-mentors list to
Rodolfo García Peñas <kix@kix.es>, Dmitry Nezhevenko <dion@inhex.net>,
Fernando Lemos <fernandotcl@gmail.com
Closes: 667325
* Debhelper 9 (control+compat)
2009-10-23 - Andreas Tille <tille@debian.org>
plink (1.07-1) unstable; urgency=low
* New upstream version
* Removed debian/patches/20_plink-1.06-gcc4.4.patch because it
is applied upstream
* Standards-Version: 3.8.3 (no changes needed)
* Debhelper 7
* Build-Depends: zlib1g-dev
2009-07-15 - Charles Plessy <plessy@debian.org>
plink (1.06-4) unstable; urgency=low
* debian/rules:
- Add support for DEB_BUILD_OPTIONS (Policy § 4.9.1).
- Set FORCE_DYNAMIC=1 instead of patching the Makefile
(deleted debian/patches/dynamic.patch).
* debian/control:
- Added myself to the uploaders.
- Incremented Standards-Version to reflect conformance with
Policy 3.8.2 (no changes needed).
* documented in README.source how to find help with quilt.
2009-05-19 - Andreas Tille <tille@debian.org>
plink (1.06-3) unstable; urgency=low
* Now really applying the patch to fix 64bit problems
which really
Closes: #528659
2009-05-16 - Andreas Tille <tille@debian.org>
plink (1.06-2) unstable; urgency=low
* Fallback to endian.h if all else fails on 64bit machines
(Thanks to Peter Green <plugwash@p10link.net> for the patch)
Closes: #528659
2009-05-04 - Andreas Tille <tille@debian.org>
plink (1.06-1) unstable; urgency=low
* New upstream version
* debian/get-orig-source
* Standards-Version: 3.8.1 (no changes needed)
* Moved plink executable to /usr/lib/plink and symlinked
/usr/bin/p-link to this location; renamed manpage accordingly
Added explicit hint in README.Debian how to proceed if you
need the original name.
Closes: #503367
* debian/patches/20_plink-1.06-gcc4.4.patch: Patch to compile
using gcc 4.4
* debian/rules: Make sure example data files are not executable
* debian/patches/dynamic.patch: do not link statically
2008-08-24 - Steffen Moeller <moeller@debian.org>
plink (1.03p1-1) unstable; urgency=low
* Initial release (Closes: #490832).

See Also

Package Description
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ploop_1.12.1-1_i386.deb tools to work with ploop devices and images
plopfolio.app_0.1.0-6+b4_i386.deb Personal dashboard for GNUstep
plotdrop_0.5.2-3_i386.deb A minimal GNOME frontend to GNUPlot
ploticus_2.42-3+b2_i386.deb script driven business graphics package
plotutils_2.6-3_i386.deb GNU plotutils command line tools based on libplot
plowshare4_1.0.5-1+deb8u1_all.deb Download and upload files from file sharing websites
plplot-doc_5.10.0+dfsg-1_all.deb Documentation for PLplot, a plotting library
plplot-tcl-bin_5.10.0+dfsg-1_i386.deb Tcl/Tk tools for PLplot, a plotting library
plplot-tcl-dev_5.10.0+dfsg-1_i386.deb Tcl/Tk development support for PLplot, a plotting library
plplot-tcl_5.10.0+dfsg-1_i386.deb Tcl/Tk support for PLplot, a plotting library
plplot12-driver-cairo_5.10.0+dfsg-1_i386.deb Scientific plotting library (Cairo driver)
plplot12-driver-qt_5.10.0+dfsg-1_i386.deb Scientific plotting library (qt driver)
plplot12-driver-wxwidgets_5.10.0+dfsg-1_i386.deb Scientific plotting library (wxWidgets driver)
plplot12-driver-xwin_5.10.0+dfsg-1_i386.deb Scientific plotting library (X11 driver)
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