maqview_0.2.5-6_amd64.deb


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Description

maqview - graphical read alignment viewer for short gene sequences

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: maqview
Package version: 0.2.5
Package release: 6
Package architecture: amd64
Package type: deb
Installed size: 631 B
Download size: 293.88 KB
Official Mirror: ftp.br.debian.org
Maqview is graphical read alignment viewer. It is specifically designed for the Maq alignment file and allows you to see the mismatches, base qualities and mapping qualities. Maqview is nothing fancy as Consed or GAP, but just a simple viewer for you to see what happens in a particular region. In comparison to tgap-maq, the text-based read alignment viewer writen by James Bonfield, Maqview is faster and takes up much less memory and disk space in indexing. This is possibly because tgap aims to be a general-purpose viewer but Maqview fully makes use of the fact that a Maq alignment file has already been sorted. Maqview is also efficient in viewing and provides a command-line tool to quickly retrieve any region in an Maq alignment file.

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    Binary package: maqview_0.2.5-6_amd64.deb
    Source package: maqview

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install maqview deb package:
      # sudo apt-get install maqview

    Files

    • /usr/bin/maqindex
    • /usr/bin/maqindex_socks
    • /usr/bin/maqview
    • /usr/bin/zrio
    • /usr/share/doc/maqview/NEWS.gz
    • /usr/share/doc/maqview/README.Debian
    • /usr/share/doc/maqview/README.gz
    • /usr/share/doc/maqview/changelog.Debian.gz
    • /usr/share/doc/maqview/changelog.gz
    • /usr/share/doc/maqview/copyright
    • /usr/share/lintian/overrides/maqview
    • /usr/share/man/man1/maqview.1.gz

    Changelog

    2013-06-25 - Andreas Tille <tille@debian.org> maqview (0.2.5-6) unstable; urgency=low * debian/patches/fix-gcc-4.5.patch: Prevent from trying to link libglut statically. Closes: #713473 * debian/control: cme fix dpkg-control

    2013-05-10 - Andreas Tille <tille@debian.org> maqview (0.2.5-5) unstable; urgency=low * debian/patches/fix-gcc-4.5.patch: Append -Xi to linker libraries Closes: #707426 * debian/control: - Add libxi6 to Build-Depends - Standard-Version: 3.9.4 (no changes needed) - removed DM-Upload-Allowed

    2012-06-08 - Andreas Tille <tille@debian.org> maqview (0.2.5-4) unstable; urgency=low * debian/watch: call debian/get-orig-source * debian/get-orig-source: Enable download directly from uscan * debian/patches/fix-hurd-build.patch: Enable building under GNU/Hurd (Thanks to Cyril Roelandt <tipecaml@gmail.com> for the patch) Closes: #675622

    2012-05-02 - Andreas Tille <tille@debian.org> maqview (0.2.5-3) unstable; urgency=low * debian/use-dpkg-buildflags.patch: Use build flags from environment to enable hardening (Thanks to Simon Ruderich <simon@ruderich.org> for the patch)

    2012-04-27 - Andreas Tille <tille@debian.org> maqview (0.2.5-2) unstable; urgency=low * debian/patches/gcc-4.7.patch: Enable building with g++-4.7 Closes: #667271 * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Fixed Vcs fields - Removed quilt from Build-Depends because it is not needed * debian/rules: Use autoreconf which is more simple and transparent than the manual way to build twice in a row * debian/copyright: DEP5 (verified using `cme fix dpkg-copyright`) * debian/upstream: Reference * debhelper 9 (control+compat) - however hardening flags do not seem to propagate * debian/maqview.lintian-overrides: Different output format from lintian

    2010-11-22 - Andreas Tille <tille@debian.org> maqview (0.2.5-1) unstable; urgency=low * Initial release Closes: #604497

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