libjellyfish-2.0-2 - count k-mers in DNA sequences (dynamic library of jellyfish)

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: libjellyfish-2.0-2
Package version: 2.1.4
Package release: 1
Package architecture: amd64
Package type: deb
Installed size: 220 B
Download size: 62.08 KB
Official Mirror:
JELLYFISH is a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers using an order of magnitude less memory and an order of magnitude faster than other k-mer counting packages by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism. JELLYFISH is a command-line program that reads FASTA and multi-FASTA files containing DNA sequences. It outputs its k-mer counts in an binary format, which can be translated into a human-readable text format using the "jellyfish dump" command. This package contains the dynamic library the main executable of jellyfish is linked to.



    Source package: jellyfish

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install libjellyfish-2.0-2 deb package:
      # sudo apt-get install libjellyfish-2.0-2


    • /usr/lib/x86_64-linux-gnu/
    • /usr/lib/x86_64-linux-gnu/
    • /usr/share/doc/libjellyfish-2.0-2/changelog.Debian.gz
    • /usr/share/doc/libjellyfish-2.0-2/changelog.gz
    • /usr/share/doc/libjellyfish-2.0-2/copyright
    • /usr/share/lintian/overrides/libjellyfish-2.0-2