libjellyfish-2.0-dev_2.1.4-1_amd64.deb


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Description

libjellyfish-2.0-dev - count k-mers in DNA sequences (development files of jellyfish)

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: libjellyfish-2.0-dev
Package version: 2.1.4
Package release: 1
Package architecture: amd64
Package type: deb
Installed size: 632 B
Download size: 114.55 KB
Official Mirror: ftp.br.debian.org
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. This package contains the development files (static library and header files)

Alternatives

    Download

    Source package: jellyfish

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install libjellyfish-2.0-dev deb package:
      # sudo apt-get install libjellyfish-2.0-dev

    Files

    • /usr/include/jellyfish/allocators_mmap.hpp
    • /usr/include/jellyfish/atomic_bits_array.hpp
    • /usr/include/jellyfish/atomic_field.hpp
    • /usr/include/jellyfish/atomic_gcc.hpp
    • /usr/include/jellyfish/backtrace.hpp
    • /usr/include/jellyfish/binary_dumper.hpp
    • /usr/include/jellyfish/bloom_common.hpp
    • /usr/include/jellyfish/bloom_counter2.hpp
    • /usr/include/jellyfish/bloom_filter.hpp
    • /usr/include/jellyfish/circular_buffer.hpp
    • /usr/include/jellyfish/compare_and_swap.hpp
    • /usr/include/jellyfish/cooperative_pool.hpp
    • /usr/include/jellyfish/cooperative_pool2.hpp
    • /usr/include/jellyfish/cpp_array.hpp
    • /usr/include/jellyfish/divisor.hpp
    • /usr/include/jellyfish/dumper.hpp
    • /usr/include/jellyfish/err.hpp
    • /usr/include/jellyfish/file_header.hpp
    • /usr/include/jellyfish/generator_manager.hpp
    • /usr/include/jellyfish/generic_file_header.hpp
    • /usr/include/jellyfish/hash_counter.hpp
    • /usr/include/jellyfish/int128.hpp
    • /usr/include/jellyfish/jellyfish.hpp
    • /usr/include/jellyfish/large_hash_array.hpp
    • /usr/include/jellyfish/large_hash_iterator.hpp
    • /usr/include/jellyfish/locks_pthread.hpp
    • /usr/include/jellyfish/mapped_file.hpp
    • /usr/include/jellyfish/mer_dna.hpp
    • /usr/include/jellyfish/mer_dna_bloom_counter.hpp
    • /usr/include/jellyfish/mer_heap.hpp
    • /usr/include/jellyfish/mer_iterator.hpp
    • /usr/include/jellyfish/mer_overlap_sequence_parser.hpp
    • /usr/include/jellyfish/mer_qual_iterator.hpp
    • /usr/include/jellyfish/misc.hpp
    • /usr/include/jellyfish/offsets_key_value.hpp
    • /usr/include/jellyfish/rectangular_binary_matrix.hpp
    • /usr/include/jellyfish/simple_circular_buffer.hpp
    • /usr/include/jellyfish/sorted_dumper.hpp
    • /usr/include/jellyfish/stdio_filebuf.hpp
    • /usr/include/jellyfish/storage.hpp
    • /usr/include/jellyfish/stream_iterator.hpp
    • /usr/include/jellyfish/stream_manager.hpp
    • /usr/include/jellyfish/text_dumper.hpp
    • /usr/include/jellyfish/thread_exec.hpp
    • /usr/include/jellyfish/time.hpp
    • /usr/include/jellyfish/token_ring.hpp
    • /usr/include/jellyfish/whole_sequence_parser.hpp
    • /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.a
    • /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.la
    • /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so
    • /usr/share/doc/libjellyfish-2.0-dev/changelog.Debian.gz
    • /usr/share/doc/libjellyfish-2.0-dev/changelog.gz
    • /usr/share/doc/libjellyfish-2.0-dev/copyright

    Changelog

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