libbiojava3-java_3.1.0+dfsg-2_all.deb


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Description

libbiojava3-java - Java API to biological data and applications (default version)

Property Value
Distribution Debian 8 (Jessie)
Repository Debian Main amd64
Package name libbiojava3-java
Package version 3.1.0+dfsg
Package release 2
Package architecture all
Package type deb
Installed size 29 B
Download size 3.57 KB
Official Mirror ftp.br.debian.org
BioJava is an open-source project dedicated to providing a Java framework
for processing biological data. It includes objects for manipulating
sequences, file parsers, server support, access to BioSQL
and Ensembl databases, and powerful analysis and statistical routines
including a dynamic programming toolkit.
BioJava is provided by a vibrant community which meets annually at
the Bioinformatics Open Source Conference (BOSC) that traditionally
accompanies the Intelligent Systems in Molecular Biology (ISMB)
meeting. Much like BioPerl, the employment of this library is valuable
for everybody active in the field because of the many tricks of the
trade one learns just by communicating on the mailing list.
This is a wrapper package which should enable smooth upgrades to new
versions.

Alternatives

Package Version Architecture Repository
libbiojava3-java_3.1.0+dfsg-2_all.deb 3.1.0+dfsg all Debian Main
libbiojava3-java - - -

Requires

Name Value
libbiojava3.0-java -

Provides

Name Value
libbiojava3-java -

Download

Type URL
Binary Package libbiojava3-java_3.1.0+dfsg-2_all.deb
Source Package biojava3-live

Install Howto

  1. Update the package index:
    # sudo apt-get update
  2. Install libbiojava3-java deb package:
    # sudo apt-get install libbiojava3-java

Files

Path
/usr/share/doc/libbiojava3-java/changelog.Debian.gz
/usr/share/doc/libbiojava3-java/copyright

Changelog

2014-11-18 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.1.0+dfsg-2) unstable; urgency=medium
* Fix "FTBFS in jessie: dh_install: libbiojava3-java-doc missing files
(doc/biojava/*), aborting":
debian/build.xml: tell javadoc that source files are encoded as UTF-8;
otherwise it bails out, and dh_install finds nothing to install.
(Closes: #768710), thanks to gregor herrmann <gregoa@debian.org> 
2014-09-03 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.1.0+dfsg-1) unstable; urgency=medium
* New upstream release 
2014-08-10 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.8+dfsg-1) unstable; urgency=medium
* New upstream release
* Patch to fix Java 8 compatiblity (Closes: #745085).
Thanks to Emmanuel Bourg <ebourg@apache.org>.
* Remove patch to use log4j, not needed anymore.
2014-05-12 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.7+dfsg-3) unstable; urgency=medium
* d/control, d/build.xml: replace dependency to libcommons-collections3-java
(Closes: #744208).
2014-05-12 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.7+dfsg-2) unstable; urgency=medium
* d/build.xml, d/control: change deps jar file name(Closes: #747781).
2013-06-18 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.7+dfsg-1) unstable; urgency=low
* New upstream release
* Use Standards 3.9.5
[debian/watch]: use new upstream GitHub repository
2013-06-18 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.5-3) unstable; urgency=low
* Fix issue wit itext5 >= 5.4.1 related to API change (Closes: #712359)
* debian/build.xml: fork junit tests
2013-01-03 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.5-2) unstable; urgency=low
* Remove tests needing network access (Closes: #696947)
2012-12-02 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.5-1) unstable; urgency=low
* New upstream release
* Use forester 1.005
2012-08-01 - Olivier Sallou <osallou@debian.org>
biojava3-live (3.0.4-2) unstable; urgency=low
[ Olivier Sallou ]
Patch from James Page <james.page@ubuntu.com> (Closes: #683513).
* Transition to use default java implementation:
- d/control: Use default-jdk (>= 1:1.6) instead of openjdk-6-jdk
for package build.

See Also

Package Description
libbiojava3.0-java_3.1.0+dfsg-2_all.deb Java API to biological data and applications (version 3)
libbiosig-dev_1.3.0-2+b2_amd64.deb I/O library for biomedical data - development files
libbiosig1_1.3.0-2+b2_amd64.deb I/O library for biomedical data - dynamic library
libbisho-common-dev_0.27.2+git20111122.9e68ef3d-2_amd64.deb Meego web services settings library (development files)
libbisho-common0_0.27.2+git20111122.9e68ef3d-2_amd64.deb Meego web services settings library
libbison-dev_3.0.2.dfsg-2_amd64.deb YACC-compatible parser generator - development library
libbit-vector-minimal-perl_1.3-4_all.deb object-oriented wrapper around vec()
libbit-vector-perl_7.3-1+b2_amd64.deb Perl module for bit vectors and more
libbitcoin-dev_2.0-2.2_amd64.deb Bitcoin toolkit library for asynchronous apps - development headers
libbitcoin0_2.0-2.2_amd64.deb Bitcoin toolkit library for asynchronous apps
libbitmask-dev_2.0-2_amd64.deb header files and docs for libbitmask
libbitmask1_2.0-2_amd64.deb supports multi-word bitmask operations
libbitstream-dev_1.0-1_all.deb access to binary structures such as specified by MPEG, DVB, IETF and more
libbitstring-ocaml-dev_2.0.4-2_amd64.deb Erlang-style bitstrings for OCaml (development files)
libbitstring-ocaml_2.0.4-2_amd64.deb Erlang-style bitstrings for OCaml (runtime)
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