libbpp-seq-dev_2.1.0-1_amd64.deb


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Description

libbpp-seq-dev - Bio++ Sequence library development files

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name libbpp-seq-dev
Package version 2.1.0
Package release 1
Package architecture amd64
Package type deb
Installed size 6.48 KB
Download size 1.25 MB
Official Mirror ftp.br.debian.org
Contains the Bio++ classes for sequence analysis.

Alternatives

Package Version Architecture Repository
libbpp-seq-dev_2.1.0-1_i386.deb 2.1.0 i386 Debian Main
libbpp-seq-dev - - -

Requires

Name Value
libbpp-core-dev >= 2.1.0
libbpp-seq9 = 2.1.0-1

Download

Type URL
Binary Package libbpp-seq-dev_2.1.0-1_amd64.deb
Source Package libbpp-seq

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libbpp-seq-dev deb package:
    # sudo apt-get install libbpp-seq-dev

Files

Path
/usr/include/Bpp/Seq/CodonSiteTools.h
/usr/include/Bpp/Seq/DNAToRNA.h
/usr/include/Bpp/Seq/DistanceMatrix.h
/usr/include/Bpp/Seq/NucleicAcidsReplication.h
/usr/include/Bpp/Seq/Sequence.h
/usr/include/Bpp/Seq/SequenceExceptions.h
/usr/include/Bpp/Seq/SequenceIterator.h
/usr/include/Bpp/Seq/SequencePositionIterators.h
/usr/include/Bpp/Seq/SequenceTools.h
/usr/include/Bpp/Seq/SequenceWalker.h
/usr/include/Bpp/Seq/SequenceWithAnnotation.h
/usr/include/Bpp/Seq/SequenceWithAnnotationTools.h
/usr/include/Bpp/Seq/SequenceWithQuality.h
/usr/include/Bpp/Seq/SequenceWithQualityTools.h
/usr/include/Bpp/Seq/Site.h
/usr/include/Bpp/Seq/SiteExceptions.h
/usr/include/Bpp/Seq/SiteIterator.h
/usr/include/Bpp/Seq/SiteTools.h
/usr/include/Bpp/Seq/StringSequenceTools.h
/usr/include/Bpp/Seq/SymbolList.h
/usr/include/Bpp/Seq/SymbolListTools.h
/usr/include/Bpp/Seq/Transliterator.h
/usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h
/usr/include/Bpp/Seq/Alphabet/Alphabet.h
/usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h
/usr/include/Bpp/Seq/Alphabet/AlphabetState.h
/usr/include/Bpp/Seq/Alphabet/AlphabetTools.h
/usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h
/usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h
/usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h
/usr/include/Bpp/Seq/Alphabet/DNA.h
/usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h
/usr/include/Bpp/Seq/Alphabet/EchinodermMitochondrialCodonAlphabet.h
/usr/include/Bpp/Seq/Alphabet/InvertebrateMitochondrialCodonAlphabet.h
/usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h
/usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h
/usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h
/usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h
/usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h
/usr/include/Bpp/Seq/Alphabet/RNA.h
/usr/include/Bpp/Seq/Alphabet/RNY.h
/usr/include/Bpp/Seq/Alphabet/StandardCodonAlphabet.h
/usr/include/Bpp/Seq/Alphabet/VertebrateMitochondrialCodonAlphabet.h
/usr/include/Bpp/Seq/Alphabet/WordAlphabet.h
/usr/include/Bpp/Seq/Alphabet/YeastMitochondrialCodonAlphabet.h
/usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h
/usr/include/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h
/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h
/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h
/usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h
/usr/include/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h
/usr/include/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h
/usr/include/Bpp/Seq/AlphabetIndex/AAMassIndex.h
/usr/include/Bpp/Seq/AlphabetIndex/AASEA1030Index.h
/usr/include/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h
/usr/include/Bpp/Seq/AlphabetIndex/AASEASup30Index.h
/usr/include/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h
/usr/include/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h
/usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h
/usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h
/usr/include/Bpp/Seq/AlphabetIndex/BLOSUM50.h
/usr/include/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h
/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h
/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h
/usr/include/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h
/usr/include/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h
/usr/include/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h
/usr/include/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h
/usr/include/Bpp/Seq/AlphabetIndex/SimpleScore.h
/usr/include/Bpp/Seq/App/SequenceApplicationTools.h
/usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h
/usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h
/usr/include/Bpp/Seq/Container/CompressedVectorSiteContainer.h
/usr/include/Bpp/Seq/Container/MapSequenceContainer.h
/usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h
/usr/include/Bpp/Seq/Container/SequenceContainer.h
/usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h
/usr/include/Bpp/Seq/Container/SequenceContainerIterator.h
/usr/include/Bpp/Seq/Container/SequenceContainerTools.h
/usr/include/Bpp/Seq/Container/SiteContainer.h
/usr/include/Bpp/Seq/Container/SiteContainerExceptions.h
/usr/include/Bpp/Seq/Container/SiteContainerIterator.h
/usr/include/Bpp/Seq/Container/SiteContainerTools.h
/usr/include/Bpp/Seq/Container/VectorSequenceContainer.h
/usr/include/Bpp/Seq/Container/VectorSiteContainer.h
/usr/include/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h
/usr/include/Bpp/Seq/GeneticCode/GeneticCode.h
/usr/include/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h
/usr/include/Bpp/Seq/GeneticCode/StandardGeneticCode.h
/usr/include/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h
/usr/include/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h
/usr/include/Bpp/Seq/Io/AbstractIAlignment.h
/usr/include/Bpp/Seq/Io/AbstractISequence.h
/usr/include/Bpp/Seq/Io/AbstractOAlignment.h
/usr/include/Bpp/Seq/Io/AbstractOSequence.h
/usr/include/Bpp/Seq/Io/BppOAlignmentReaderFormat.h
/usr/include/Bpp/Seq/Io/BppOAlignmentWriterFormat.h
/usr/include/Bpp/Seq/Io/BppOAlphabetIndex1Format.h
/usr/include/Bpp/Seq/Io/BppOAlphabetIndex2Format.h
/usr/include/Bpp/Seq/Io/BppOSequenceReaderFormat.h
/usr/include/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h
/usr/include/Bpp/Seq/Io/BppOSequenceWriterFormat.h
/usr/include/Bpp/Seq/Io/Clustal.h
/usr/include/Bpp/Seq/Io/Dcse.h
/usr/include/Bpp/Seq/Io/Fasta.h
/usr/include/Bpp/Seq/Io/GenBank.h
/usr/include/Bpp/Seq/Io/ISequence.h
/usr/include/Bpp/Seq/Io/ISequenceStream.h
/usr/include/Bpp/Seq/Io/IoSequence.h
/usr/include/Bpp/Seq/Io/IoSequenceFactory.h
/usr/include/Bpp/Seq/Io/IoSequenceStream.h
/usr/include/Bpp/Seq/Io/Mase.h
/usr/include/Bpp/Seq/Io/MaseTools.h
/usr/include/Bpp/Seq/Io/NexusIoSequence.h
/usr/include/Bpp/Seq/Io/NexusTools.h
/usr/include/Bpp/Seq/Io/OSequence.h
/usr/include/Bpp/Seq/Io/OSequenceStream.h
/usr/include/Bpp/Seq/Io/PhredPhd.h
/usr/include/Bpp/Seq/Io/PhredPoly.h
/usr/include/Bpp/Seq/Io/Phylip.h
/usr/include/Bpp/Seq/Io/SequenceFileIndex.h
/usr/include/Bpp/Seq/Io/Stockholm.h
/usr/include/Bpp/Seq/Io/StreamSequenceIterator.h
/usr/lib/libbpp-seq.a
/usr/lib/libbpp-seq.so
/usr/share/doc/libbpp-seq-dev/changelog.Debian.gz
/usr/share/doc/libbpp-seq-dev/changelog.gz
/usr/share/doc/libbpp-seq-dev/copyright

Changelog

2013-03-05 - Julien Dutheil <julien.dutheil@univ-montp2.fr>
libbpp-seq (2.1.0-1) unstable; urgency=low
* 'omics' tools now in bpp-seq-omics
* Extended BppO support
* StateProperties renamed to AlphabetIndex
2012-02-09 - Julien Dutheil <julien.dutheil@univ-montp2.fr>
libbpp-seq (2.0.3-1) unstable; urgency=low
* Bugs fixed in maf parser + new iterators
* Added support for GFF
* Added support for FastQ
* Several bugs fixed
2011-06-09 - Julien Dutheil <julien.dutheil@univ-montp2.fr>
libbpp-seq (2.0.2-1) unstable; urgency=low
* RFP: Bio++ -- The Bio++ bioinformatics libraries. (Closes: #616373).
* Packages are now non-native.
* Bugs fixed in maf parser.
2011-02-28 - Julien Dutheil <julien.dutheil@univ-montp2.fr>
libbpp-seq (2.0.1) unstable; urgency=low
* Fixed copyright and rules file.
2011-02-07 - Julien Dutheil <julien.dutheil@univ-montp2.fr>
libbpp-seq (2.0.0) unstable; urgency=low
* New source files organization.
* More NGS tools: sequence annotations, quality scores, file parsers, etc.
2010-03-25 - Julien Dutheil <julien.dutheil@univ-montp2.fr>
libbpp-seq (1.7.0) unstable; urgency=low
* Several bug fixed. Compilation with -Weffc++.
* New compressed sites container.
* Improved security by changing several pointers to references.
2009-06-10 - Julien Dutheil <jdutheil@birc.au.dk>
libbpp-seq (1.6.0) unstable; urgency=low
* New support for Nexus sequence files.
* Update for version 1.8 of Bio++.
2008-12-11 - Julien Dutheil <jdutheil@birc.au.dk>
libbpp-seq (1.5.0) unstable; urgency=low
* Several bugs fixed, new Phred sequence format, speed improvements.
2008-07-21 - Julien Dutheil <jdutheil@birc.au.dk>
libbpp-seq (1.4.1) unstable; urgency=low
* Initial Release.

See Also

Package Description
libbpp-seq-omics-dev_2.1.0-1_amd64.deb Bio++ Sequence library: genomics components
libbpp-seq-omics1_2.1.0-1_amd64.deb Bio++ Sequence library: genomics components
libbpp-seq9_2.1.0-1_amd64.deb Bio++ Sequence library
libbrahe-1.3-3_1.3.2-4_amd64.deb heterogeneous C library of numeric functions
libbrahe-dev_1.3.2-4_amd64.deb heterogeneous C library of numeric functions
libbrailleutils-java-doc_1.2.3-1_all.deb javadoc for brailleUtils for converting/embossing PEF files
libbrailleutils-java_1.2.3-1_all.deb cross platform library for embossing/converting PEF-files
libbrasero-media3-1_3.11.4-1.1_amd64.deb CD/DVD burning library for GNOME - runtime
libbrasero-media3-dev_3.11.4-1.1_amd64.deb CD/DVD burning library for GNOME - development
libbread-board-perl_0.32-1_all.deb solderless way to wire up your application components
libbridge-method-injector-java-doc_1.13-1_all.deb Documentation for Bridge Method Injector
libbridge-method-injector-java_1.13-1_all.deb Evolve Java classes without breaking compatibility
libbrlapi-dev_5.2~20141018-5_amd64.deb Library for communication with BRLTTY - static libs and headers
libbrlapi-java_5.2~20141018-5_all.deb Java bindings for BrlAPI
libbrlapi-jni_5.2~20141018-5_amd64.deb Java bindings for BrlAPI (native library)
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