libjellyfish-2.0-2_2.1.4-1_amd64.deb


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Description

libjellyfish-2.0-2 - count k-mers in DNA sequences (dynamic library of jellyfish)

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name libjellyfish-2.0-2
Package version 2.1.4
Package release 1
Package architecture amd64
Package type deb
Installed size 220 B
Download size 62.08 KB
Official Mirror ftp.br.debian.org
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in
DNA. A k-mer is a substring of length k, and counting the occurrences
of all such substrings is a central step in many analyses of DNA
sequence. JELLYFISH can count k-mers using an order of magnitude less
memory and an order of magnitude faster than other k-mer counting
packages by using an efficient encoding of a hash table and by
exploiting the "compare-and-swap" CPU instruction to increase
parallelism.
JELLYFISH is a command-line program that reads FASTA and multi-FASTA
files containing DNA sequences. It outputs its k-mer counts in an
binary format, which can be translated into a human-readable text
format using the "jellyfish dump" command.
This package contains the dynamic library the main executable of
jellyfish is linked to.

Alternatives

Package Version Architecture Repository
libjellyfish-2.0-2 - - -

Requires

Name Value
libc6 >= 2.14
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.9

Download

Type URL
Binary Package libjellyfish-2.0-2_2.1.4-1_amd64.deb
Source Package jellyfish

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libjellyfish-2.0-2 deb package:
    # sudo apt-get install libjellyfish-2.0-2

Files

Path
/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so.2
/usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so.2.0.0
/usr/share/doc/libjellyfish-2.0-2/changelog.Debian.gz
/usr/share/doc/libjellyfish-2.0-2/changelog.gz
/usr/share/doc/libjellyfish-2.0-2/copyright
/usr/share/lintian/overrides/libjellyfish-2.0-2

Changelog

See jellyfish_2.1.4-1_amd64.deb changelog.

See Also

Package Description
libjellyfish-2.0-dev_2.1.4-1_amd64.deb count k-mers in DNA sequences (development files of jellyfish)
libjemalloc-dev_3.6.0-3_amd64.deb development files and documentation for jemalloc
libjemalloc1_3.6.0-3_amd64.deb general-purpose scalable concurrent malloc(3) implementation
libjemmy2-java-doc_2.3.1.1-2_all.deb Java library for automated Java GUI testing (documentation)
libjemmy2-java_2.3.1.1-2_all.deb Java library for automated Java GUI testing
libjempbox-java-doc_1.8.7+dfsg-1+deb8u1_all.deb XMP Compatible Java Library (documentation)
libjempbox-java_1.8.7+dfsg-1+deb8u1_all.deb XMP Compatible Java Library
libjena-iri-java_0.8-1_all.deb Java implementation of the RFC 3987 (IRI) norm
libjenkins-commons-jelly-java-doc_1.1-jenkins-20120928-1_all.deb Documentation for libjenkins-commons-jelly-java
libjenkins-commons-jelly-java_1.1-jenkins-20120928-1_all.deb Jenkins fork of Apache Commons Jelly
libjenkins-commons-jexl-java-doc_1.1-jenkins-20111212-1_all.deb Documentation for libjenkins-commons-jexl-java
libjenkins-commons-jexl-java_1.1-jenkins-20111212-1_all.deb Jenkins fork of the JSTL Expression Language with extensions
libjenkins-constant-pool-scanner-java-doc_1.2-1_all.deb Documentation for Constant Pool Scanner
libjenkins-constant-pool-scanner-java_1.2-1_all.deb Constant Pool Scanner
libjenkins-dom4j-java-doc_1.6.1-jenkins-4-1_all.deb Documentation for libjenkins-dom4j-java
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