libjellyfish-2.0-dev_2.1.4-1_amd64.deb


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Description

libjellyfish-2.0-dev - count k-mers in DNA sequences (development files of jellyfish)

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name libjellyfish-2.0-dev
Package version 2.1.4
Package release 1
Package architecture amd64
Package type deb
Installed size 632 B
Download size 114.55 KB
Official Mirror ftp.br.debian.org
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
This package contains the development files (static library and
header files)

Alternatives

Package Version Architecture Repository
libjellyfish-2.0-dev - - -

Requires

Name Value
libjellyfish-2.0-2 = 2.1.4-1

Download

Type URL
Binary Package libjellyfish-2.0-dev_2.1.4-1_amd64.deb
Source Package jellyfish

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libjellyfish-2.0-dev deb package:
    # sudo apt-get install libjellyfish-2.0-dev

Files

Path
/usr/include/jellyfish/allocators_mmap.hpp
/usr/include/jellyfish/atomic_bits_array.hpp
/usr/include/jellyfish/atomic_field.hpp
/usr/include/jellyfish/atomic_gcc.hpp
/usr/include/jellyfish/backtrace.hpp
/usr/include/jellyfish/binary_dumper.hpp
/usr/include/jellyfish/bloom_common.hpp
/usr/include/jellyfish/bloom_counter2.hpp
/usr/include/jellyfish/bloom_filter.hpp
/usr/include/jellyfish/circular_buffer.hpp
/usr/include/jellyfish/compare_and_swap.hpp
/usr/include/jellyfish/cooperative_pool.hpp
/usr/include/jellyfish/cooperative_pool2.hpp
/usr/include/jellyfish/cpp_array.hpp
/usr/include/jellyfish/divisor.hpp
/usr/include/jellyfish/dumper.hpp
/usr/include/jellyfish/err.hpp
/usr/include/jellyfish/file_header.hpp
/usr/include/jellyfish/generator_manager.hpp
/usr/include/jellyfish/generic_file_header.hpp
/usr/include/jellyfish/hash_counter.hpp
/usr/include/jellyfish/int128.hpp
/usr/include/jellyfish/jellyfish.hpp
/usr/include/jellyfish/large_hash_array.hpp
/usr/include/jellyfish/large_hash_iterator.hpp
/usr/include/jellyfish/locks_pthread.hpp
/usr/include/jellyfish/mapped_file.hpp
/usr/include/jellyfish/mer_dna.hpp
/usr/include/jellyfish/mer_dna_bloom_counter.hpp
/usr/include/jellyfish/mer_heap.hpp
/usr/include/jellyfish/mer_iterator.hpp
/usr/include/jellyfish/mer_overlap_sequence_parser.hpp
/usr/include/jellyfish/mer_qual_iterator.hpp
/usr/include/jellyfish/misc.hpp
/usr/include/jellyfish/offsets_key_value.hpp
/usr/include/jellyfish/rectangular_binary_matrix.hpp
/usr/include/jellyfish/simple_circular_buffer.hpp
/usr/include/jellyfish/sorted_dumper.hpp
/usr/include/jellyfish/stdio_filebuf.hpp
/usr/include/jellyfish/storage.hpp
/usr/include/jellyfish/stream_iterator.hpp
/usr/include/jellyfish/stream_manager.hpp
/usr/include/jellyfish/text_dumper.hpp
/usr/include/jellyfish/thread_exec.hpp
/usr/include/jellyfish/time.hpp
/usr/include/jellyfish/token_ring.hpp
/usr/include/jellyfish/whole_sequence_parser.hpp
/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a
/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.la
/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so
/usr/share/doc/libjellyfish-2.0-dev/changelog.Debian.gz
/usr/share/doc/libjellyfish-2.0-dev/changelog.gz
/usr/share/doc/libjellyfish-2.0-dev/copyright

Changelog

See jellyfish_2.1.4-1_amd64.deb changelog.

See Also

Package Description
libjemalloc-dev_3.6.0-3_amd64.deb development files and documentation for jemalloc
libjemalloc1_3.6.0-3_amd64.deb general-purpose scalable concurrent malloc(3) implementation
libjemmy2-java-doc_2.3.1.1-2_all.deb Java library for automated Java GUI testing (documentation)
libjemmy2-java_2.3.1.1-2_all.deb Java library for automated Java GUI testing
libjempbox-java-doc_1.8.7+dfsg-1+deb8u1_all.deb XMP Compatible Java Library (documentation)
libjempbox-java_1.8.7+dfsg-1+deb8u1_all.deb XMP Compatible Java Library
libjena-iri-java_0.8-1_all.deb Java implementation of the RFC 3987 (IRI) norm
libjenkins-commons-jelly-java-doc_1.1-jenkins-20120928-1_all.deb Documentation for libjenkins-commons-jelly-java
libjenkins-commons-jelly-java_1.1-jenkins-20120928-1_all.deb Jenkins fork of Apache Commons Jelly
libjenkins-commons-jexl-java-doc_1.1-jenkins-20111212-1_all.deb Documentation for libjenkins-commons-jexl-java
libjenkins-commons-jexl-java_1.1-jenkins-20111212-1_all.deb Jenkins fork of the JSTL Expression Language with extensions
libjenkins-constant-pool-scanner-java-doc_1.2-1_all.deb Documentation for Constant Pool Scanner
libjenkins-constant-pool-scanner-java_1.2-1_all.deb Constant Pool Scanner
libjenkins-dom4j-java-doc_1.6.1-jenkins-4-1_all.deb Documentation for libjenkins-dom4j-java
libjenkins-dom4j-java_1.6.1-jenkins-4-1_all.deb Jenkins variant of the flexible XML framework for Java
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