macs_2.0.9.1-1_amd64.deb


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Description

macs - Model-based Analysis of ChIP-Seq on short reads sequencers

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: macs
Package version: 2.0.9.1
Package release: 1
Package architecture: amd64
Package type: deb
Installed size: 1.61 KB
Download size: 472.71 KB
Official Mirror: ftp.br.debian.org
MACS empirically models the length of the sequenced ChIP fragments, which tends to be shorter than sonication or library construction size estimates, and uses it to improve the spatial resolution of predicted binding sites. MACS also uses a dynamic Poisson distribution to effectively capture local biases in the genome sequence, allowing for more sensitive and robust prediction. MACS compares favorably to existing ChIP-Seq peak-finding algorithms, is publicly available open source, and can be used for ChIP-Seq with or without control samples.

Alternatives

    Download

    Binary package: macs_2.0.9.1-1_amd64.deb
    Source package: macs

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install macs deb package:
      # sudo apt-get install macs

    Files

    • /usr/bin/bdgbroadcall
    • /usr/bin/bdgcmp
    • /usr/bin/bdgdiff
    • /usr/bin/bdgpeakcall
    • /usr/bin/filterdup
    • /usr/bin/macs2
    • /usr/bin/macs2diff
    • /usr/bin/randsample
    • /usr/lib/pyshared/python2.7/MACS2/cPeakDetect.so
    • /usr/lib/pyshared/python2.7/MACS2/cPileup.so
    • /usr/lib/pyshared/python2.7/MACS2/cProb.so
    • /usr/lib/pyshared/python2.7/MACS2/IO/cBedGraph.so
    • /usr/lib/pyshared/python2.7/MACS2/IO/cCompositeScoreTrack.so
    • /usr/lib/pyshared/python2.7/MACS2/IO/cFixWidthTrack.so
    • /usr/lib/pyshared/python2.7/MACS2/IO/cParser.so
    • /usr/lib/pyshared/python2.7/MACS2/IO/cPeakIO.so
    • /usr/lib/pyshared/python2.7/MACS2/IO/cScoreTrack.so
    • /usr/lib/python2.7/dist-packages/MACS-2.0.9.egg-info
    • /usr/lib/python2.7/dist-packages/MACS2/Constants.py
    • /usr/lib/python2.7/dist-packages/MACS2/OptValidator.py
    • /usr/lib/python2.7/dist-packages/MACS2/OutputWriter.py
    • /usr/lib/python2.7/dist-packages/MACS2/PeakModel.py
    • /usr/lib/python2.7/dist-packages/MACS2/__init__.py
    • /usr/lib/python2.7/dist-packages/MACS2/cPeakDetect.so
    • /usr/lib/python2.7/dist-packages/MACS2/cPileup.so
    • /usr/lib/python2.7/dist-packages/MACS2/cProb.so
    • /usr/lib/python2.7/dist-packages/MACS2/IO/BinKeeper.py
    • /usr/lib/python2.7/dist-packages/MACS2/IO/WiggleIO.py
    • /usr/lib/python2.7/dist-packages/MACS2/IO/__init__.py
    • /usr/lib/python2.7/dist-packages/MACS2/IO/bedGraphIO.py
    • /usr/lib/python2.7/dist-packages/MACS2/IO/cBedGraph.so
    • /usr/lib/python2.7/dist-packages/MACS2/IO/cCompositeScoreTrack.so
    • /usr/lib/python2.7/dist-packages/MACS2/IO/cFixWidthTrack.so
    • /usr/lib/python2.7/dist-packages/MACS2/IO/cParser.so
    • /usr/lib/python2.7/dist-packages/MACS2/IO/cPeakIO.so
    • /usr/lib/python2.7/dist-packages/MACS2/IO/cScoreTrack.so
    • /usr/share/doc/macs/README.gz
    • /usr/share/doc/macs/changelog.Debian.gz
    • /usr/share/doc/macs/changelog.gz
    • /usr/share/doc/macs/copyright
    • /usr/share/man/man1/bdgbroadcall.1.gz
    • /usr/share/man/man1/bdgcmp.1.gz
    • /usr/share/man/man1/bdgdiff.1.gz
    • /usr/share/man/man1/bdgpeakcall.1.gz
    • /usr/share/man/man1/filterdup.1.gz
    • /usr/share/man/man1/macs2.1.gz
    • /usr/share/man/man1/macs2diff.1.gz
    • /usr/share/man/man1/randsample.1.gz
    • /usr/share/pyshared/MACS-2.0.9.egg-info
    • /usr/share/pyshared/MACS2/Constants.py
    • /usr/share/pyshared/MACS2/OptValidator.py
    • /usr/share/pyshared/MACS2/OutputWriter.py
    • /usr/share/pyshared/MACS2/PeakModel.py
    • /usr/share/pyshared/MACS2/__init__.py
    • /usr/share/pyshared/MACS2/IO/BinKeeper.py
    • /usr/share/pyshared/MACS2/IO/WiggleIO.py
    • /usr/share/pyshared/MACS2/IO/__init__.py
    • /usr/share/pyshared/MACS2/IO/bedGraphIO.py

    Changelog

    2012-12-19 - Andreas Tille <tille@debian.org> macs (2.0.9.1-1) unstable; urgency=low * Initial upload to Debian (Closes: #696331) * debian/control: - Adaptations to Debian Med team maintenance - X-Python-Version: >=2.7 because build fails for Python 2.6 - Standards-Version: 3.9.4 (no changes needed) - Priority: optional * debian/watch: Removed useless comments * debian/README.*: Removed unused dh-make templates * debian/copyright: Added some missing information * debian/rules: - Removed useless dh-make comment - use dh_python2 - use help2man to create manpages * debhelper 9 (control+compat)

    2012-01-05 - Tim Booth <tbooth@ceh.ac.uk> macs (2.0.9.1-1ubuntu3) lucid; urgency=low * Fix typo in debian/rules

    2012-01-05 - H. Soon Gweon (Key for package building) <soonio@gmail.com> macs (2.0.9.1-1ubuntu2) lucid; urgency=low * Package for PPA * Packaged from version 2.0.9-1 * Changed debian/rules to override dh_auto_clean to remove *.c files

    2012-01-05 - H. Soon Gweon (Key for package building) <soonio@gmail.com> macs (2.0.9.1-1) unstable; urgency=low * Initial packaging attempt

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