mafft_7.205-1_amd64.deb


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Description

mafft - Multiple alignment program for amino acid or nucleotide sequences

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name mafft
Package version 7.205
Package release 1
Package architecture amd64
Package type deb
Installed size 7.52 KB
Download size 757.28 KB
Official Mirror ftp.br.debian.org
MAFFT is a multiple sequence alignment program which offers three
accuracy-oriented methods:
* L-INS-i (probably most accurate; recommended for <200 sequences;
iterative refinement method incorporating local pairwise alignment
information),
* G-INS-i (suitable for sequences of similar lengths; recommended for
<200 sequences; iterative refinement method incorporating global
pairwise alignment information),
* E-INS-i (suitable for sequences containing large unalignable regions;
recommended for <200 sequences),
and five speed-oriented methods:
* FFT-NS-i (iterative refinement method; two cycles only),
* FFT-NS-i (iterative refinement method; max. 1000 iterations),
* FFT-NS-2 (fast; progressive method),
* FFT-NS-1 (very fast; recommended for >2000 sequences; progressive
method with a rough guide tree),
* NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive
method with the PartTree algorithm).

Alternatives

Package Version Architecture Repository
mafft_7.205-1_i386.deb 7.205 i386 Debian Main
mafft - - -

Requires

Name Value
libc6 >= 2.14
perl -

Download

Type URL
Binary Package mafft_7.205-1_amd64.deb
Source Package mafft

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install mafft deb package:
    # sudo apt-get install mafft

Files

Path
/usr/bin/mafft
/usr/bin/mafft-homologs
/usr/lib/mafft/bin/einsi
/usr/lib/mafft/bin/fftns
/usr/lib/mafft/bin/fftnsi
/usr/lib/mafft/bin/ginsi
/usr/lib/mafft/bin/linsi
/usr/lib/mafft/bin/mafft
/usr/lib/mafft/bin/mafft-distance
/usr/lib/mafft/bin/mafft-einsi
/usr/lib/mafft/bin/mafft-fftns
/usr/lib/mafft/bin/mafft-fftnsi
/usr/lib/mafft/bin/mafft-ginsi
/usr/lib/mafft/bin/mafft-homologs.rb
/usr/lib/mafft/bin/mafft-linsi
/usr/lib/mafft/bin/mafft-nwns
/usr/lib/mafft/bin/mafft-nwnsi
/usr/lib/mafft/bin/mafft-profile
/usr/lib/mafft/bin/mafft-qinsi
/usr/lib/mafft/bin/mafft-randomcore.rb
/usr/lib/mafft/bin/mafft-xinsi
/usr/lib/mafft/bin/nwns
/usr/lib/mafft/bin/nwnsi
/usr/lib/mafft/lib/mafft/addsingle
/usr/lib/mafft/lib/mafft/contrafoldwrap
/usr/lib/mafft/lib/mafft/countlen
/usr/lib/mafft/lib/mafft/disttbfast
/usr/lib/mafft/lib/mafft/dndblast
/usr/lib/mafft/lib/mafft/dndfast7
/usr/lib/mafft/lib/mafft/dndpre
/usr/lib/mafft/lib/mafft/dvtditr
/usr/lib/mafft/lib/mafft/f2cl
/usr/lib/mafft/lib/mafft/getlag
/usr/lib/mafft/lib/mafft/mafft-distance
/usr/lib/mafft/lib/mafft/mafft-profile
/usr/lib/mafft/lib/mafft/mafftash_premafft.pl
/usr/lib/mafft/lib/mafft/makedirectionlist
/usr/lib/mafft/lib/mafft/mccaskillwrap
/usr/lib/mafft/lib/mafft/multi2hat3s
/usr/lib/mafft/lib/mafft/pair2hat3s
/usr/lib/mafft/lib/mafft/pairash
/usr/lib/mafft/lib/mafft/pairlocalalign
/usr/lib/mafft/lib/mafft/regtable2seq
/usr/lib/mafft/lib/mafft/replaceu
/usr/lib/mafft/lib/mafft/restoreu
/usr/lib/mafft/lib/mafft/score
/usr/lib/mafft/lib/mafft/seekquencer_premafft.pl
/usr/lib/mafft/lib/mafft/seq2regtable
/usr/lib/mafft/lib/mafft/setcore
/usr/lib/mafft/lib/mafft/setdirection
/usr/lib/mafft/lib/mafft/sextet5
/usr/lib/mafft/lib/mafft/splittbfast
/usr/lib/mafft/lib/mafft/tbfast
/usr/lib/mafft/lib/mafft/version
/usr/share/doc/mafft/changelog.Debian.gz
/usr/share/doc/mafft/copyright
/usr/share/doc/mafft/test/sample
/usr/share/doc/mafft/test/sample.allowshift
/usr/share/doc/mafft/test/sample.dpparttree
/usr/share/doc/mafft/test/sample.fftns2
/usr/share/doc/mafft/test/sample.fftnsi
/usr/share/doc/mafft/test/sample.gins1
/usr/share/doc/mafft/test/sample.ginsi
/usr/share/doc/mafft/test/sample.ginsi.allowshift
/usr/share/doc/mafft/test/sample.lins1
/usr/share/doc/mafft/test/sample.linsi
/usr/share/doc/mafft/test/sample.parttree
/usr/share/doc/mafft/test/samplerna
/usr/share/doc/mafft/test/samplerna.qinsi
/usr/share/doc/mafft/test/samplerna.xinsi
/usr/share/man/man1/einsi.1.gz
/usr/share/man/man1/fftns.1.gz
/usr/share/man/man1/fftnsi.1.gz
/usr/share/man/man1/ginsi.1.gz
/usr/share/man/man1/linsi.1.gz
/usr/share/man/man1/mafft-einsi.1.gz
/usr/share/man/man1/mafft-fftns.1.gz
/usr/share/man/man1/mafft-fftnsi.1.gz
/usr/share/man/man1/mafft-ginsi.1.gz
/usr/share/man/man1/mafft-homologs.1.gz
/usr/share/man/man1/mafft-linsi.1.gz
/usr/share/man/man1/mafft-profile.1.gz
/usr/share/man/man1/mafft.1.gz

Changelog

2014-10-23 - Andreas Tille <tille@debian.org>
mafft (7.205-1) unstable; urgency=medium
* New upstream version
2014-10-05 - Charles Plessy <plessy@debian.org>
mafft (7.187-1) unstable; urgency=medium
* New upstream release.
* Conforms to Policy 3.9.6.
2014-08-04 - Andreas Tille <tille@debian.org>
mafft (7.164-1) unstable; urgency=medium
* New upstream version
2014-07-13 - Charles Plessy <plessy@debian.org>
mafft (7.158-1) unstable; urgency=medium
* New upstream release.
2014-06-18 - Charles Plessy <plessy@debian.org>
mafft (7.157-1) unstable; urgency=medium
* New upstream release. 
* debian/control
- Added substitution variable ${perl:Depends}, used by Debhelper.
- Recommend libwww-perl used by the script ‘seekquencer_premafft.pl’.
2014-04-12 - Charles Plessy <plessy@debian.org>
mafft (7.149-1) unstable; urgency=medium
* New upstream release. 
2014-03-30 - Charles Plessy <plessy@debian.org>
mafft (7.147-1) unstable; urgency=medium
* New upstream release.
2014-01-19 - Charles Plessy <plessy@debian.org>
mafft (7.130-1) unstable; urgency=low
* New upstream release.
* Correct ‘XS-Testsuite’ to ‘Testsuite’ in debian/control.
2013-11-30 - Charles Plessy <plessy@debian.org>
mafft (7.127-1) unstable; urgency=low
* New upstream release.
* debian/tests/with-example-data: Don't write progress to stderr on success.
Closes: #728190, thanks to Martin Pitt <martin.pitt@ubuntu.com>.
* Conforms with Policy 3.9.5.
* Pass CPPFLAGS within CFLAGS.
2013-10-16 - Charles Plessy <plessy@debian.org>
mafft (7.123-1) unstable; urgency=low
* New upstream version.
* Correct watch file, which was downloading the non-free version.
This error did not affect the current stable release of Debian.
* debian/tests/with-example-data: disable multithreading to stabilise output.

See Also

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magics++_2.22.7.dfsg.1-4_amd64.deb Executables for the magics++ library
magit_1.2.1-1_all.deb Emacs interface for Git
mah-jong_1.11-2_amd64.deb Original Mah-Jong game
mahjongg_3.14.1-1_all.deb classic Eastern tile game for GNOME (transitional package)
mail-expire_0.7_all.deb Utility to extract outdated messages from mbox files
mail-notification-evolution_5.4.dfsg.1-13_amd64.deb evolution support for mail notification
mail-notification_5.4.dfsg.1-13_amd64.deb mail notification in system tray
mailagent_3.1-78-1_amd64.deb automatic mail-processing tool and filter
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