libhmsbeagle1 - High-performance lib for Bayesian and Maximum Likelihood phylogenetics

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name libhmsbeagle1
Package version 2.1.2
Package release 1
Package architecture amd64
Package type deb
Installed size 369 B
Download size 70.69 KB
Official Mirror
BEAGLE is a high-performance library that can perform the core calculations at
the heart of most Bayesian and Maximum Likelihood phylogenetics packages. It
can make use of highly-parallel processors such as those in graphics cards
(GPUs) found in many PCs.
The project involves an open API and fast implementations of a library for
evaluating phylogenetic likelihoods (continuous time Markov processes) of
biomolecular sequence evolution.
The aim is to provide high performance evaluation 'services' to a wide range
of phylogenetic software, both Bayesian samplers and Maximum Likelihood
optimizers.  This allows these packages to make use of implementations that
make use of optimized hardware such as graphics processing units.


Package Version Architecture Repository
libhmsbeagle1_2.1.2-1_i386.deb 2.1.2 i386 Debian Main
libhmsbeagle1 - - -


Name Value
libc6 >= 2.14
libgcc1 >= 1:4.1.1
libstdc++6 >= 4.6
multiarch-support -


Type URL
Binary Package libhmsbeagle1_2.1.2-1_amd64.deb
Source Package libhmsbeagle

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libhmsbeagle1 deb package:
    # sudo apt-get install libhmsbeagle1




2014-10-01 - Andreas Tille <>
libhmsbeagle (2.1.2-1) unstable; urgency=medium
* New upstream version
* Moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
2014-01-13 - Andreas Tille <>
libhmsbeagle (2.1-2) unstable; urgency=medium
* debian/libhmsbeagle-dev.links: Link to non-versioned include files since
it is used that way in mrbayes (and probably others)
2013-12-22 - Andreas Tille <>
libhmsbeagle (2.1-1) unstable; urgency=medium
* New upstream version
manpages for examples are not built by default
Closes: #713882
* debian/control:
- Standards-Version: 3.9.5
- Build-Depends: graphviz
2013-08-23 - Andreas Tille <>
libhmsbeagle (1.1r1092-2) unstable; urgency=low
* Upload to unstable because it
Closes: #720562
* debian/control:
- cme fix dpkg-control
- anonscm in Vcs fields
2012-12-16 - Andreas Tille <>
libhmsbeagle (1.1r1092-1) experimental; urgency=low
* Package SVN trunk because it is required for beast-mcmc
2012-12-14 - Andreas Tille <>
libhmsbeagle (1.1-1) experimental; urgency=low
* New upstream release
- debian/patches/disable_cpu_sse_plugin.patch:  Seems upstream
has solved the problem a bit differently than in this patch
-> droping it for the moment
* debian/get-orig-source: use xz compression
* debhelper 9 (control+compat)
* debian/libhmsbeagle-dev.lintian-overrides: deleted; no need for overrides
any more
* debian/control:
- Build-Depends: s/openjdk-6-jdk/default-jdk (>= 1:1.6)/
(Thanks for the patch to James Page <>)
Closes: #684054
- Pre-Depend: multiarch-support
2012-05-09 - Andreas Tille <>
libhmsbeagle (1.0-6) unstable; urgency=low
* debian/upstream:
- Make authors BibTeX compliant
- Add some publication info (volume, number, pages)
* debian/get-orig-source: Try harder to get reproducible tarballs
* debian/patches/gcc-4.7.patch: Fix gcc 4.7 build issue
Closes: #672015
2012-03-05 - Andreas Tille <>
libhmsbeagle (1.0-5) unstable; urgency=low
[Charles Plessy]
* debian/upstream
- renamed from debian/upstream-metadata.yaml
- fixed title field
[Andreas Tille]
* Remove useless remainings which were forgotten to clean up in last
upload (debian/rules_peter; template comments in
* debian/copyright:
- Aaron Darling as Upstream-Contact because he seems to be competent for
packaging issues
- run `cme fix dpkg-copyright' to check for DEP5 issues
* debian/control:
- Architecture: linux-any because openjdk as is not available for kfreebsd
- Build-Depends: s/default-jdk/openjdk-6-jdk/
Closes: #661659
- Standards-Version: 3.9.3 (no changes needed)
* debhelper 8 (control+compat)
* debian/upstream: moved DOI+PMID to References
2012-01-25 - Andreas Tille <>
libhmsbeagle (1.0-4) unstable; urgency=low
* debian/patches/disable_cpu_sse_plugin.patch: Apply patch from Peter
Green (thanks for your help, Peter) and
debian/rules: Enable sse for amd64 (only) to profit from plugin library
Closes: #656755
2012-01-21 - Andreas Tille <>
libhmsbeagle (1.0-3) unstable; urgency=low
* debian/patches/enable_static.patch: Enable building static
libraries that should be contained in -dev package
* debian/libhmsbeagle-dev.install: Install static libraries

See Also

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libhook-lexwrap-perl_0.25-1_all.deb module for lexically scoped subroutine wrappers
libhook-wrapsub-perl_0.04-1_all.deb module to wrap subs with pre- and post-call hooks
libhpdf-2.2.1_2.2.1-1.1_amd64.deb C library for generating pdf files
libhpdf-dev_2.2.1-1.1_amd64.deb C library for generating pdf files (development files)
libhpmud-dev_3.14.6-1+deb8u1_amd64.deb HP Multi-Point Transport Driver (hpmud) development libraries
libhpmud0_3.14.6-1+deb8u1_amd64.deb HP Multi-Point Transport Driver (hpmud) run-time libraries
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libhsqldb-java-doc_2.2.9+dfsg-4_all.deb documentation for HSQLDB
libhsqldb-java_2.2.9+dfsg-4_all.deb Java SQL database engine
libhsqldb1.8.0-java_1.8.0.10+dfsg-3_all.deb Java SQL database engine