libgo-perl_0.15-1_all.deb


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Description

libgo-perl - perl modules for GO and other OBO ontologies

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name libgo-perl
Package version 0.15
Package release 1
Package architecture all
Package type deb
Installed size 953 B
Download size 303.96 KB
Official Mirror ftp.br.debian.org
This is a collection of perl code for dealing with Gene Ontologies (GO) and
Open Biomedical Ontologies (OBO) style ontologies. It is part of the ‘go-dev’
distribution, but this Debian package is made from the CPAN archive. This
package contains both scripts (which can be used with no knowledge of perl),
and libraries which will be of use to perl programmers using GO or OBO.

Alternatives

Package Version Architecture Repository
libgo-perl_0.15-1_all.deb 0.15 all Debian Main
libgo-perl - - -

Requires

Name Value
libdata-stag-perl -
libgraphviz-perl -
perl -

Download

Type URL
Binary Package libgo-perl_0.15-1_all.deb
Source Package libgo-perl

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libgo-perl deb package:
    # sudo apt-get install libgo-perl

Files

Path
/usr/bin/go-apply-xslt
/usr/bin/go-dag-summary
/usr/bin/go-export-graph
/usr/bin/go-export-prolog
/usr/bin/go-filter-subset
/usr/bin/go-show-assocs-by-node
/usr/bin/go-show-paths-to-root
/usr/bin/go2chadoxml
/usr/bin/go2error_report
/usr/bin/go2fmt
/usr/bin/go2godb_prestore
/usr/bin/go2obo
/usr/bin/go2obo_html
/usr/bin/go2obo_text
/usr/bin/go2obo_xml
/usr/bin/go2owl
/usr/bin/go2pathlist
/usr/bin/go2prolog
/usr/bin/go2rdf
/usr/bin/go2rdfxml
/usr/bin/go2summary
/usr/bin/go2sxpr
/usr/bin/go2tbl
/usr/bin/go2text_html
/usr/bin/go2xml
/usr/bin/map2slim
/usr/share/doc/libgo-perl/changelog.Debian.gz
/usr/share/doc/libgo-perl/changelog.gz
/usr/share/doc/libgo-perl/copyright
/usr/share/man/man1/go-apply-xslt.1p.gz
/usr/share/man/man1/go-dag-summary.1p.gz
/usr/share/man/man1/go-export-graph.1p.gz
/usr/share/man/man1/go-export-prolog.1p.gz
/usr/share/man/man1/go-filter-subset.1p.gz
/usr/share/man/man1/go-show-assocs-by-node.1p.gz
/usr/share/man/man1/go-show-paths-to-root.1p.gz
/usr/share/man/man1/go2chadoxml.1p.gz
/usr/share/man/man1/go2error_report.1p.gz
/usr/share/man/man1/go2fmt.1p.gz
/usr/share/man/man1/go2godb_prestore.1p.gz
/usr/share/man/man1/go2obo.1p.gz
/usr/share/man/man1/go2obo_html.1p.gz
/usr/share/man/man1/go2obo_text.1p.gz
/usr/share/man/man1/go2obo_xml.1p.gz
/usr/share/man/man1/go2owl.1p.gz
/usr/share/man/man1/go2pathlist.1p.gz
/usr/share/man/man1/go2prolog.1p.gz
/usr/share/man/man1/go2rdf.1p.gz
/usr/share/man/man1/go2rdfxml.1p.gz
/usr/share/man/man1/go2summary.1p.gz
/usr/share/man/man1/go2sxpr.1p.gz
/usr/share/man/man1/go2tbl.1p.gz
/usr/share/man/man1/go2text_html.1p.gz
/usr/share/man/man1/go2xml.1p.gz
/usr/share/man/man1/map2slim.1p.gz
/usr/share/man/man3/GO::Basic.3pm.gz
/usr/share/man/man3/GO::Handlers::base.3pm.gz
/usr/share/man/man3/GO::Handlers::go_def.3pm.gz
/usr/share/man/man3/GO::Handlers::go_ont.3pm.gz
/usr/share/man/man3/GO::Handlers::go_xref.3pm.gz
/usr/share/man/man3/GO::Handlers::godb_prestore.3pm.gz
/usr/share/man/man3/GO::Handlers::obj.3pm.gz
/usr/share/man/man3/GO::Handlers::obo_godb_flat.3pm.gz
/usr/share/man/man3/GO::Handlers::obo_html.3pm.gz
/usr/share/man/man3/GO::Handlers::obo_text.3pm.gz
/usr/share/man/man3/GO::Handlers::owl.3pm.gz
/usr/share/man/man3/GO::Handlers::owl_to_obo_text.3pm.gz
/usr/share/man/man3/GO::Handlers::summary.3pm.gz
/usr/share/man/man3/GO::Handlers::tbl.3pm.gz
/usr/share/man/man3/GO::Handlers::text_html.3pm.gz
/usr/share/man/man3/GO::Handlers::xsl_base.3pm.gz
/usr/share/man/man3/GO::IO::Analysis.3pm.gz
/usr/share/man/man3/GO::IO::Blast.3pm.gz
/usr/share/man/man3/GO::IO::Dotty.3pm.gz
/usr/share/man/man3/GO::IO::OBDXML.3pm.gz
/usr/share/man/man3/GO::IO::ObanOwl.3pm.gz
/usr/share/man/man3/GO::IO::RDFXML.3pm.gz
/usr/share/man/man3/GO::IO::go_assoc.3pm.gz
/usr/share/man/man3/GO::Metadata::Panther.3pm.gz
/usr/share/man/man3/GO::Model::Association.3pm.gz
/usr/share/man/man3/GO::Model::CrossProduct.3pm.gz
/usr/share/man/man3/GO::Model::DB.3pm.gz
/usr/share/man/man3/GO::Model::Evidence.3pm.gz
/usr/share/man/man3/GO::Model::GeneProduct.3pm.gz
/usr/share/man/man3/GO::Model::Graph.3pm.gz
/usr/share/man/man3/GO::Model::GraphIterator.3pm.gz
/usr/share/man/man3/GO::Model::GraphNodeInstance.3pm.gz
/usr/share/man/man3/GO::Model::LogicalDefinition.3pm.gz
/usr/share/man/man3/GO::Model::Modification.3pm.gz
/usr/share/man/man3/GO::Model::Ontology.3pm.gz
/usr/share/man/man3/GO::Model::Path.3pm.gz
/usr/share/man/man3/GO::Model::Property.3pm.gz
/usr/share/man/man3/GO::Model::Relationship.3pm.gz
/usr/share/man/man3/GO::Model::Restriction.3pm.gz
/usr/share/man/man3/GO::Model::Root.3pm.gz
/usr/share/man/man3/GO::Model::Seq.3pm.gz
/usr/share/man/man3/GO::Model::Species.3pm.gz
/usr/share/man/man3/GO::Model::Term.3pm.gz
/usr/share/man/man3/GO::Model::TreeIterator.3pm.gz
/usr/share/man/man3/GO::Model::Xref.3pm.gz
/usr/share/man/man3/GO::ObjCache.3pm.gz
/usr/share/man/man3/GO::ObjFactory.3pm.gz
/usr/share/man/man3/GO::Parser.3pm.gz
/usr/share/man/man3/GO::Parsers::ParserEventNames.3pm.gz
/usr/share/man/man3/GO::Parsers::base_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::generic_tagval_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::go_assoc_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::go_def_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::go_ids_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::go_ont_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::go_xref_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::locuslink_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::mesh_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::mgi_assoc_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::ncbi_taxon_names_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::ncbi_taxonomy_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::obj_emitter.3pm.gz
/usr/share/man/man3/GO::Parsers::obo_text_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::obo_xml_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::owl_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::references_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::refgenomes_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::unknown_format_parser.3pm.gz
/usr/share/man/man3/GO::Parsers::xrf_abbs_parser.3pm.gz
/usr/share/man/man3/GO::Utils.3pm.gz
/usr/share/man/man3/go-perl.3pm.gz
/usr/share/perl5/go-perl.pod
/usr/share/perl5/GO/Basic.pm
/usr/share/perl5/GO/ObjCache.pm
/usr/share/perl5/GO/ObjFactory.pm
/usr/share/perl5/GO/Parser.pm
/usr/share/perl5/GO/Utils.pm
/usr/share/perl5/GO/Handlers/abstract_prolog_writer.pm
/usr/share/perl5/GO/Handlers/abstract_sql_writer.pm
/usr/share/perl5/GO/Handlers/base.pm
/usr/share/perl5/GO/Handlers/go_def.pm
/usr/share/perl5/GO/Handlers/go_ont.pm
/usr/share/perl5/GO/Handlers/go_xref.pm
/usr/share/perl5/GO/Handlers/godb_prestore.pm
/usr/share/perl5/GO/Handlers/lexanalysis.pm
/usr/share/perl5/GO/Handlers/lexanalysis2sql.pm
/usr/share/perl5/GO/Handlers/obj.pm
/usr/share/perl5/GO/Handlers/obj_storable.pm
/usr/share/perl5/GO/Handlers/obj_yaml.pm
/usr/share/perl5/GO/Handlers/obo.pm
/usr/share/perl5/GO/Handlers/obo_godb_flat.pm
/usr/share/perl5/GO/Handlers/obo_html.pm
/usr/share/perl5/GO/Handlers/obo_sxpr.pm
/usr/share/perl5/GO/Handlers/obo_text.pm
/usr/share/perl5/GO/Handlers/obo_xml.pm
/usr/share/perl5/GO/Handlers/owl.pm
/usr/share/perl5/GO/Handlers/owl_to_obo_text.pm
/usr/share/perl5/GO/Handlers/pathlist.pm
/usr/share/perl5/GO/Handlers/prolog.pm
/usr/share/perl5/GO/Handlers/rdf.pm
/usr/share/perl5/GO/Handlers/summary.pm
/usr/share/perl5/GO/Handlers/sxpr.pm
/usr/share/perl5/GO/Handlers/tbl.pm
/usr/share/perl5/GO/Handlers/text_html.pm
/usr/share/perl5/GO/Handlers/xml.pm
/usr/share/perl5/GO/Handlers/xsl_base.pm
/usr/share/perl5/GO/IO/Analysis.pm
/usr/share/perl5/GO/IO/Blast.pm
/usr/share/perl5/GO/IO/Dotty.pm
/usr/share/perl5/GO/IO/OBDXML.pm
/usr/share/perl5/GO/IO/ObanOwl.pm
/usr/share/perl5/GO/IO/RDFXML.pm
/usr/share/perl5/GO/IO/XML.pm
/usr/share/perl5/GO/IO/go_assoc.pm
/usr/share/perl5/GO/Metadata/Panther.pm
/usr/share/perl5/GO/Model/Association.pm
/usr/share/perl5/GO/Model/CrossProduct.pm
/usr/share/perl5/GO/Model/DB.pm
/usr/share/perl5/GO/Model/Evidence.pm
/usr/share/perl5/GO/Model/GeneProduct.pm
/usr/share/perl5/GO/Model/Graph.pm
/usr/share/perl5/GO/Model/GraphIterator.pm
/usr/share/perl5/GO/Model/GraphNodeInstance.pm
/usr/share/perl5/GO/Model/LogicalDefinition.pm
/usr/share/perl5/GO/Model/Modification.pm
/usr/share/perl5/GO/Model/Ontology.pm
/usr/share/perl5/GO/Model/Path.pm
/usr/share/perl5/GO/Model/Property.pm
/usr/share/perl5/GO/Model/Relationship.pm
/usr/share/perl5/GO/Model/Restriction.pm
/usr/share/perl5/GO/Model/Root.pm
/usr/share/perl5/GO/Model/Seq.pm
/usr/share/perl5/GO/Model/Species.pm
/usr/share/perl5/GO/Model/Term.pm
/usr/share/perl5/GO/Model/TreeIterator.pm
/usr/share/perl5/GO/Model/Xref.pm
/usr/share/perl5/GO/Parsers/ParserEventNames.pm
/usr/share/perl5/GO/Parsers/base_parser.pm
/usr/share/perl5/GO/Parsers/generic_tagval_parser.pm
/usr/share/perl5/GO/Parsers/go_assoc_parser.pm
/usr/share/perl5/GO/Parsers/go_def_parser.pm
/usr/share/perl5/GO/Parsers/go_ids_parser.pm
/usr/share/perl5/GO/Parsers/go_ont_parser.pm
/usr/share/perl5/GO/Parsers/go_xref_parser.pm
/usr/share/perl5/GO/Parsers/locuslink_parser.pm
/usr/share/perl5/GO/Parsers/mesh_parser.pm
/usr/share/perl5/GO/Parsers/mgi_assoc_parser.pm
/usr/share/perl5/GO/Parsers/ncbi_taxon_names_parser.pm
/usr/share/perl5/GO/Parsers/ncbi_taxonomy_parser.pm
/usr/share/perl5/GO/Parsers/obj_emitter.pm
/usr/share/perl5/GO/Parsers/obj_storable_parser.pm
/usr/share/perl5/GO/Parsers/obj_yaml_parser.pm
/usr/share/perl5/GO/Parsers/obo_parser.pm
/usr/share/perl5/GO/Parsers/obo_text_parser.pm
/usr/share/perl5/GO/Parsers/obo_xml_parser.pm
/usr/share/perl5/GO/Parsers/owl_parser.pm
/usr/share/perl5/GO/Parsers/references_parser.pm
/usr/share/perl5/GO/Parsers/refgenomes_parser.pm
/usr/share/perl5/GO/Parsers/unknown_format_parser.pm
/usr/share/perl5/GO/Parsers/xrf_abbs_parser.pm
/usr/share/perl5/GO/xsl/chadoxml_to_oboxml.xsl
/usr/share/perl5/GO/xsl/ipr_to_oboxml.xsl
/usr/share/perl5/GO/xsl/oboxml_filter.xsl
/usr/share/perl5/GO/xsl/oboxml_to_chadoxml.xsl
/usr/share/perl5/GO/xsl/oboxml_to_dig.xsl
/usr/share/perl5/GO/xsl/oboxml_to_godb_prestore.xsl
/usr/share/perl5/GO/xsl/oboxml_to_obd_prestore.xsl
/usr/share/perl5/GO/xsl/oboxml_to_obotext.xsl
/usr/share/perl5/GO/xsl/oboxml_to_owl.xsl
/usr/share/perl5/GO/xsl/oboxml_to_racer.xsl
/usr/share/perl5/GO/xsl/oboxml_to_simple_owl.xsl
/usr/share/perl5/GO/xsl/oboxml_to_summary_table.xsl
/usr/share/perl5/GO/xsl/owl_to_oboxml.xsl
/usr/share/perl5/GO/xsl/text_html.xsl

Changelog

2014-01-31 - Charles Plessy <plessy@debian.org>
libgo-perl (0.15-1) unstable; urgency=medium
* New upstream release.
* Syntax corrections in machine-readable debian/copyright file.
* Normalised debian/control with the command “cme fix”.
* Using Debhelper 9.
* Renamed README.Debian README.test as it is all about tests.
* Patch through the “3.0 (quilt)” source format. 
* Remove dependances on “perl-modules”, not needed anymore. 
* Normalised VCS URLs. 
* Conforms with Policy 3.9.5.
* Build-depend on BioPerl, xsltproc and  XML::Parser::PerlSAX
for the regression tests.
[Olivier Sallou]
* d/patches/fix_test_xsltproc: fix xsl files to be spec compliant
2013-02-07 - Laszlo Kajan <lkajan@debian.org>
libgo-perl (0.13-3) unstable; urgency=low
* Clean upload without the t/data/* that got into 0.13-2 by mistake.
2013-02-07 - Laszlo Kajan <lkajan@debian.org>
libgo-perl (0.13-2) unstable; urgency=low
* Added missing libgraphviz-perl dependency (Closes: #700037).
2010-08-27 - Charles Plessy <plessy@debian.org>
libgo-perl (0.13-1) unstable; urgency=low
* New upstream version.
* Conformance with Policy 3.9.1:
- Refer to the local copy of the GPL version 1 in debian/copyright.
- Incremented Standards-Version (debian/control).
* Reformatted debian/copyright to better reflect the current DEP-5.
2010-06-30 - Charles Plessy <plessy@debian.org>
libgo-perl (0.12-1) unstable; urgency=low
* New upstream version.
* Incremented Standards-Version to reflect conformance with Policy 3.9.0
(debian/control, no changes needed).
* Stop mentionning the URL to the current version in debian/copyright.
* Documented in debian/README.debian how the package is tested.
2009-08-24 - Charles Plessy <plessy@debian.org>
libgo-perl (0.10-1) unstable; urgency=low
* New upstream version.
* debian/rules, debian/control and debian/compat and debian/watch
refreshed with dh-make-perl 0.59. This converts the package to
debhelper 7.3 from CDBS.
* Adjusted the list of recommended packages after inspection of
the upstream source code (grep -ri XML . | grep use).
* Added README.source to point to the quilt documentation.
* Refreshed debian/copyright to the latest machine-readable format.
2008-07-02 - Charles Plessy <plessy@debian.org>
libgo-perl (0.09-1) unstable; urgency=low
* New upstream version
- Add test for disjoint_from.
- Imports tag followed.
- chadoxml only: xref handling of OBO_REL : relationship namespace is used
- shownames option in map2slim.
2008-06-03 - Charles Plessy <plessy@debian.org>
libgo-perl (0.08-2) unstable; urgency=low
* debian/control: added xsltproc in the Build-Depends-Indep: field.
(Closes: #484201)
* debian/changelog: cosmetic changes.
2008-05-10 - Charles Plessy <plessy@debian.org>
libgo-perl (0.08-1) unstable; urgency=low
* Initial release (Closes: #452923)

See Also

Package Description
libgo4_4.8.4-1_amd64.deb Runtime library for GNU Go applications
libgo5_4.9.2-10+deb8u1_amd64.deb Runtime library for GNU Go applications
libgoa-1.0-0b_3.14.2-1_amd64.deb library for GNOME Online Accounts
libgoa-1.0-common_3.14.2-1_all.deb library for GNOME Online Accounts - common files
libgoa-1.0-dev_3.14.2-1_amd64.deb library for GNOME Online Accounts - development files
libgoa-1.0-doc_3.14.2-1_all.deb library for GNOME Online Accounts - documentation files
libgoa-backend-1.0-1_3.14.2-1_amd64.deb backend library for GNOME Online Accounts
libgoa-backend-1.0-dev_3.14.2-1_amd64.deb backend library for GNOME Online Accounts - development files
libgoffice-0.10-10-common_0.10.18-1_all.deb Document centric objects library - common files
libgoffice-0.10-10_0.10.18-1_amd64.deb Document centric objects library - runtime files
libgoffice-0.10-dev_0.10.18-1_amd64.deb Document centric objects library - development files
libgoffice-0.10-doc_0.10.18-1_all.deb Document centric objects library - documentation
libgoffice-0.8-8-common_0.8.17-3_all.deb Document centric objects library - common files
libgoffice-0.8-8_0.8.17-3_amd64.deb Document centric objects library - runtime files
libgoffice-0.8-dev_0.8.17-3_amd64.deb Document centric objects library - development files
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