loki_2.4.7.4-5_amd64.deb


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Description

loki - MCMC linkage analysis on general pedigrees

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name loki
Package version 2.4.7.4
Package release 5
Package architecture amd64
Package type deb
Installed size 850 B
Download size 334.42 KB
Official Mirror ftp.br.debian.org
Performs Markov chain Monte Carlo multipoint linkage analysis on large,
complex pedigrees.  The current package supports analyses on quantitative
traits only, although this restriction will be lifted in later versions.
Joint estimation of QTL number, position and effects uses Reversible Jump
MCMC. It is also possible to perform affected only IBD sharing analyses.

Alternatives

Package Version Architecture Repository
loki_2.4.7.4-5_i386.deb 2.4.7.4 i386 Debian Main
loki - - -

Requires

Name Value
libc6 >= 2.14

Download

Type URL
Binary Package loki_2.4.7.4-5_amd64.deb
Source Package loki

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install loki deb package:
    # sudo apt-get install loki

Files

Path
/usr/bin/hist
/usr/bin/loki
/usr/bin/loki_count
/usr/bin/loki_dist
/usr/bin/loki_ext
/usr/bin/loki_freq
/usr/bin/loki_sort_error
/usr/bin/prep
/usr/bin/qavg
/usr/share/doc/loki/README
/usr/share/doc/loki/README.Debian
/usr/share/doc/loki/README.known_systems
/usr/share/doc/loki/README.multiple_records
/usr/share/doc/loki/README.parallel_runs
/usr/share/doc/loki/changelog.Debian.gz
/usr/share/doc/loki/changelog.gz
/usr/share/doc/loki/copyright
/usr/share/man/man1/check_het.1.gz
/usr/share/man/man1/hist.1.gz
/usr/share/man/man1/loki.1.gz
/usr/share/man/man1/loki_count.1.gz
/usr/share/man/man1/loki_dist.1.gz
/usr/share/man/man1/loki_ext.1.gz
/usr/share/man/man1/loki_freq.1.gz
/usr/share/man/man1/loki_sort_error.1.gz
/usr/share/man/man1/prep.1.gz
/usr/share/man/man1/qavg.1.gz

Changelog

2013-10-28 - Andreas Tille <tille@debian.org>
loki (2.4.7.4-5) unstable; urgency=low
* debian/upstream: added citation information
* debian/control:
- Standards-Version: 3.9.4 (no changes needed)
- cme fix dpkg-control
- Fixed Vcs fields
- Depends: ${misc:Depends}
- Canonical Vcs URLs
- Removed Homepage field since homepage vanished from the net
* debian/source/format: 3.0 (quilt)
* debian/copyright: DEP5
* debian/rules: switch from cdbs to dh
* debhelper 9 to enable hardening flags
* debian/patches/hardening.patch
2008-03-25 - Andreas Tille <tille@debian.org>
loki (2.4.7.4-4) unstable; urgency=low
* Fixed lokisrc/param_lex.l and regenerated C file to solve problem
with redefined __unused on 64 bit systems (Thanks to brian m. carlson
<sandals@crustytoothpaste.ath.cx>)
Closes: #409370
2008-03-23 - Andreas Tille <tille@debian.org>
loki (2.4.7.4-3) unstable; urgency=low
* Fixed install target to install to debian/tmp correctly
Closes: #472320
2008-03-20 - Andreas Tille <tille@debian.org>
loki (2.4.7.4-2) unstable; urgency=low
* Debhelper 5
* Standards-Version: 3.7.3 (no changes necessary)
* Switch to cdbs
* Use quilt and patches
* Removed [Biology] from short description
* Added hint to long description that the project is dead
and homepage vanished
* Group maintenance according to Debian-Med policy
* Added Vcs-Fields
* Added Homepage tag (with download page of latest upstream source,
upstream seems to be dead since 1995)        
* Removed watch file because project is dead upstream so watch
makes no sense
* Use a single manpage and symlinks instead of several copies of the
very same manpage file
* Remove menu entry that just calls man loki
* Fixed Section in doc-base files
* Moced doc package to section doc (as suggested by lintian)
2004-09-24 - Carleos Artime <carleos@uniovi.es>
loki (2.4.7.4-1) unstable; urgency=low
* New upstream release
closes: #254166
* Added a hint about loki-doc package in README.Debian.
* Standards-Version: 3.6.1
2003-04-25 - Carleos Artime <carleos@pinon.ccu.uniovi.es>
loki (2.4.6-1) unstable; urgency=low
* First official release
closes: #155071
* New upstream release.
* Changed section in debian/control from "misc" to "science".
* Added homepage to package description in debian/control.
* Split up into two packages (loki, loki-doc).
* Changes by Andreas Tille <tille@debian.org>
- Added "Suggests: loki-doc" to loki
- Changed "Depends" to "Suggests: loki" in loki-doc to enable
reading online documentation without installing the binary package
- used debian/loki-doc.docs and dh_installdocs to install documentation
- moved debian/lokifaq.doc-base to debian/loki-doc.doc-base.lokifaq and
debian/lokimanual.doc-base debian/loki-doc.doc-base.lokimanual
- Added debian/loci-doc.README.Debian to give a hint at the LaTeX
source of the documentation.
2003-04-05 - Carleos Artime <carleos@pinon.ccu.uniovi.es>
loki (2.4.5-1) unstable; urgency=low
* Initial Release.
* Having read "man dh_installdocs", split "debian/doc-base" in two files.
* Included a "menu" entry that simply shows loki's man page.
* Renamed utils/loki_ext.in to utils/ext.in.  
* Modified utils/Makefile.in to rename executables: count.pl, dist.pl,
freq.pl, loki_ext.pl, sort_error.pl, are now loki_count, loki_dist,
loki_freq, loki_ext, and loki_sort_error.
* Fixed copyright-lists-upstream-authors-with-dh_make-boilerplate bug
by just removing (s) behind Author
* Appended upstream COPYRIGHT to debian/copyright to get it included
into the Debian package
* Standards-Version: 3.5.9

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