libfreecontact-perl_0.08-2+b1_amd64.deb


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Description

libfreecontact-perl - fast protein contact predictor - binding for Perl

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name libfreecontact-perl
Package version 0.08
Package release 2+b1
Package architecture amd64
Package type deb
Installed size 176 B
Download size 73.54 KB
Official Mirror ftp.br.debian.org
FreeContact is a protein residue contact predictor optimized for speed.
Its input is a multiple sequence alignment. FreeContact can function as an
accelerated drop-in for the published contact predictors
EVfold-mfDCA of DS. Marks (2011) and
PSICOV of D. Jones (2011).
FreeContact is accelerated by a combination of vector instructions, multiple
threads, and faster implementation of key parts.
Depending on the alignment, 8-fold or higher speedups are possible.
A sufficiently large alignment is required for meaningful results.
As a minimum, an alignment with an effective (after-weighting) sequence count
bigger than the length of the query sequence should be used. Alignments with
tens of thousands of (effective) sequences are considered good input.
jackhmmer(1) from the hmmer package, or hhblits(1) from hhsuite
can be used to generate the alignments, for example.
This package contains the Perl binding.

Alternatives

Package Version Architecture Repository
libfreecontact-perl_0.08-2+b1_i386.deb 0.08 i386 Debian Main
libfreecontact-perl - - -

Requires

Name Value
libc6 >= 2.4
libfreecontact0 >= 1.0.16-1~
libgcc1 >= 1:4.1.1
perl >= 5.20.0-4
perlapi-5.20.0 -

Download

Type URL
Binary Package libfreecontact-perl_0.08-2+b1_amd64.deb
Source Package libfreecontact-perl

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libfreecontact-perl deb package:
    # sudo apt-get install libfreecontact-perl

Files

Path
/usr/lib/x86_64-linux-gnu/perl5/5.20/FreeContact.pm
/usr/lib/x86_64-linux-gnu/perl5/5.20/auto/FreeContact/FreeContact.so
/usr/lib/x86_64-linux-gnu/perl5/5.20/auto/FreeContact/autosplit.ix
/usr/share/doc/libfreecontact-perl/README
/usr/share/doc/libfreecontact-perl/changelog.Debian.amd64.gz
/usr/share/doc/libfreecontact-perl/changelog.Debian.gz
/usr/share/doc/libfreecontact-perl/changelog.gz
/usr/share/doc/libfreecontact-perl/copyright
/usr/share/doc/libfreecontact-perl/examples/demo_1000.aln.gz
/usr/share/man/man3/FreeContact.3pm.gz

Changelog

2013-09-28 - Laszlo Kajan <lkajan@rostlab.org>
libfreecontact-perl (0.08-2) unstable; urgency=low
* Updated build dependency to new version of libfreecontact0-dev that fixes
#724257.
2013-09-19 - Laszlo Kajan <lkajan@rostlab.org>
libfreecontact-perl (0.08-1) unstable; urgency=low
* Initial release (Closes: #723747).

See Also

Package Description
libfreecontact0-dev_1.0.21-3+b1_amd64.deb fast protein contact predictor library - development files
libfreecontact0_1.0.21-3+b1_amd64.deb fast protein contact predictor library
libfreefare-bin_0.4.0-2_amd64.deb MIFARE card manipulations binaries
libfreefare-dev_0.4.0-2_amd64.deb MIFARE card manipulations library (development files)
libfreefare-doc_0.4.0-2_all.deb documentation for libfreefare
libfreefare0_0.4.0-2_amd64.deb MIFARE card manipulations library
libfreefem++-dev_3.31-2-1_amd64.deb Provides the development files of the FreeFem++ FE suite
libfreefem++_3.31-2-1_amd64.deb Provides the shared libraries of the FreeFem++ FE suite
libfreefem-dev_3.5.8-5.1_amd64.deb Development library, header files and manpages
libfreefem-doc_3.5.8-5.1_all.deb Documentation for FreeFEM development
libfreefem0_3.5.8-5.1_amd64.deb Shared libraries for FreeFEM
libfreefoam-dev_0.1.0+dfsg+1-3_amd64.deb libraries for Computational Fluid Dynamics (CFD) - development files
libfreefoam1_0.1.0+dfsg+1-3_amd64.deb libraries for Computational Fluid Dynamics (CFD)
libfreehand-0.1-1_0.1.0-2_amd64.deb Library for parsing the FreeHand file format structure
libfreehand-dev_0.1.0-2_amd64.deb Library for parsing the FreeHand file format structure -- development
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