libbiojava3.0-java_3.1.0+dfsg-2_all.deb


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Description

libbiojava3.0-java - Java API to biological data and applications (version 3)

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name libbiojava3.0-java
Package version 3.1.0+dfsg
Package release 2
Package architecture all
Package type deb
Installed size 4.44 KB
Download size 4.18 MB
Official Mirror ftp.br.debian.org
This package presents the Open Source Java API to biological databases
and a series of mostly sequence-based algorithms.
BioJava is an open-source project dedicated to providing a Java framework
for processing biological data. It includes objects for manipulating
sequences, file parsers, server support, access to BioSQL
and Ensembl databases, and powerful analysis and statistical routines
including a dynamic programming toolkit.

Alternatives

Package Version Architecture Repository
libbiojava3.0-java_3.1.0+dfsg-2_all.deb 3.1.0+dfsg all Debian Main
libbiojava3.0-java - - -

Requires

Name Value
icedtea-netx -
libbytecode-java -
libcommons-codec-java -
libcommons-collections3-java -
libcommons-dbcp-java >= 1.1
libcommons-logging-java -
libcommons-pool-java >= 1.1
libguava-java >= 17.0
libhsqldb-java -
libitext5-java >= 5.4.1
libjmol-java -
libjson-simple-java -
liblog4j1.2-java -

Download

Type URL
Binary Package libbiojava3.0-java_3.1.0+dfsg-2_all.deb
Source Package biojava3-live

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libbiojava3.0-java deb package:
    # sudo apt-get install libbiojava3.0-java

Files

Path
/usr/share/doc/libbiojava3.0-java/README.Debian
/usr/share/doc/libbiojava3.0-java/changelog.Debian.gz
/usr/share/doc/libbiojava3.0-java/copyright
/usr/share/java/biojava3-aa-prop-3.1.0.jar
/usr/share/java/biojava3-aa-prop.jar
/usr/share/java/biojava3-alignment-3.1.0.jar
/usr/share/java/biojava3-alignment.jar
/usr/share/java/biojava3-core-3.1.0.jar
/usr/share/java/biojava3-core.jar
/usr/share/java/biojava3-forester-3.1.0.jar
/usr/share/java/biojava3-forester.jar
/usr/share/java/biojava3-genome-3.1.0.jar
/usr/share/java/biojava3-genome.jar
/usr/share/java/biojava3-modfinder-3.1.0.jar
/usr/share/java/biojava3-modfinder.jar
/usr/share/java/biojava3-phylo-3.1.0.jar
/usr/share/java/biojava3-phylo.jar
/usr/share/java/biojava3-protein-disorder-3.1.0.jar
/usr/share/java/biojava3-protein-disorder.jar
/usr/share/java/biojava3-sequencing-3.1.0.jar
/usr/share/java/biojava3-sequencing.jar
/usr/share/java/biojava3-structure-3.1.0.jar
/usr/share/java/biojava3-structure-gui-3.1.0.jar
/usr/share/java/biojava3-structure-gui.jar
/usr/share/java/biojava3-structure.jar
/usr/share/java/biojava3-ws-3.1.0.jar
/usr/share/java/biojava3-ws.jar

Changelog

2014-11-18 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.1.0+dfsg-2) unstable; urgency=medium
* Fix "FTBFS in jessie: dh_install: libbiojava3-java-doc missing files
(doc/biojava/*), aborting":
debian/build.xml: tell javadoc that source files are encoded as UTF-8;
otherwise it bails out, and dh_install finds nothing to install.
(Closes: #768710), thanks to gregor herrmann <gregoa@debian.org> 
2014-09-03 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.1.0+dfsg-1) unstable; urgency=medium
* New upstream release 
2014-08-10 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.8+dfsg-1) unstable; urgency=medium
* New upstream release
* Patch to fix Java 8 compatiblity (Closes: #745085).
Thanks to Emmanuel Bourg <ebourg@apache.org>.
* Remove patch to use log4j, not needed anymore.
2014-05-12 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.7+dfsg-3) unstable; urgency=medium
* d/control, d/build.xml: replace dependency to libcommons-collections3-java
(Closes: #744208).
2014-05-12 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.7+dfsg-2) unstable; urgency=medium
* d/build.xml, d/control: change deps jar file name(Closes: #747781).
2013-06-18 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.7+dfsg-1) unstable; urgency=low
* New upstream release
* Use Standards 3.9.5
[debian/watch]: use new upstream GitHub repository
2013-06-18 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.5-3) unstable; urgency=low
* Fix issue wit itext5 >= 5.4.1 related to API change (Closes: #712359)
* debian/build.xml: fork junit tests
2013-01-03 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.5-2) unstable; urgency=low
* Remove tests needing network access (Closes: #696947)
2012-12-02 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.5-1) unstable; urgency=low
* New upstream release
* Use forester 1.005
2012-08-01 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.4-2) unstable; urgency=low
[ Olivier Sallou ]
Patch from James Page <james.page@ubuntu.com> (Closes: #683513).
* Transition to use default java implementation:
- d/control: Use default-jdk (>= 1:1.6) instead of openjdk-6-jdk
for package build.

See Also

Package Description
libbiosig-dev_1.3.0-2+b2_amd64.deb I/O library for biomedical data - development files
libbiosig1_1.3.0-2+b2_amd64.deb I/O library for biomedical data - dynamic library
libbisho-common-dev_0.27.2+git20111122.9e68ef3d-2_amd64.deb Meego web services settings library (development files)
libbisho-common0_0.27.2+git20111122.9e68ef3d-2_amd64.deb Meego web services settings library
libbison-dev_3.0.2.dfsg-2_amd64.deb YACC-compatible parser generator - development library
libbit-vector-minimal-perl_1.3-4_all.deb object-oriented wrapper around vec()
libbit-vector-perl_7.3-1+b2_amd64.deb Perl module for bit vectors and more
libbitcoin-dev_2.0-2.2_amd64.deb Bitcoin toolkit library for asynchronous apps - development headers
libbitcoin0_2.0-2.2_amd64.deb Bitcoin toolkit library for asynchronous apps
libbitmask-dev_2.0-2_amd64.deb header files and docs for libbitmask
libbitmask1_2.0-2_amd64.deb supports multi-word bitmask operations
libbitstream-dev_1.0-1_all.deb access to binary structures such as specified by MPEG, DVB, IETF and more
libbitstring-ocaml-dev_2.0.4-2_amd64.deb Erlang-style bitstrings for OCaml (development files)
libbitstring-ocaml_2.0.4-2_amd64.deb Erlang-style bitstrings for OCaml (runtime)
libbjack-ocaml-dev_0.1.4-2+b1_amd64.deb OCaml blocking interface to jack audio connection kit
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