macs_2.0.9.1-1_amd64.deb


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Description

macs - Model-based Analysis of ChIP-Seq on short reads sequencers

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name macs
Package version 2.0.9.1
Package release 1
Package architecture amd64
Package type deb
Installed size 1.61 KB
Download size 472.71 KB
Official Mirror ftp.br.debian.org
MACS empirically models the length of the sequenced ChIP fragments, which
tends to be shorter than sonication or library construction size estimates,
and uses it to improve the spatial resolution of predicted binding sites.
MACS also uses a dynamic Poisson distribution to effectively capture local
biases in the genome sequence, allowing for more sensitive and robust
prediction. MACS compares favorably to existing ChIP-Seq peak-finding
algorithms, is publicly available open source, and can be used for ChIP-Seq
with or without control samples.

Alternatives

Package Version Architecture Repository
macs_2.0.9.1-1_i386.deb 2.0.9.1 i386 Debian Main
macs - - -

Requires

Name Value
libc6 >= 2.4
python >= 2.7
python << 2.8
python-numpy -

Download

Type URL
Binary Package macs_2.0.9.1-1_amd64.deb
Source Package macs

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install macs deb package:
    # sudo apt-get install macs

Files

Path
/usr/bin/bdgbroadcall
/usr/bin/bdgcmp
/usr/bin/bdgdiff
/usr/bin/bdgpeakcall
/usr/bin/filterdup
/usr/bin/macs2
/usr/bin/macs2diff
/usr/bin/randsample
/usr/lib/pyshared/python2.7/MACS2/cPeakDetect.so
/usr/lib/pyshared/python2.7/MACS2/cPileup.so
/usr/lib/pyshared/python2.7/MACS2/cProb.so
/usr/lib/pyshared/python2.7/MACS2/IO/cBedGraph.so
/usr/lib/pyshared/python2.7/MACS2/IO/cCompositeScoreTrack.so
/usr/lib/pyshared/python2.7/MACS2/IO/cFixWidthTrack.so
/usr/lib/pyshared/python2.7/MACS2/IO/cParser.so
/usr/lib/pyshared/python2.7/MACS2/IO/cPeakIO.so
/usr/lib/pyshared/python2.7/MACS2/IO/cScoreTrack.so
/usr/lib/python2.7/dist-packages/MACS-2.0.9.egg-info
/usr/lib/python2.7/dist-packages/MACS2/Constants.py
/usr/lib/python2.7/dist-packages/MACS2/OptValidator.py
/usr/lib/python2.7/dist-packages/MACS2/OutputWriter.py
/usr/lib/python2.7/dist-packages/MACS2/PeakModel.py
/usr/lib/python2.7/dist-packages/MACS2/__init__.py
/usr/lib/python2.7/dist-packages/MACS2/cPeakDetect.so
/usr/lib/python2.7/dist-packages/MACS2/cPileup.so
/usr/lib/python2.7/dist-packages/MACS2/cProb.so
/usr/lib/python2.7/dist-packages/MACS2/IO/BinKeeper.py
/usr/lib/python2.7/dist-packages/MACS2/IO/WiggleIO.py
/usr/lib/python2.7/dist-packages/MACS2/IO/__init__.py
/usr/lib/python2.7/dist-packages/MACS2/IO/bedGraphIO.py
/usr/lib/python2.7/dist-packages/MACS2/IO/cBedGraph.so
/usr/lib/python2.7/dist-packages/MACS2/IO/cCompositeScoreTrack.so
/usr/lib/python2.7/dist-packages/MACS2/IO/cFixWidthTrack.so
/usr/lib/python2.7/dist-packages/MACS2/IO/cParser.so
/usr/lib/python2.7/dist-packages/MACS2/IO/cPeakIO.so
/usr/lib/python2.7/dist-packages/MACS2/IO/cScoreTrack.so
/usr/share/doc/macs/README.gz
/usr/share/doc/macs/changelog.Debian.gz
/usr/share/doc/macs/changelog.gz
/usr/share/doc/macs/copyright
/usr/share/man/man1/bdgbroadcall.1.gz
/usr/share/man/man1/bdgcmp.1.gz
/usr/share/man/man1/bdgdiff.1.gz
/usr/share/man/man1/bdgpeakcall.1.gz
/usr/share/man/man1/filterdup.1.gz
/usr/share/man/man1/macs2.1.gz
/usr/share/man/man1/macs2diff.1.gz
/usr/share/man/man1/randsample.1.gz
/usr/share/pyshared/MACS-2.0.9.egg-info
/usr/share/pyshared/MACS2/Constants.py
/usr/share/pyshared/MACS2/OptValidator.py
/usr/share/pyshared/MACS2/OutputWriter.py
/usr/share/pyshared/MACS2/PeakModel.py
/usr/share/pyshared/MACS2/__init__.py
/usr/share/pyshared/MACS2/IO/BinKeeper.py
/usr/share/pyshared/MACS2/IO/WiggleIO.py
/usr/share/pyshared/MACS2/IO/__init__.py
/usr/share/pyshared/MACS2/IO/bedGraphIO.py

Changelog

2012-12-19 - Andreas Tille <tille@debian.org>
macs (2.0.9.1-1) unstable; urgency=low
* Initial upload to Debian (Closes: #696331)
* debian/control:
- Adaptations to Debian Med team maintenance
- X-Python-Version: >=2.7 because build fails
for Python 2.6
- Standards-Version: 3.9.4 (no changes needed)
- Priority: optional
* debian/watch: Removed useless comments
* debian/README.*: Removed unused dh-make templates
* debian/copyright: Added some missing information
* debian/rules:
- Removed useless dh-make comment
- use dh_python2
- use help2man to create manpages
* debhelper 9 (control+compat)
2012-01-05 - Tim Booth <tbooth@ceh.ac.uk>
macs (2.0.9.1-1ubuntu3) lucid; urgency=low
* Fix typo in debian/rules
2012-01-05 - H. Soon Gweon (Key for package building) <soonio@gmail.com>
macs (2.0.9.1-1ubuntu2) lucid; urgency=low
* Package for PPA
* Packaged from version 2.0.9-1
* Changed debian/rules to override dh_auto_clean to remove *.c files 
2012-01-05 - H. Soon Gweon (Key for package building) <soonio@gmail.com>
macs (2.0.9.1-1) unstable; urgency=low
* Initial packaging attempt

See Also

Package Description
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magicmaze_1.4.3.6+dfsg-2_all.deb rescue the maiden while avoiding the monsters
magicor-data_1.1-4_all.deb data files for the magicor puzzle game
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