kalign_2.03+20110620-2_i386.deb


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Description

kalign - Global and progressive multiple sequence alignment

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main i386
Package name kalign
Package version 2.03+20110620
Package release 2
Package architecture i386
Package type deb
Installed size 217 B
Download size 76.56 KB
Official Mirror ftp.br.debian.org
Kalign is a command line tool to perform multiple alignment of
biological sequences. It employs the Muth-Manber string-matching
algorithm, to improve both the accuracy and speed of the alignment.
It uses global, progressive alignment approach, enriched by employing
an approximate string-matching algorithm to calculate sequence
distances and by incorporating local matches into the otherwise global
alignment.

Alternatives

Package Version Architecture Repository
kalign_2.03+20110620-2_amd64.deb 2.03+20110620 amd64 Debian Main
kalign - - -

Requires

Name Value
libc6 >= 2.3

Download

Type URL
Binary Package kalign_2.03+20110620-2_i386.deb
Source Package kalign

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install kalign deb package:
    # sudo apt-get install kalign

Files

Path
/etc/bash_completion.d/kalign
/usr/bin/kalign
/usr/share/doc/kalign/README
/usr/share/doc/kalign/changelog.Debian.gz
/usr/share/doc/kalign/copyright
/usr/share/man/man1/kalign.1.gz

Changelog

2012-03-29 - Andreas Tille <tille@debian.org>
kalign (1:2.03+20110620-2) unstable; urgency=low
[ Charles Plessy ]
* renamed debian/upstream-metadata.yaml to debian/upstream
[ Andreas Tille ]
* debian/upstream:
- Added another citation from tasks file
- Fixed Homepage
* debian/source/format: 3.0 (quilt)
* debian/watch: Fixed hint to download URL
* debian/control:
- Fixed Homepage
- Standards-Version: 3.9.3 (no changes needed)
* debian/copyright: Fixed DEP5 issues and verified using
cme fix dpkg-copyright
* debhelper 9 (control+compat)
2011-06-25 - Charles Plessy <plessy@debian.org>
kalign (1:2.03+20110620-1) unstable; urgency=low
* New upstream release.
Using 2.04 as a version number was a mistake of mine, it should have been
called 2.03+20081031 as Upstream sometimes updates the source archive
‘current.tar.gz’ without incrementing the version number.
* Collected information about Upstream in ‘debian/upstream-metadata.yaml’.
* Using Debhelper 8 (debian/compat, debian/control).
* Corrected VCS information in debian/control.
* Enhances: bioperl-run, that has a kalign wrapper (debian/control).
* Incremented Standards-Version to reflect conformance with Policy 3.9.2.
(debian/control, no changes needed).
2009-10-06 - Andreas Tille <tille@debian.org>
kalign (2.04-2) unstable; urgency=low
[ David Paleino ]
* Removed myself from Uploaders
[ Andreas Tille ]
* debian/control:
- Standards-Version: 3.8.3
- debhelper (>= 7.1) to use override facility
* debian/rules:
- removed code to create manpage - just keep the created one
- short rules file using dh
* debian/watch:
- deactivated; upstream does not seem to respond to our request
to enable versioned tarballs - so the watch file makes no sense
Closes: #456479
* Applied patch to enable bash completion.  Thanks to David Paleino
<d.paleino@gmail.com>
Closes: #446047
2009-02-26 - Charles Plessy <plessy@debian.org>
kalign (2.04-1) unstable; urgency=low
* New upstream release.
* debian/copyright made machine-readable.
* debian/rules: replaced deprecated dh_clean -k by dh_prep.
* debian/control:
- Updated my email address (debian/control).
- Checked compliance with Policy 3.8.0 (no changes needed).
- Using debhelper 7 (also in debian/compat).
- Upadated description and moved reference to debian/reference.
* debian/kalign.1*: updated the manual pages.
2008-03-18 - Andreas Tille <tille@debian.org>
kalign (2.03-2) unstable; urgency=low
[ Charles Plessy ]
* debian/control:
- Add Subversion repository URL to debian/control.
- Moved the Homepage: field out from the package's description.
- Enhances: t-coffee.
[ David Paleino ]
* debian/kalign.1 added - manpages are now statically generated
* debian/control:
- B-D updated (see above)
- added myself to Uploaders
- moved XS-Vcs-* fields to Vcs-*
* debian/rules:
- reflecting static build of manpages
- minor changes
* Updated to Standards-Version 3.7.3 (no changes needed)
[ Andreas Tille ]
* Added myself to Uploaders
2007-02-21 - Charles Plessy <charles-debian-nospam@plessy.org>
kalign (2.03-1) unstable; urgency=low
* New upstream release.
* Mended the watch file.
* Updated the manpage.
2006-04-29 - Charles Plessy <charles-debian-nospam@plessy.org>
kalign (1.04-1) unstable; urgency=low
* Initial release Closes: #365344

See Also

Package Description
kalternatives_0.13-2_i386.deb graphical alternatives system configuration tool
kalzium-data_4.14.2-1_all.deb data files for Kalzium
kalzium_4.14.2-1_i386.deb periodic table and chemistry tools
kamailio-autheph-modules_4.2.0-2+deb8u3_i386.deb authentication using ephemeral credentials module for Kamailio
kamailio-berkeley-bin_4.2.0-2+deb8u3_i386.deb Berkeley database module for Kamailio - helper program
kamailio-berkeley-modules_4.2.0-2+deb8u3_i386.deb Berkeley database module for Kamailio
kamailio-carrierroute-modules_4.2.0-2+deb8u3_i386.deb carrierroute module for Kamailio
kamailio-cpl-modules_4.2.0-2+deb8u3_i386.deb CPL module (CPL interpreter engine) for Kamailio
kamailio-dnssec-modules_4.2.0-2+deb8u3_i386.deb contains the dnssec module
kamailio-extra-modules_4.2.0-2+deb8u3_i386.deb extra modules for Kamailio
kamailio-geoip-modules_4.2.0-2+deb8u3_i386.deb contains the geoip module
kamailio-ims-modules_4.2.0-2+deb8u3_i386.deb IMS module for Kamailio
kamailio-java-modules_4.2.0-2+deb8u3_i386.deb contains the app_java module
kamailio-json-modules_4.2.0-2+deb8u3_i386.deb Json parser and jsonrpc modules for Kamailio
kamailio-ldap-modules_4.2.0-2+deb8u3_i386.deb LDAP modules for Kamailio
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