ltrsift_1.0.2-1_amd64.deb


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Description

ltrsift - postprocessing and classification of LTR retrotransposons

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: ltrsift
Package version: 1.0.2
Package release: 1
Package architecture: amd64
Package type: deb
Installed size: 408 B
Download size: 123.99 KB
Official Mirror: ftp.br.debian.org
LTRsift is a graphical desktop tool for semi-automatic postprocessing of de novo predicted LTR retrotransposon annotations, such as the ones generated by LTRharvest and LTRdigest. Its user-friendly interface displays LTR retrotransposon candidates, their putative families and their internal structure in a hierarchical fashion, allowing the user to "sift" through the sometimes large results of de novo prediction software. It also offers customizable filtering and classification functionality.

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    Download

    Binary package: ltrsift_1.0.2-1_amd64.deb
    Source package: ltrsift

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install ltrsift deb package:
      # sudo apt-get install ltrsift

    Files

    • /usr/bin/ltrsift
    • /usr/bin/ltrsift_encode
    • /usr/share/applications/ltrsift.desktop
    • /usr/share/doc/ltrsift/README
    • /usr/share/doc/ltrsift/VERSION
    • /usr/share/doc/ltrsift/changelog.Debian.gz
    • /usr/share/doc/ltrsift/changelog.gz
    • /usr/share/doc/ltrsift/copyright
    • /usr/share/icons/hicolor/scalable/apps/ltrsift.svg
    • /usr/share/ltrsift/filters/filter_full.lua
    • /usr/share/ltrsift/filters/filter_protein_match.lua
    • /usr/share/ltrsift/filters/filter_ref_match.lua
    • /usr/share/man/man1/ltrsift.1.gz
    • /usr/share/man/man1/ltrsift_encode.1.gz
    • /usr/share/menu/ltrsift
    • /usr/share/pixmaps/ltrsift.xpm

    Changelog

    2013-03-11 - Sascha Steinbiss <steinbiss@zbh.uni-hamburg.de> ltrsift (1.0.2-1) unstable; urgency=low * New upstream release

    2013-03-09 - Sascha Steinbiss <steinbiss@zbh.uni-hamburg.de> ltrsift (1.0.1-2) unstable; urgency=low * enable optimization and hardening

    2012-10-06 - Sascha Steinbiss <steinbiss@zbh.uni-hamburg.de> ltrsift (1.0.1-1) unstable; urgency=low * Initial release (Closes: #689961)

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