logol_1.7.0-2_all.deb


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Description

logol - Pattern matching tool using Logol language

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name logol
Package version 1.7.0
Package release 2
Package architecture all
Package type deb
Installed size 1.46 KB
Download size 1.12 MB
Official Mirror ftp.br.debian.org
Logol is a pattern matching tool using the Logol language.
It searches with a specific grammar a pattern in small
or large sequence (dna, rna, protein). It provides complete
result matching with the original grammar in the results.

Alternatives

Package Version Architecture Repository
logol_1.7.0-2_all.deb 1.7.0 all Debian Main
logol - - -

Requires

Name Value
antlr3 -
cassiopee -
default-jre -
gawk -
java7-runtime -
libbiojava-java -
libcommons-cli-java -
libcommons-collections3-java -
libcommons-configuration-java -
libcommons-lang-java -
libcommons-logging-java -
libgnumail-java -
liblog4j1.2-java -
libxalan2-java -
libxerces2-java -
logol-bin -
ruby -

Download

Type URL
Binary Package logol_1.7.0-2_all.deb
Source Package logol

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install logol deb package:
    # sudo apt-get install logol

Files

Path
/etc/logol/logol.properties
/usr/bin/LogolExec
/usr/bin/LogolMultiExec
/usr/share/doc-base/logol
/usr/share/doc/logol/LogolGrammar.txt
/usr/share/doc/logol/README.Debian
/usr/share/doc/logol/README.txt
/usr/share/doc/logol/SWI-README
/usr/share/doc/logol/changelog.Debian.gz
/usr/share/doc/logol/changelog.gz
/usr/share/doc/logol/copyright
/usr/share/doc/logol/logol-usage.pdf.gz
/usr/share/doc/logol/logolParser.pdf.gz
/usr/share/doc/logol/tutorial.pdf.gz
/usr/share/doc/logol/examples/1799.fasta
/usr/share/doc/logol/examples/1799.logol
/usr/share/doc/logol/examples/1800.fasta
/usr/share/doc/logol/examples/1800.logol
/usr/share/doc/logol/examples/1806.logol
/usr/share/doc/logol/examples/2235.fasta
/usr/share/doc/logol/examples/2235.logol
/usr/share/doc/logol/examples/2242.fasta
/usr/share/doc/logol/examples/2242.logol
/usr/share/doc/logol/examples/2243.fasta
/usr/share/doc/logol/examples/2243.logol
/usr/share/doc/logol/examples/2244.fasta
/usr/share/doc/logol/examples/2244.logol
/usr/share/doc/logol/examples/all.lgd
/usr/share/doc/logol/examples/all.logol
/usr/share/doc/logol/examples/alphabet.logol
/usr/share/doc/logol/examples/ambiguous.logol
/usr/share/doc/logol/examples/anyspacer.lgd
/usr/share/doc/logol/examples/anyspacer.logol
/usr/share/doc/logol/examples/begin.lgd
/usr/share/doc/logol/examples/begin.logol
/usr/share/doc/logol/examples/begin_postpone.logol
/usr/share/doc/logol/examples/call_model.logol
/usr/share/doc/logol/examples/call_model2.logol
/usr/share/doc/logol/examples/call_model3.logol
/usr/share/doc/logol/examples/call_model4.logol
/usr/share/doc/logol/examples/comment.logol
/usr/share/doc/logol/examples/comment2.logol
/usr/share/doc/logol/examples/complement.logol
/usr/share/doc/logol/examples/complex.logol
/usr/share/doc/logol/examples/cost_postpone.logol
/usr/share/doc/logol/examples/end.logol
/usr/share/doc/logol/examples/external.logol
/usr/share/doc/logol/examples/external2.logol
/usr/share/doc/logol/examples/fix2244.logol
/usr/share/doc/logol/examples/indel.fasta
/usr/share/doc/logol/examples/indel.logol
/usr/share/doc/logol/examples/logol.properties
/usr/share/doc/logol/examples/metacontrol.logol
/usr/share/doc/logol/examples/morphism.lgd
/usr/share/doc/logol/examples/morphism.logol
/usr/share/doc/logol/examples/morphism_var.logol
/usr/share/doc/logol/examples/multiple_model.logol
/usr/share/doc/logol/examples/mycost.logol
/usr/share/doc/logol/examples/negcontent.lgd
/usr/share/doc/logol/examples/negcontent.logol
/usr/share/doc/logol/examples/negcontent2.logol
/usr/share/doc/logol/examples/negcontent3.logol
/usr/share/doc/logol/examples/notrepeat.logol
/usr/share/doc/logol/examples/notview.logol
/usr/share/doc/logol/examples/optimal.lgd
/usr/share/doc/logol/examples/optimal.logol
/usr/share/doc/logol/examples/or_condition.logol
/usr/share/doc/logol/examples/or_condition2.logol
/usr/share/doc/logol/examples/overlap.logol
/usr/share/doc/logol/examples/parent_exact.logol
/usr/share/doc/logol/examples/parent_witherror.logol
/usr/share/doc/logol/examples/parent_witherror2.logol
/usr/share/doc/logol/examples/partialcomplement.logol
/usr/share/doc/logol/examples/protein.fasta
/usr/share/doc/logol/examples/protein.logol
/usr/share/doc/logol/examples/repeat.logol
/usr/share/doc/logol/examples/repeat_any.logol
/usr/share/doc/logol/examples/repeat_anyspacer.logol
/usr/share/doc/logol/examples/repeat_interspacer.logol
/usr/share/doc/logol/examples/repeat_overlap.logol
/usr/share/doc/logol/examples/repeat_startspacer.logol
/usr/share/doc/logol/examples/reverse.logol
/usr/share/doc/logol/examples/ruby-cassiopee.properties
/usr/share/doc/logol/examples/test.fasta
/usr/share/doc/logol/examples/variable.lgd
/usr/share/doc/logol/examples/variable.logol
/usr/share/doc/logol/examples/variable_postcontent.logol
/usr/share/doc/logol/examples/variable_postcontent_witherror.logol
/usr/share/doc/logol/examples/variable_unknown.logol
/usr/share/doc/logol/examples/variablewithdistance.logol
/usr/share/doc/logol/examples/variablewithdistance2.logol
/usr/share/doc/logol/examples/variablewitherror.logol
/usr/share/doc/logol/examples/variablewitherroranddistance.logol
/usr/share/doc/logol/examples/view_begin.logol
/usr/share/doc/logol/examples/vmatch.fasta
/usr/share/doc/logol/examples/vmatch.logol
/usr/share/doc/logol/examples/vmatch.properties
/usr/share/doc/logol/examples/vmatch2.logol
/usr/share/doc/logol/examples/vmatch3.logol
/usr/share/lintian/overrides/logol
/usr/share/logol/LogolExec.sh
/usr/share/logol/LogolMultiExec.sh
/usr/share/logol/Model2Grammar.sh
/usr/share/logol/convert2fasta.sh
/usr/share/logol/convert2gff.sh
/usr/share/logol/log4j.properties
/usr/share/logol/lib/LogolExec.jar
/usr/share/logol/lib/activation.jar
/usr/share/logol/lib/antlr.jar
/usr/share/logol/lib/biojava.jar
/usr/share/logol/lib/bytecode.jar
/usr/share/logol/lib/commons-cli.jar
/usr/share/logol/lib/commons-collections.jar
/usr/share/logol/lib/commons-configuration.jar
/usr/share/logol/lib/commons-lang.jar
/usr/share/logol/lib/commons-logging.jar
/usr/share/logol/lib/drmaa.jar
/usr/share/logol/lib/log4j-1.2.jar
/usr/share/logol/lib/mail.jar
/usr/share/logol/lib/serializer.jar
/usr/share/logol/lib/xalan.jar
/usr/share/logol/lib/xercesImpl.jar
/usr/share/logol/lib/xml-apis.jar
/usr/share/logol/prolog/SWI-README
/usr/share/logol/prolog/logol.merge.xsl
/usr/share/logol/prolog/logol.order.xsl
/usr/share/logol/prolog/logol.pl
/usr/share/logol/prolog/logol.properties
/usr/share/logol/prolog/mail.tpl
/usr/share/logol/prolog/mapfile.dna
/usr/share/logol/prolog/match.dtd
/usr/share/logol/prolog/optimal.pro
/usr/share/logol/prolog/sicstus.pl
/usr/share/logol/prolog/swi-logol.pl
/usr/share/logol/prolog/unitTest/plunittest.pro
/usr/share/logol/prolog/unitTest/sampleUnit.pro
/usr/share/logol/prolog/unitTest/swi-unit.pl
/usr/share/logol/tools/README.txt
/usr/share/logol/tools/amb.map
/usr/share/logol/tools/cassiopeeSearch.rb
/usr/share/logol/tools/generate-doc.sh
/usr/share/logol/tools/logol.aux
/usr/share/logol/tools/logol.idx
/usr/share/logol/tools/logol.log
/usr/share/logol/tools/logol.out
/usr/share/logol/tools/logolIndex.rb
/usr/share/logol/tools/logolSearch.rb
/usr/share/logol/tools/logolSearch.sh
/usr/share/logol/tools/mycostfunction
/usr/share/logol/tools/pldoc.sty.upstream
/usr/share/logol/tools/suffixSearch.rb
/usr/share/logol/tools/swidoc.pl
/usr/share/man/man1/LogolExec.1.gz
/usr/share/man/man1/LogolMultiExec.1.gz

Changelog

2015-02-01 - Olivier Sallou <osallou@debian.org>
logol (1.7.0-2) unstable; urgency=medium
* d/control,d/patches/remove_drmaa_support: Remove libdrmaa-java dependency
due to gridengine removal from Jessie (#776131).
d/series: remove drmaa patch
d/README.Debian: explain non drmaa support of this release
2014-05-21 - Євгеній Мещеряков <eugen@debian.org>
logol (1.7.0-1.1) unstable; urgency=high
* Non-maintainer upload.
* No source changes, rebuild against swi-prolog 6.6.5
* Urgency high to not hold migration of swi-prolog for much longer
2014-02-08 - Olivier Sallou <osallou@debian.org>
logol (1.7.0-1) unstable; urgency=low
* New upstream release
2014-02-08 - Olivier Sallou <osallou@debian.org>
logol (1.6.10-1) unstable; urgency=low
* New upstream release, fix bug on Hamming error search 
2014-01-17 - Olivier Sallou <osallou@debian.org>
logol (1.6.9-3) unstable; urgency=low
* d/control,d/patches: Remove rubygems dependency, thanks to
Cédric Boutillier <boutil@debian.org> (Closes: #735579).
* Upgrade to Standards 3.9.5.
2013-12-01 - Olivier Sallou <osallou@debian.org>
logol (1.6.9-2) unstable; urgency=low
* Fix prolog doc generation (Closes: #730916).
2013-11-11 - Olivier Sallou <osallou@debian.org>
logol (1.6.9-1) unstable; urgency=low
* New upstream release (bug fixes, add Windows support
for Sicstus 4.2.x and Swi-prolog).
2013-10-30 - Olivier Sallou <osallou@debian.org>
logol (1.6.6-1) unstable; urgency=low
* New upstream releas (bug fixes on morphisms and doc).
2013-10-25 - Olivier Sallou <osallou@debian.org>
logol (1.6.5-1) unstable; urgency=low
* New upstream release (memory footprint optimisation in some cases).
2013-10-22 - Olivier Sallou <osallou@debian.org>
logol (1.6.4-1) unstable; urgency=low
* New upstream release fixing bugs

See Also

Package Description
logreq_1.0-1_all.deb LaTeX compiling helper
logrotate_3.8.7-1+b1_amd64.deb Log rotation utility
logstalgia_1.0.6-1_amd64.deb web server access log visualizer
logster_0.0.1-2_all.deb Generate metrics from logfiles for Graphite and Ganglia
logtail_1.3.17_all.deb Print log file lines that have not been read
logtool_1.2.8-8_amd64.deb Syslog-style logfile parser with lots of output options
logtools_0.13d_amd64.deb Russell's misc tools for managing log files
logtop_0.4.3-1_amd64.deb real time log line rate analyzer
logwatch_7.4.1-2_all.deb log analyser with nice output written in Perl
lojban-common_1.5+dfsg.1-2_all.deb commonly-used wordlists for the Lojban language
lokalize_4.13.3-1_amd64.deb computer-aided translation system
loki-doc_2.4.7.4-5_all.deb MCMC linkage analysis on general pedigrees (PS manual)
loki_2.4.7.4-5_amd64.deb MCMC linkage analysis on general pedigrees
lolcat_42.0.99-1_all.deb colorful `cat`
lomoco_1.0.0-1_amd64.deb Logitech Mouse Control for USB mice
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