logol_1.7.0-2_all.deb


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Description

logol - Pattern matching tool using Logol language

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: logol
Package version: 1.7.0
Package release: 2
Package architecture: all
Package type: deb
Installed size: 1.46 KB
Download size: 1.12 MB
Official Mirror: ftp.br.debian.org
Logol is a pattern matching tool using the Logol language. It searches with a specific grammar a pattern in small or large sequence (dna, rna, protein). It provides complete result matching with the original grammar in the results.

Alternatives

    Download

    Binary package: logol_1.7.0-2_all.deb
    Source package: logol

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install logol deb package:
      # sudo apt-get install logol

    Files

    • /etc/logol/logol.properties
    • /usr/bin/LogolExec
    • /usr/bin/LogolMultiExec
    • /usr/share/doc-base/logol
    • /usr/share/doc/logol/LogolGrammar.txt
    • /usr/share/doc/logol/README.Debian
    • /usr/share/doc/logol/README.txt
    • /usr/share/doc/logol/SWI-README
    • /usr/share/doc/logol/changelog.Debian.gz
    • /usr/share/doc/logol/changelog.gz
    • /usr/share/doc/logol/copyright
    • /usr/share/doc/logol/logol-usage.pdf.gz
    • /usr/share/doc/logol/logolParser.pdf.gz
    • /usr/share/doc/logol/tutorial.pdf.gz
    • /usr/share/doc/logol/examples/1799.fasta
    • /usr/share/doc/logol/examples/1799.logol
    • /usr/share/doc/logol/examples/1800.fasta
    • /usr/share/doc/logol/examples/1800.logol
    • /usr/share/doc/logol/examples/1806.logol
    • /usr/share/doc/logol/examples/2235.fasta
    • /usr/share/doc/logol/examples/2235.logol
    • /usr/share/doc/logol/examples/2242.fasta
    • /usr/share/doc/logol/examples/2242.logol
    • /usr/share/doc/logol/examples/2243.fasta
    • /usr/share/doc/logol/examples/2243.logol
    • /usr/share/doc/logol/examples/2244.fasta
    • /usr/share/doc/logol/examples/2244.logol
    • /usr/share/doc/logol/examples/all.lgd
    • /usr/share/doc/logol/examples/all.logol
    • /usr/share/doc/logol/examples/alphabet.logol
    • /usr/share/doc/logol/examples/ambiguous.logol
    • /usr/share/doc/logol/examples/anyspacer.lgd
    • /usr/share/doc/logol/examples/anyspacer.logol
    • /usr/share/doc/logol/examples/begin.lgd
    • /usr/share/doc/logol/examples/begin.logol
    • /usr/share/doc/logol/examples/begin_postpone.logol
    • /usr/share/doc/logol/examples/call_model.logol
    • /usr/share/doc/logol/examples/call_model2.logol
    • /usr/share/doc/logol/examples/call_model3.logol
    • /usr/share/doc/logol/examples/call_model4.logol
    • /usr/share/doc/logol/examples/comment.logol
    • /usr/share/doc/logol/examples/comment2.logol
    • /usr/share/doc/logol/examples/complement.logol
    • /usr/share/doc/logol/examples/complex.logol
    • /usr/share/doc/logol/examples/cost_postpone.logol
    • /usr/share/doc/logol/examples/end.logol
    • /usr/share/doc/logol/examples/external.logol
    • /usr/share/doc/logol/examples/external2.logol
    • /usr/share/doc/logol/examples/fix2244.logol
    • /usr/share/doc/logol/examples/indel.fasta
    • /usr/share/doc/logol/examples/indel.logol
    • /usr/share/doc/logol/examples/logol.properties
    • /usr/share/doc/logol/examples/metacontrol.logol
    • /usr/share/doc/logol/examples/morphism.lgd
    • /usr/share/doc/logol/examples/morphism.logol
    • /usr/share/doc/logol/examples/morphism_var.logol
    • /usr/share/doc/logol/examples/multiple_model.logol
    • /usr/share/doc/logol/examples/mycost.logol
    • /usr/share/doc/logol/examples/negcontent.lgd
    • /usr/share/doc/logol/examples/negcontent.logol
    • /usr/share/doc/logol/examples/negcontent2.logol
    • /usr/share/doc/logol/examples/negcontent3.logol
    • /usr/share/doc/logol/examples/notrepeat.logol
    • /usr/share/doc/logol/examples/notview.logol
    • /usr/share/doc/logol/examples/optimal.lgd
    • /usr/share/doc/logol/examples/optimal.logol
    • /usr/share/doc/logol/examples/or_condition.logol
    • /usr/share/doc/logol/examples/or_condition2.logol
    • /usr/share/doc/logol/examples/overlap.logol
    • /usr/share/doc/logol/examples/parent_exact.logol
    • /usr/share/doc/logol/examples/parent_witherror.logol
    • /usr/share/doc/logol/examples/parent_witherror2.logol
    • /usr/share/doc/logol/examples/partialcomplement.logol
    • /usr/share/doc/logol/examples/protein.fasta
    • /usr/share/doc/logol/examples/protein.logol
    • /usr/share/doc/logol/examples/repeat.logol
    • /usr/share/doc/logol/examples/repeat_any.logol
    • /usr/share/doc/logol/examples/repeat_anyspacer.logol
    • /usr/share/doc/logol/examples/repeat_interspacer.logol
    • /usr/share/doc/logol/examples/repeat_overlap.logol
    • /usr/share/doc/logol/examples/repeat_startspacer.logol
    • /usr/share/doc/logol/examples/reverse.logol
    • /usr/share/doc/logol/examples/ruby-cassiopee.properties
    • /usr/share/doc/logol/examples/test.fasta
    • /usr/share/doc/logol/examples/variable.lgd
    • /usr/share/doc/logol/examples/variable.logol
    • /usr/share/doc/logol/examples/variable_postcontent.logol
    • /usr/share/doc/logol/examples/variable_postcontent_witherror.logol
    • /usr/share/doc/logol/examples/variable_unknown.logol
    • /usr/share/doc/logol/examples/variablewithdistance.logol
    • /usr/share/doc/logol/examples/variablewithdistance2.logol
    • /usr/share/doc/logol/examples/variablewitherror.logol
    • /usr/share/doc/logol/examples/variablewitherroranddistance.logol
    • /usr/share/doc/logol/examples/view_begin.logol
    • /usr/share/doc/logol/examples/vmatch.fasta
    • /usr/share/doc/logol/examples/vmatch.logol
    • /usr/share/doc/logol/examples/vmatch.properties
    • /usr/share/doc/logol/examples/vmatch2.logol
    • /usr/share/doc/logol/examples/vmatch3.logol
    • /usr/share/lintian/overrides/logol
    • /usr/share/logol/LogolExec.sh
    • /usr/share/logol/LogolMultiExec.sh
    • /usr/share/logol/Model2Grammar.sh
    • /usr/share/logol/convert2fasta.sh
    • /usr/share/logol/convert2gff.sh
    • /usr/share/logol/log4j.properties
    • /usr/share/logol/lib/LogolExec.jar
    • /usr/share/logol/lib/activation.jar
    • /usr/share/logol/lib/antlr.jar
    • /usr/share/logol/lib/biojava.jar
    • /usr/share/logol/lib/bytecode.jar
    • /usr/share/logol/lib/commons-cli.jar
    • /usr/share/logol/lib/commons-collections.jar
    • /usr/share/logol/lib/commons-configuration.jar
    • /usr/share/logol/lib/commons-lang.jar
    • /usr/share/logol/lib/commons-logging.jar
    • /usr/share/logol/lib/drmaa.jar
    • /usr/share/logol/lib/log4j-1.2.jar
    • /usr/share/logol/lib/mail.jar
    • /usr/share/logol/lib/serializer.jar
    • /usr/share/logol/lib/xalan.jar
    • /usr/share/logol/lib/xercesImpl.jar
    • /usr/share/logol/lib/xml-apis.jar
    • /usr/share/logol/prolog/SWI-README
    • /usr/share/logol/prolog/logol.merge.xsl
    • /usr/share/logol/prolog/logol.order.xsl
    • /usr/share/logol/prolog/logol.pl
    • /usr/share/logol/prolog/logol.properties
    • /usr/share/logol/prolog/mail.tpl
    • /usr/share/logol/prolog/mapfile.dna
    • /usr/share/logol/prolog/match.dtd
    • /usr/share/logol/prolog/optimal.pro
    • /usr/share/logol/prolog/sicstus.pl
    • /usr/share/logol/prolog/swi-logol.pl
    • /usr/share/logol/prolog/unitTest/plunittest.pro
    • /usr/share/logol/prolog/unitTest/sampleUnit.pro
    • /usr/share/logol/prolog/unitTest/swi-unit.pl
    • /usr/share/logol/tools/README.txt
    • /usr/share/logol/tools/amb.map
    • /usr/share/logol/tools/cassiopeeSearch.rb
    • /usr/share/logol/tools/generate-doc.sh
    • /usr/share/logol/tools/logol.aux
    • /usr/share/logol/tools/logol.idx
    • /usr/share/logol/tools/logol.log
    • /usr/share/logol/tools/logol.out
    • /usr/share/logol/tools/logolIndex.rb
    • /usr/share/logol/tools/logolSearch.rb
    • /usr/share/logol/tools/logolSearch.sh
    • /usr/share/logol/tools/mycostfunction
    • /usr/share/logol/tools/pldoc.sty.upstream
    • /usr/share/logol/tools/suffixSearch.rb
    • /usr/share/logol/tools/swidoc.pl
    • /usr/share/man/man1/LogolExec.1.gz
    • /usr/share/man/man1/LogolMultiExec.1.gz

    Changelog

    2015-02-01 - Olivier Sallou <osallou@debian.org> logol (1.7.0-2) unstable; urgency=medium * d/control,d/patches/remove_drmaa_support: Remove libdrmaa-java dependency due to gridengine removal from Jessie (#776131). d/series: remove drmaa patch d/README.Debian: explain non drmaa support of this release

    2014-05-21 - Євгеній Мещеряков <eugen@debian.org> logol (1.7.0-1.1) unstable; urgency=high * Non-maintainer upload. * No source changes, rebuild against swi-prolog 6.6.5 * Urgency high to not hold migration of swi-prolog for much longer

    2014-02-08 - Olivier Sallou <osallou@debian.org> logol (1.7.0-1) unstable; urgency=low * New upstream release

    2014-02-08 - Olivier Sallou <osallou@debian.org> logol (1.6.10-1) unstable; urgency=low * New upstream release, fix bug on Hamming error search

    2014-01-17 - Olivier Sallou <osallou@debian.org> logol (1.6.9-3) unstable; urgency=low * d/control,d/patches: Remove rubygems dependency, thanks to Cédric Boutillier <boutil@debian.org> (Closes: #735579). * Upgrade to Standards 3.9.5.

    2013-12-01 - Olivier Sallou <osallou@debian.org> logol (1.6.9-2) unstable; urgency=low * Fix prolog doc generation (Closes: #730916).

    2013-11-11 - Olivier Sallou <osallou@debian.org> logol (1.6.9-1) unstable; urgency=low * New upstream release (bug fixes, add Windows support for Sicstus 4.2.x and Swi-prolog).

    2013-10-30 - Olivier Sallou <osallou@debian.org> logol (1.6.6-1) unstable; urgency=low * New upstream releas (bug fixes on morphisms and doc).

    2013-10-25 - Olivier Sallou <osallou@debian.org> logol (1.6.5-1) unstable; urgency=low * New upstream release (memory footprint optimisation in some cases).

    2013-10-22 - Olivier Sallou <osallou@debian.org> logol (1.6.4-1) unstable; urgency=low * New upstream release fixing bugs

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