loki - MCMC linkage analysis on general pedigrees

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: loki
Package version:
Package release: 5
Package architecture: amd64
Package type: deb
Installed size: 850 B
Download size: 334.42 KB
Official Mirror: ftp.br.debian.org
Performs Markov chain Monte Carlo multipoint linkage analysis on large, complex pedigrees. The current package supports analyses on quantitative traits only, although this restriction will be lifted in later versions. Joint estimation of QTL number, position and effects uses Reversible Jump MCMC. It is also possible to perform affected only IBD sharing analyses.




    Binary package: loki_2.4.7.4-5_amd64.deb
    Source package: loki

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install loki deb package:
      # sudo apt-get install loki


    • /usr/bin/hist
    • /usr/bin/loki
    • /usr/bin/loki_count
    • /usr/bin/loki_dist
    • /usr/bin/loki_ext
    • /usr/bin/loki_freq
    • /usr/bin/loki_sort_error
    • /usr/bin/prep
    • /usr/bin/qavg
    • /usr/share/doc/loki/README
    • /usr/share/doc/loki/README.Debian
    • /usr/share/doc/loki/README.known_systems
    • /usr/share/doc/loki/README.multiple_records
    • /usr/share/doc/loki/README.parallel_runs
    • /usr/share/doc/loki/changelog.Debian.gz
    • /usr/share/doc/loki/changelog.gz
    • /usr/share/doc/loki/copyright
    • /usr/share/man/man1/check_het.1.gz
    • /usr/share/man/man1/hist.1.gz
    • /usr/share/man/man1/loki.1.gz
    • /usr/share/man/man1/loki_count.1.gz
    • /usr/share/man/man1/loki_dist.1.gz
    • /usr/share/man/man1/loki_ext.1.gz
    • /usr/share/man/man1/loki_freq.1.gz
    • /usr/share/man/man1/loki_sort_error.1.gz
    • /usr/share/man/man1/prep.1.gz
    • /usr/share/man/man1/qavg.1.gz


    2013-10-28 - Andreas Tille <tille@debian.org> loki ( unstable; urgency=low * debian/upstream: added citation information * debian/control: - Standards-Version: 3.9.4 (no changes needed) - cme fix dpkg-control - Fixed Vcs fields - Depends: ${misc:Depends} - Canonical Vcs URLs - Removed Homepage field since homepage vanished from the net * debian/source/format: 3.0 (quilt) * debian/copyright: DEP5 * debian/rules: switch from cdbs to dh * debhelper 9 to enable hardening flags * debian/patches/hardening.patch

    2008-03-25 - Andreas Tille <tille@debian.org> loki ( unstable; urgency=low * Fixed lokisrc/param_lex.l and regenerated C file to solve problem with redefined __unused on 64 bit systems (Thanks to brian m. carlson <sandals@crustytoothpaste.ath.cx>) Closes: #409370

    2008-03-23 - Andreas Tille <tille@debian.org> loki ( unstable; urgency=low * Fixed install target to install to debian/tmp correctly Closes: #472320

    2008-03-20 - Andreas Tille <tille@debian.org> loki ( unstable; urgency=low * Debhelper 5 * Standards-Version: 3.7.3 (no changes necessary) * Switch to cdbs * Use quilt and patches * Removed [Biology] from short description * Added hint to long description that the project is dead and homepage vanished * Group maintenance according to Debian-Med policy * Added Vcs-Fields * Added Homepage tag (with download page of latest upstream source, upstream seems to be dead since 1995) * Removed watch file because project is dead upstream so watch makes no sense * Use a single manpage and symlinks instead of several copies of the very same manpage file * Remove menu entry that just calls man loki * Fixed Section in doc-base files * Moced doc package to section doc (as suggested by lintian)

    2004-09-24 - Carleos Artime <carleos@uniovi.es> loki ( unstable; urgency=low * New upstream release closes: #254166 * Added a hint about loki-doc package in README.Debian. * Standards-Version: 3.6.1

    2003-04-25 - Carleos Artime <carleos@pinon.ccu.uniovi.es> loki (2.4.6-1) unstable; urgency=low * First official release closes: #155071 * New upstream release. * Changed section in debian/control from "misc" to "science". * Added homepage to package description in debian/control. * Split up into two packages (loki, loki-doc). * Changes by Andreas Tille <tille@debian.org> - Added "Suggests: loki-doc" to loki - Changed "Depends" to "Suggests: loki" in loki-doc to enable reading online documentation without installing the binary package - used debian/loki-doc.docs and dh_installdocs to install documentation - moved debian/lokifaq.doc-base to debian/loki-doc.doc-base.lokifaq and debian/lokimanual.doc-base debian/loki-doc.doc-base.lokimanual - Added debian/loci-doc.README.Debian to give a hint at the LaTeX source of the documentation.

    2003-04-05 - Carleos Artime <carleos@pinon.ccu.uniovi.es> loki (2.4.5-1) unstable; urgency=low * Initial Release. * Having read "man dh_installdocs", split "debian/doc-base" in two files. * Included a "menu" entry that simply shows loki's man page. * Renamed utils/loki_ext.in to utils/ext.in. * Modified utils/Makefile.in to rename executables: count.pl, dist.pl, freq.pl, loki_ext.pl, sort_error.pl, are now loki_count, loki_dist, loki_freq, loki_ext, and loki_sort_error. * Fixed copyright-lists-upstream-authors-with-dh_make-boilerplate bug by just removing (s) behind Author * Appended upstream COPYRIGHT to debian/copyright to get it included into the Debian package * Standards-Version: 3.5.9