libbpp-seq-dev_2.1.0-1_amd64.deb


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Description

libbpp-seq-dev - Bio++ Sequence library development files

Distribution: Debian 8 (Jessie)
Repository: Debian Main amd64
Package name: libbpp-seq-dev
Package version: 2.1.0
Package release: 1
Package architecture: amd64
Package type: deb
Installed size: 6.48 KB
Download size: 1.25 MB
Official Mirror: ftp.br.debian.org
Contains the Bio++ classes for sequence analysis.

Alternatives

    Download

    Source package: libbpp-seq

    Install Howto

    1. Update the package index:
      # sudo apt-get update
    2. Install libbpp-seq-dev deb package:
      # sudo apt-get install libbpp-seq-dev

    Files

    • /usr/include/Bpp/Seq/CodonSiteTools.h
    • /usr/include/Bpp/Seq/DNAToRNA.h
    • /usr/include/Bpp/Seq/DistanceMatrix.h
    • /usr/include/Bpp/Seq/NucleicAcidsReplication.h
    • /usr/include/Bpp/Seq/Sequence.h
    • /usr/include/Bpp/Seq/SequenceExceptions.h
    • /usr/include/Bpp/Seq/SequenceIterator.h
    • /usr/include/Bpp/Seq/SequencePositionIterators.h
    • /usr/include/Bpp/Seq/SequenceTools.h
    • /usr/include/Bpp/Seq/SequenceWalker.h
    • /usr/include/Bpp/Seq/SequenceWithAnnotation.h
    • /usr/include/Bpp/Seq/SequenceWithAnnotationTools.h
    • /usr/include/Bpp/Seq/SequenceWithQuality.h
    • /usr/include/Bpp/Seq/SequenceWithQualityTools.h
    • /usr/include/Bpp/Seq/Site.h
    • /usr/include/Bpp/Seq/SiteExceptions.h
    • /usr/include/Bpp/Seq/SiteIterator.h
    • /usr/include/Bpp/Seq/SiteTools.h
    • /usr/include/Bpp/Seq/StringSequenceTools.h
    • /usr/include/Bpp/Seq/SymbolList.h
    • /usr/include/Bpp/Seq/SymbolListTools.h
    • /usr/include/Bpp/Seq/Transliterator.h
    • /usr/include/Bpp/Seq/Alphabet/AbstractAlphabet.h
    • /usr/include/Bpp/Seq/Alphabet/Alphabet.h
    • /usr/include/Bpp/Seq/Alphabet/AlphabetExceptions.h
    • /usr/include/Bpp/Seq/Alphabet/AlphabetState.h
    • /usr/include/Bpp/Seq/Alphabet/AlphabetTools.h
    • /usr/include/Bpp/Seq/Alphabet/BinaryAlphabet.h
    • /usr/include/Bpp/Seq/Alphabet/CaseMaskedAlphabet.h
    • /usr/include/Bpp/Seq/Alphabet/CodonAlphabet.h
    • /usr/include/Bpp/Seq/Alphabet/DNA.h
    • /usr/include/Bpp/Seq/Alphabet/DefaultAlphabet.h
    • /usr/include/Bpp/Seq/Alphabet/EchinodermMitochondrialCodonAlphabet.h
    • /usr/include/Bpp/Seq/Alphabet/InvertebrateMitochondrialCodonAlphabet.h
    • /usr/include/Bpp/Seq/Alphabet/LetterAlphabet.h
    • /usr/include/Bpp/Seq/Alphabet/NucleicAlphabet.h
    • /usr/include/Bpp/Seq/Alphabet/NucleicAlphabetState.h
    • /usr/include/Bpp/Seq/Alphabet/ProteicAlphabet.h
    • /usr/include/Bpp/Seq/Alphabet/ProteicAlphabetState.h
    • /usr/include/Bpp/Seq/Alphabet/RNA.h
    • /usr/include/Bpp/Seq/Alphabet/RNY.h
    • /usr/include/Bpp/Seq/Alphabet/StandardCodonAlphabet.h
    • /usr/include/Bpp/Seq/Alphabet/VertebrateMitochondrialCodonAlphabet.h
    • /usr/include/Bpp/Seq/Alphabet/WordAlphabet.h
    • /usr/include/Bpp/Seq/Alphabet/YeastMitochondrialCodonAlphabet.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AAChargeIndex.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AAChenGuHuangHydrophobicityIndex.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanAHelixIndex.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanBSheetIndex.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AAChouFasmanTurnIndex.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AAIndex1Entry.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AAIndex2Entry.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AAMassIndex.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AASEA1030Index.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AASEAInf10Index.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AASEASup30Index.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AASurfaceIndex.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AAVolumeIndex.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex1.h
    • /usr/include/Bpp/Seq/AlphabetIndex/AlphabetIndex2.h
    • /usr/include/Bpp/Seq/AlphabetIndex/BLOSUM50.h
    • /usr/include/Bpp/Seq/AlphabetIndex/DefaultNucleotideScore.h
    • /usr/include/Bpp/Seq/AlphabetIndex/GranthamAAChemicalDistance.h
    • /usr/include/Bpp/Seq/AlphabetIndex/GranthamAAPolarityIndex.h
    • /usr/include/Bpp/Seq/AlphabetIndex/GranthamAAVolumeIndex.h
    • /usr/include/Bpp/Seq/AlphabetIndex/KleinAANetChargeIndex.h
    • /usr/include/Bpp/Seq/AlphabetIndex/MiyataAAChemicalDistance.h
    • /usr/include/Bpp/Seq/AlphabetIndex/SimpleIndexDistance.h
    • /usr/include/Bpp/Seq/AlphabetIndex/SimpleScore.h
    • /usr/include/Bpp/Seq/App/SequenceApplicationTools.h
    • /usr/include/Bpp/Seq/Container/AbstractSequenceContainer.h
    • /usr/include/Bpp/Seq/Container/AlignedSequenceContainer.h
    • /usr/include/Bpp/Seq/Container/CompressedVectorSiteContainer.h
    • /usr/include/Bpp/Seq/Container/MapSequenceContainer.h
    • /usr/include/Bpp/Seq/Container/OrderedSequenceContainer.h
    • /usr/include/Bpp/Seq/Container/SequenceContainer.h
    • /usr/include/Bpp/Seq/Container/SequenceContainerExceptions.h
    • /usr/include/Bpp/Seq/Container/SequenceContainerIterator.h
    • /usr/include/Bpp/Seq/Container/SequenceContainerTools.h
    • /usr/include/Bpp/Seq/Container/SiteContainer.h
    • /usr/include/Bpp/Seq/Container/SiteContainerExceptions.h
    • /usr/include/Bpp/Seq/Container/SiteContainerIterator.h
    • /usr/include/Bpp/Seq/Container/SiteContainerTools.h
    • /usr/include/Bpp/Seq/Container/VectorSequenceContainer.h
    • /usr/include/Bpp/Seq/Container/VectorSiteContainer.h
    • /usr/include/Bpp/Seq/GeneticCode/EchinodermMitochondrialGeneticCode.h
    • /usr/include/Bpp/Seq/GeneticCode/GeneticCode.h
    • /usr/include/Bpp/Seq/GeneticCode/InvertebrateMitochondrialGeneticCode.h
    • /usr/include/Bpp/Seq/GeneticCode/StandardGeneticCode.h
    • /usr/include/Bpp/Seq/GeneticCode/VertebrateMitochondrialGeneticCode.h
    • /usr/include/Bpp/Seq/GeneticCode/YeastMitochondrialGeneticCode.h
    • /usr/include/Bpp/Seq/Io/AbstractIAlignment.h
    • /usr/include/Bpp/Seq/Io/AbstractISequence.h
    • /usr/include/Bpp/Seq/Io/AbstractOAlignment.h
    • /usr/include/Bpp/Seq/Io/AbstractOSequence.h
    • /usr/include/Bpp/Seq/Io/BppOAlignmentReaderFormat.h
    • /usr/include/Bpp/Seq/Io/BppOAlignmentWriterFormat.h
    • /usr/include/Bpp/Seq/Io/BppOAlphabetIndex1Format.h
    • /usr/include/Bpp/Seq/Io/BppOAlphabetIndex2Format.h
    • /usr/include/Bpp/Seq/Io/BppOSequenceReaderFormat.h
    • /usr/include/Bpp/Seq/Io/BppOSequenceStreamReaderFormat.h
    • /usr/include/Bpp/Seq/Io/BppOSequenceWriterFormat.h
    • /usr/include/Bpp/Seq/Io/Clustal.h
    • /usr/include/Bpp/Seq/Io/Dcse.h
    • /usr/include/Bpp/Seq/Io/Fasta.h
    • /usr/include/Bpp/Seq/Io/GenBank.h
    • /usr/include/Bpp/Seq/Io/ISequence.h
    • /usr/include/Bpp/Seq/Io/ISequenceStream.h
    • /usr/include/Bpp/Seq/Io/IoSequence.h
    • /usr/include/Bpp/Seq/Io/IoSequenceFactory.h
    • /usr/include/Bpp/Seq/Io/IoSequenceStream.h
    • /usr/include/Bpp/Seq/Io/Mase.h
    • /usr/include/Bpp/Seq/Io/MaseTools.h
    • /usr/include/Bpp/Seq/Io/NexusIoSequence.h
    • /usr/include/Bpp/Seq/Io/NexusTools.h
    • /usr/include/Bpp/Seq/Io/OSequence.h
    • /usr/include/Bpp/Seq/Io/OSequenceStream.h
    • /usr/include/Bpp/Seq/Io/PhredPhd.h
    • /usr/include/Bpp/Seq/Io/PhredPoly.h
    • /usr/include/Bpp/Seq/Io/Phylip.h
    • /usr/include/Bpp/Seq/Io/SequenceFileIndex.h
    • /usr/include/Bpp/Seq/Io/Stockholm.h
    • /usr/include/Bpp/Seq/Io/StreamSequenceIterator.h
    • /usr/lib/libbpp-seq.a
    • /usr/lib/libbpp-seq.so
    • /usr/share/doc/libbpp-seq-dev/changelog.Debian.gz
    • /usr/share/doc/libbpp-seq-dev/changelog.gz
    • /usr/share/doc/libbpp-seq-dev/copyright

    Changelog

    2013-03-05 - Julien Dutheil <julien.dutheil@univ-montp2.fr> libbpp-seq (2.1.0-1) unstable; urgency=low * 'omics' tools now in bpp-seq-omics * Extended BppO support * StateProperties renamed to AlphabetIndex

    2012-02-09 - Julien Dutheil <julien.dutheil@univ-montp2.fr> libbpp-seq (2.0.3-1) unstable; urgency=low * Bugs fixed in maf parser + new iterators * Added support for GFF * Added support for FastQ * Several bugs fixed

    2011-06-09 - Julien Dutheil <julien.dutheil@univ-montp2.fr> libbpp-seq (2.0.2-1) unstable; urgency=low * RFP: Bio++ -- The Bio++ bioinformatics libraries. (Closes: #616373). * Packages are now non-native. * Bugs fixed in maf parser.

    2011-02-28 - Julien Dutheil <julien.dutheil@univ-montp2.fr> libbpp-seq (2.0.1) unstable; urgency=low * Fixed copyright and rules file.

    2011-02-07 - Julien Dutheil <julien.dutheil@univ-montp2.fr> libbpp-seq (2.0.0) unstable; urgency=low * New source files organization. * More NGS tools: sequence annotations, quality scores, file parsers, etc.

    2010-03-25 - Julien Dutheil <julien.dutheil@univ-montp2.fr> libbpp-seq (1.7.0) unstable; urgency=low * Several bug fixed. Compilation with -Weffc++. * New compressed sites container. * Improved security by changing several pointers to references.

    2009-06-10 - Julien Dutheil <jdutheil@birc.au.dk> libbpp-seq (1.6.0) unstable; urgency=low * New support for Nexus sequence files. * Update for version 1.8 of Bio++.

    2008-12-11 - Julien Dutheil <jdutheil@birc.au.dk> libbpp-seq (1.5.0) unstable; urgency=low * Several bugs fixed, new Phred sequence format, speed improvements.

    2008-07-21 - Julien Dutheil <jdutheil@birc.au.dk> libbpp-seq (1.4.1) unstable; urgency=low * Initial Release.

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